Wall clock time and date at job start Tue Mar 31 2020 05:42:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52996 * 109.47346 * 2 1 4 4 C 1.53001 * 109.46637 * 239.99940 * 2 1 3 5 5 C 1.50697 * 109.47291 * 60.00213 * 4 2 1 6 6 H 1.08006 * 119.99920 * 359.97438 * 5 4 2 7 7 C 1.37876 * 120.00428 * 179.97438 * 5 4 2 8 8 N 1.31520 * 120.00162 * 179.97438 * 7 5 4 9 9 Si 1.86798 * 119.99868 * 359.97438 * 7 5 4 10 10 H 1.48504 * 109.47023 * 90.00014 * 9 7 5 11 11 H 1.48496 * 109.47251 * 210.00457 * 9 7 5 12 12 H 1.48498 * 109.47139 * 330.00202 * 9 7 5 13 13 C 1.53000 * 109.47233 * 120.00458 * 2 1 3 14 14 N 1.46499 * 109.46840 * 299.99500 * 13 2 1 15 15 C 1.38408 * 119.99924 * 179.97438 * 14 13 2 16 16 N 1.32489 * 119.21620 * 359.73928 * 15 14 13 17 17 C 1.32281 * 120.74113 * 179.71630 * 16 15 14 18 18 C 1.38609 * 119.19298 * 0.53834 * 17 16 15 19 19 C 1.50703 * 120.71991 * 179.70859 * 18 17 16 20 20 F 1.39894 * 109.46886 * 120.02207 * 19 18 17 21 21 F 1.39900 * 109.47012 * 240.02476 * 19 18 17 22 22 C 1.38607 * 118.55889 * 359.73634 * 18 17 16 23 23 N 1.32273 * 119.19831 * 359.97438 * 22 18 17 24 24 H 1.09000 * 109.46986 * 299.99746 * 1 2 3 25 25 H 1.08993 * 109.47662 * 59.99968 * 1 2 3 26 26 H 1.09002 * 109.47075 * 180.02562 * 1 2 3 27 27 H 1.08992 * 109.47554 * 180.02562 * 3 2 1 28 28 H 1.09004 * 109.47108 * 300.00289 * 3 2 1 29 29 H 1.09000 * 109.46870 * 60.00183 * 3 2 1 30 30 H 1.09001 * 109.47109 * 179.97438 * 4 2 1 31 31 H 1.09002 * 109.47508 * 299.99876 * 4 2 1 32 32 H 0.96996 * 119.99309 * 179.97438 * 8 7 5 33 33 H 1.09002 * 109.47398 * 59.99826 * 13 2 1 34 34 H 1.09001 * 109.47194 * 180.02562 * 13 2 1 35 35 H 0.97000 * 120.00420 * 0.02562 * 14 13 2 36 36 H 1.07996 * 120.40618 * 180.24664 * 17 16 15 37 37 H 1.09000 * 109.46782 * 0.02628 * 19 18 17 38 38 H 1.08000 * 120.39788 * 179.97438 * 22 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0399 -0.7213 -1.2493 5 6 1.5376 -0.0109 -2.4797 6 1 0.9164 0.8671 -2.3806 7 6 1.8710 -0.4816 -3.7320 8 7 1.4321 0.1381 -4.8058 9 14 2.9460 -1.9996 -3.9035 10 1 2.0882 -3.2110 -3.9490 11 1 3.7379 -1.9064 -5.1562 12 1 3.8664 -2.0882 -2.7415 13 6 2.0401 -0.7213 1.2492 14 7 1.5518 -0.0307 2.4454 15 6 1.8857 -0.5040 3.7024 16 7 2.6436 -1.5858 3.8059 17 6 2.9855 -2.0609 4.9921 18 6 2.5318 -1.4191 6.1338 19 6 2.8951 -1.9347 7.5026 20 9 3.5946 -0.9459 8.2027 21 9 1.7288 -2.2643 8.2014 22 6 1.7363 -0.2933 5.9894 23 7 1.4360 0.1329 4.7737 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 3.1300 1.4425 -0.0005 28 1 1.6767 1.9563 -0.8900 29 1 1.6768 1.9562 0.8900 30 1 3.1299 -0.7209 -1.2496 31 1 1.6766 -1.7490 -1.2493 32 1 1.6670 -0.1929 -5.6868 33 1 1.6767 -1.7490 1.2492 34 1 3.1301 -0.7209 1.2494 35 1 0.9939 0.7578 2.3565 36 1 3.6068 -2.9408 5.0701 37 1 3.5215 -2.8210 7.4025 38 1 1.3662 0.2295 6.8588 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000450529861.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:42:50 Heat of formation + Delta-G solvation = -60.250747 kcal Electronic energy + Delta-G solvation = -21965.624907 eV Core-core repulsion = 18285.687029 eV Total energy + Delta-G solvation = -3679.937878 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 285.135 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -49.23509 -47.22588 -41.12856 -38.02705 -34.95443 -33.89244 -32.52594 -31.53022 -27.95063 -26.90258 -26.60829 -25.43770 -24.80866 -22.84984 -21.89649 -19.01143 -18.08254 -17.81443 -17.47905 -17.43453 -16.92866 -16.59948 -15.43726 -15.07419 -14.67170 -14.21952 -14.03066 -13.99240 -13.69880 -13.60508 -13.48045 -13.40392 -12.79283 -12.68645 -12.34033 -12.29817 -11.42071 -11.20860 -11.06771 -11.05025 -10.90590 -10.71583 -10.57635 -10.50196 -9.98023 -9.79596 -9.61408 -9.31259 -9.04536 -8.57326 -8.21348 -6.07640 -4.05359 0.78805 0.97507 2.80675 3.28032 3.36346 3.39038 3.47123 3.62731 3.90619 3.96951 4.25001 4.35947 4.41859 4.60760 4.77503 5.06977 5.24287 5.26483 5.44518 5.46299 5.59316 5.83490 6.04282 6.05998 6.10889 6.26011 6.48208 6.54505 6.63582 6.82049 6.95585 6.96757 7.00705 7.13382 7.30262 7.36572 7.74217 8.16692 8.49072 8.96369 9.54561 11.05121 Molecular weight = 285.13amu Principal moments of inertia in cm(-1) A = 0.036044 B = 0.003064 C = 0.002931 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 776.636492 B = 9136.721054 C = 9552.335172 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.064 4.064 3 C -0.130 4.130 4 C 0.000 4.000 5 C -0.512 4.512 6 H 0.078 0.922 7 C 0.067 3.933 8 N -0.903 5.903 9 Si 0.875 3.125 10 H -0.278 1.278 11 H -0.289 1.289 12 H -0.265 1.265 13 C 0.138 3.862 14 N -0.675 5.675 15 C 0.580 3.420 16 N -0.565 5.565 17 C 0.234 3.766 18 C -0.366 4.366 19 C 0.335 3.665 20 F -0.202 7.202 21 F -0.202 7.202 22 C 0.239 3.761 23 N -0.574 5.574 24 H 0.031 0.969 25 H 0.074 0.926 26 H 0.047 0.953 27 H 0.047 0.953 28 H 0.074 0.926 29 H 0.031 0.969 30 H 0.019 0.981 31 H 0.014 0.986 32 H 0.263 0.737 33 H 0.067 0.933 34 H 0.067 0.933 35 H 0.416 0.584 36 H 0.171 0.829 37 H 0.118 0.882 38 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.977 -4.151 23.003 23.563 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.064 4.064 3 C -0.187 4.187 4 C -0.038 4.038 5 C -0.550 4.550 6 H 0.096 0.904 7 C -0.134 4.134 8 N -0.542 5.542 9 Si 0.703 3.297 10 H -0.204 1.204 11 H -0.215 1.215 12 H -0.190 1.190 13 C 0.015 3.985 14 N -0.308 5.308 15 C 0.223 3.777 16 N -0.288 5.288 17 C 0.064 3.936 18 C -0.376 4.376 19 C 0.280 3.720 20 F -0.183 7.183 21 F -0.183 7.183 22 C 0.069 3.931 23 N -0.296 5.296 24 H 0.050 0.950 25 H 0.093 0.907 26 H 0.066 0.934 27 H 0.066 0.934 28 H 0.093 0.907 29 H 0.050 0.950 30 H 0.037 0.963 31 H 0.032 0.968 32 H 0.072 0.928 33 H 0.086 0.914 34 H 0.085 0.915 35 H 0.256 0.744 36 H 0.188 0.812 37 H 0.135 0.865 38 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges 2.759 -3.846 21.606 22.118 hybrid contribution 0.534 -0.790 0.661 1.160 sum 3.292 -4.636 22.267 22.981 Atomic orbital electron populations 1.21789 0.94679 1.01315 1.00950 1.20733 0.95955 0.96023 0.93727 1.21784 1.00457 0.95525 1.00949 1.19576 0.96282 0.95462 0.92448 1.21070 1.31926 1.13431 0.88595 0.90380 1.25003 0.95699 0.96766 0.95964 1.69903 1.45831 1.40569 0.97909 0.86848 0.81299 0.83881 0.77671 1.20361 1.21484 1.19000 1.21756 0.98970 0.95892 0.81926 1.44739 1.53312 1.31760 1.00983 1.19606 0.85674 0.85446 0.86965 1.68113 1.18786 1.14541 1.27313 1.22748 0.90018 0.95189 0.85641 1.21614 1.13666 1.05662 0.96648 1.19902 0.80158 0.89226 0.82680 1.93013 1.79071 1.65305 1.80946 1.93015 1.51397 1.92916 1.81004 1.22687 0.86777 0.89286 0.94351 1.68055 1.28780 1.34413 0.98396 0.94967 0.90714 0.93362 0.93353 0.90718 0.94955 0.96311 0.96759 0.92752 0.91445 0.91453 0.74417 0.81214 0.86456 0.81531 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.24 8.05 37.16 0.30 -1.94 16 2 C -0.06 -1.14 0.54 -154.51 -0.08 -1.22 16 3 C -0.13 -2.24 8.05 37.16 0.30 -1.94 16 4 C 0.00 0.00 3.11 -27.88 -0.09 -0.08 16 5 C -0.51 -13.49 8.20 -34.44 -0.28 -13.77 16 6 H 0.08 2.19 5.92 -52.48 -0.31 1.88 16 7 C 0.07 1.86 5.47 -17.82 -0.10 1.77 16 8 N -0.90 -26.95 13.96 55.43 0.77 -26.18 16 9 Si 0.88 21.05 27.47 -169.99 -4.67 16.38 16 10 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 11 H -0.29 -6.97 7.11 56.52 0.40 -6.56 16 12 H -0.27 -6.12 6.54 56.52 0.37 -5.75 16 13 C 0.14 2.17 4.54 -4.04 -0.02 2.15 16 14 N -0.67 -9.70 5.11 -62.31 -0.32 -10.02 16 15 C 0.58 8.32 8.43 -322.81 -2.72 5.60 16 16 N -0.56 -7.63 9.59 -13.93 -0.13 -7.76 16 17 C 0.23 2.30 10.95 -17.22 -0.19 2.11 16 18 C -0.37 -3.44 5.39 -104.35 -0.56 -4.00 16 19 C 0.34 2.43 5.49 36.01 0.20 2.63 16 20 F -0.20 -1.82 17.27 2.25 0.04 -1.78 16 21 F -0.20 -1.82 17.27 2.25 0.04 -1.78 16 22 C 0.24 2.61 10.92 -17.23 -0.19 2.43 16 23 N -0.57 -7.76 10.46 -13.93 -0.15 -7.90 16 24 H 0.03 0.47 6.86 -51.93 -0.36 0.11 16 25 H 0.07 1.45 6.62 -51.93 -0.34 1.11 16 26 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 27 H 0.05 0.83 8.14 -51.93 -0.42 0.40 16 28 H 0.07 1.45 6.62 -51.93 -0.34 1.10 16 29 H 0.03 0.47 6.86 -51.93 -0.36 0.12 16 30 H 0.02 0.42 7.20 -51.93 -0.37 0.05 16 31 H 0.01 0.32 7.57 -51.93 -0.39 -0.08 16 32 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 33 H 0.07 1.09 8.14 -51.93 -0.42 0.66 16 34 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 35 H 0.42 5.70 6.28 -40.82 -0.26 5.44 16 36 H 0.17 0.97 8.00 -52.49 -0.42 0.55 16 37 H 0.12 0.42 7.94 -51.93 -0.41 0.01 16 38 H 0.17 1.42 8.06 -52.49 -0.42 1.00 16 LS Contribution 319.81 15.07 4.82 4.82 Total: -1.00 -30.66 319.81 -7.87 -38.53 By element: Atomic # 1 Polarization: 6.80 SS G_CDS: -4.85 Total: 1.95 kcal Atomic # 6 Polarization: -2.84 SS G_CDS: -3.43 Total: -6.27 kcal Atomic # 7 Polarization: -52.03 SS G_CDS: 0.18 Total: -51.86 kcal Atomic # 9 Polarization: -3.64 SS G_CDS: 0.08 Total: -3.56 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -4.67 Total: 16.38 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -30.66 -7.87 -38.53 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000450529861.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.716 kcal (2) G-P(sol) polarization free energy of solvation -30.660 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.377 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.874 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.534 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.251 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds