Wall clock time and date at job start Tue Mar 31 2020 05:42:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52996 * 109.47346 * 2 1 4 4 C 1.53001 * 109.46637 * 239.99940 * 2 1 3 5 5 C 1.50697 * 109.47291 * 60.00213 * 4 2 1 6 6 H 1.08006 * 119.99920 * 359.97438 * 5 4 2 7 7 C 1.37876 * 120.00428 * 179.97438 * 5 4 2 8 8 N 1.31520 * 120.00162 * 179.97438 * 7 5 4 9 9 Si 1.86798 * 119.99868 * 359.97438 * 7 5 4 10 10 H 1.48504 * 109.47023 * 90.00014 * 9 7 5 11 11 H 1.48496 * 109.47251 * 210.00457 * 9 7 5 12 12 H 1.48498 * 109.47139 * 330.00202 * 9 7 5 13 13 C 1.53000 * 109.47233 * 120.00458 * 2 1 3 14 14 N 1.46499 * 109.46840 * 299.99500 * 13 2 1 15 15 C 1.38408 * 119.99924 * 179.97438 * 14 13 2 16 16 N 1.32489 * 119.21620 * 359.73928 * 15 14 13 17 17 C 1.32281 * 120.74113 * 179.71630 * 16 15 14 18 18 C 1.38609 * 119.19298 * 0.53834 * 17 16 15 19 19 C 1.50703 * 120.71991 * 179.70859 * 18 17 16 20 20 F 1.39894 * 109.46886 * 120.02207 * 19 18 17 21 21 F 1.39900 * 109.47012 * 240.02476 * 19 18 17 22 22 C 1.38607 * 118.55889 * 359.73634 * 18 17 16 23 23 N 1.32273 * 119.19831 * 359.97438 * 22 18 17 24 24 H 1.09000 * 109.46986 * 299.99746 * 1 2 3 25 25 H 1.08993 * 109.47662 * 59.99968 * 1 2 3 26 26 H 1.09002 * 109.47075 * 180.02562 * 1 2 3 27 27 H 1.08992 * 109.47554 * 180.02562 * 3 2 1 28 28 H 1.09004 * 109.47108 * 300.00289 * 3 2 1 29 29 H 1.09000 * 109.46870 * 60.00183 * 3 2 1 30 30 H 1.09001 * 109.47109 * 179.97438 * 4 2 1 31 31 H 1.09002 * 109.47508 * 299.99876 * 4 2 1 32 32 H 0.96996 * 119.99309 * 179.97438 * 8 7 5 33 33 H 1.09002 * 109.47398 * 59.99826 * 13 2 1 34 34 H 1.09001 * 109.47194 * 180.02562 * 13 2 1 35 35 H 0.97000 * 120.00420 * 0.02562 * 14 13 2 36 36 H 1.07996 * 120.40618 * 180.24664 * 17 16 15 37 37 H 1.09000 * 109.46782 * 0.02628 * 19 18 17 38 38 H 1.08000 * 120.39788 * 179.97438 * 22 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0399 -0.7213 -1.2493 5 6 1.5376 -0.0109 -2.4797 6 1 0.9164 0.8671 -2.3806 7 6 1.8710 -0.4816 -3.7320 8 7 1.4321 0.1381 -4.8058 9 14 2.9460 -1.9996 -3.9035 10 1 2.0882 -3.2110 -3.9490 11 1 3.7379 -1.9064 -5.1562 12 1 3.8664 -2.0882 -2.7415 13 6 2.0401 -0.7213 1.2492 14 7 1.5518 -0.0307 2.4454 15 6 1.8857 -0.5040 3.7024 16 7 2.6436 -1.5858 3.8059 17 6 2.9855 -2.0609 4.9921 18 6 2.5318 -1.4191 6.1338 19 6 2.8951 -1.9347 7.5026 20 9 3.5946 -0.9459 8.2027 21 9 1.7288 -2.2643 8.2014 22 6 1.7363 -0.2933 5.9894 23 7 1.4360 0.1329 4.7737 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 3.1300 1.4425 -0.0005 28 1 1.6767 1.9563 -0.8900 29 1 1.6768 1.9562 0.8900 30 1 3.1299 -0.7209 -1.2496 31 1 1.6766 -1.7490 -1.2493 32 1 1.6670 -0.1929 -5.6868 33 1 1.6767 -1.7490 1.2492 34 1 3.1301 -0.7209 1.2494 35 1 0.9939 0.7578 2.3565 36 1 3.6068 -2.9408 5.0701 37 1 3.5215 -2.8210 7.4025 38 1 1.3662 0.2295 6.8588 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000450529861.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:42:50 Heat of formation + Delta-G solvation = -77.493216 kcal Electronic energy + Delta-G solvation = -21966.372597 eV Core-core repulsion = 18285.687029 eV Total energy + Delta-G solvation = -3680.685567 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 285.135 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -49.85445 -47.85735 -42.01786 -39.37968 -36.16499 -34.77960 -34.38318 -32.61083 -29.73438 -28.04069 -28.00444 -26.39170 -25.71665 -24.30407 -23.06603 -20.14096 -19.08003 -18.92910 -18.86143 -18.13295 -18.09999 -17.39004 -16.45570 -16.32633 -16.09239 -15.45717 -15.41973 -15.06323 -14.78213 -14.47007 -14.25912 -14.24313 -14.20736 -14.10019 -14.08193 -13.01216 -12.99532 -12.82947 -12.72057 -12.32100 -12.18561 -11.97133 -11.78101 -11.68699 -11.63160 -11.33309 -11.22576 -10.93101 -10.69960 -10.20514 -9.20869 -8.21637 -6.22648 -0.06189 0.15665 1.38260 1.40419 1.50743 1.80592 2.40485 2.74221 2.85729 3.13931 3.16784 3.39470 3.62750 3.65608 3.70701 3.89938 4.03613 4.13993 4.18869 4.42965 4.59310 4.69952 4.71886 4.74152 4.91256 4.96824 5.05506 5.15377 5.28068 5.36284 5.39059 5.52394 5.65223 5.67688 5.76609 6.00173 6.36486 6.39277 6.84687 7.23121 7.40248 8.94260 Molecular weight = 285.13amu Principal moments of inertia in cm(-1) A = 0.036044 B = 0.003064 C = 0.002931 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 776.636492 B = 9136.721054 C = 9552.335172 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.059 4.059 3 C -0.124 4.124 4 C 0.001 3.999 5 C -0.505 4.505 6 H 0.047 0.953 7 C 0.003 3.997 8 N -0.954 5.954 9 Si 0.939 3.061 10 H -0.271 1.271 11 H -0.291 1.291 12 H -0.246 1.246 13 C 0.158 3.842 14 N -0.680 5.680 15 C 0.564 3.436 16 N -0.589 5.589 17 C 0.233 3.767 18 C -0.354 4.354 19 C 0.336 3.664 20 F -0.212 7.212 21 F -0.212 7.212 22 C 0.223 3.777 23 N -0.594 5.594 24 H 0.058 0.942 25 H 0.044 0.956 26 H 0.048 0.952 27 H 0.047 0.953 28 H 0.044 0.956 29 H 0.059 0.941 30 H 0.020 0.980 31 H 0.018 0.982 32 H 0.262 0.738 33 H 0.065 0.935 34 H 0.064 0.936 35 H 0.417 0.583 36 H 0.214 0.786 37 H 0.166 0.834 38 H 0.184 0.816 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.321 -6.059 25.790 26.842 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.060 4.060 3 C -0.181 4.181 4 C -0.037 4.037 5 C -0.543 4.543 6 H 0.066 0.934 7 C -0.193 4.193 8 N -0.596 5.596 9 Si 0.763 3.237 10 H -0.196 1.196 11 H -0.217 1.217 12 H -0.169 1.169 13 C 0.034 3.966 14 N -0.315 5.315 15 C 0.207 3.793 16 N -0.312 5.312 17 C 0.064 3.936 18 C -0.364 4.364 19 C 0.282 3.718 20 F -0.194 7.194 21 F -0.194 7.194 22 C 0.054 3.946 23 N -0.317 5.317 24 H 0.077 0.923 25 H 0.063 0.937 26 H 0.067 0.933 27 H 0.067 0.933 28 H 0.063 0.937 29 H 0.077 0.923 30 H 0.038 0.962 31 H 0.036 0.964 32 H 0.071 0.929 33 H 0.083 0.917 34 H 0.083 0.917 35 H 0.257 0.743 36 H 0.231 0.769 37 H 0.183 0.817 38 H 0.201 0.799 Dipole moment (debyes) X Y Z Total from point charges 4.110 -5.767 24.471 25.475 hybrid contribution 0.076 -0.143 -0.056 0.171 sum 4.187 -5.909 24.416 25.467 Atomic orbital electron populations 1.21696 0.94358 1.01263 1.00785 1.20587 0.96169 0.96020 0.93224 1.21691 1.00369 0.95237 1.00789 1.19526 0.96162 0.95515 0.92514 1.21385 1.30311 1.12294 0.90315 0.93448 1.25895 0.97517 1.00149 0.95761 1.70060 1.48190 1.42844 0.98498 0.85829 0.79780 0.80016 0.78056 1.19611 1.21699 1.16926 1.21327 0.98533 0.95321 0.81381 1.44483 1.54171 1.32051 1.00817 1.19698 0.86481 0.86165 0.86925 1.68148 1.19235 1.14575 1.29216 1.23488 0.89576 0.95950 0.84543 1.21905 1.11946 1.04497 0.98025 1.20312 0.80254 0.90310 0.80934 1.92998 1.79194 1.66115 1.81050 1.93000 1.52310 1.92939 1.81108 1.23137 0.87159 0.90197 0.94088 1.68027 1.29525 1.35090 0.99040 0.92266 0.93695 0.93323 0.93347 0.93692 0.92251 0.96207 0.96365 0.92884 0.91682 0.91747 0.74346 0.76921 0.81679 0.79865 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.24 8.05 71.98 0.58 -3.66 16 2 C -0.06 -2.08 0.54 -52.18 -0.03 -2.11 16 3 C -0.12 -4.23 8.05 71.98 0.58 -3.66 16 4 C 0.00 0.03 3.11 29.85 0.09 0.12 16 5 C -0.50 -27.22 8.20 25.60 0.21 -27.01 16 6 H 0.05 2.79 5.92 -2.91 -0.02 2.77 16 7 C 0.00 0.16 5.47 84.65 0.46 0.62 16 8 N -0.95 -58.84 13.96 21.45 0.30 -58.54 16 9 Si 0.94 43.36 27.47 68.60 1.88 45.24 16 10 H -0.27 -12.13 7.11 99.48 0.71 -11.42 16 11 H -0.29 -13.44 7.11 99.48 0.71 -12.73 16 12 H -0.25 -10.47 6.54 99.48 0.65 -9.82 16 13 C 0.16 4.74 4.54 86.38 0.39 5.13 16 14 N -0.68 -18.56 5.11 -351.04 -1.79 -20.35 16 15 C 0.56 15.25 8.43 261.49 2.20 17.46 16 16 N -0.59 -14.45 9.59 -197.98 -1.90 -16.35 16 17 C 0.23 3.74 10.95 84.71 0.93 4.67 16 18 C -0.35 -5.54 5.39 -19.69 -0.11 -5.65 16 19 C 0.34 3.60 5.49 71.24 0.39 3.99 16 20 F -0.21 -3.18 17.27 44.97 0.78 -2.40 16 21 F -0.21 -3.18 17.27 44.97 0.78 -2.40 16 22 C 0.22 4.42 10.92 84.71 0.93 5.34 16 23 N -0.59 -15.18 10.46 -197.99 -2.07 -17.25 16 24 H 0.06 1.68 6.86 -2.39 -0.02 1.67 16 25 H 0.04 1.79 6.62 -2.39 -0.02 1.77 16 26 H 0.05 1.63 8.14 -2.39 -0.02 1.61 16 27 H 0.05 1.63 8.14 -2.39 -0.02 1.61 16 28 H 0.04 1.79 6.62 -2.38 -0.02 1.78 16 29 H 0.06 1.69 6.86 -2.39 -0.02 1.67 16 30 H 0.02 0.86 7.20 -2.39 -0.02 0.84 16 31 H 0.02 0.78 7.57 -2.39 -0.02 0.76 16 32 H 0.26 15.27 8.31 -92.71 -0.77 14.50 16 33 H 0.06 1.98 8.14 -2.39 -0.02 1.96 16 34 H 0.06 1.97 8.14 -2.39 -0.02 1.95 16 35 H 0.42 10.83 6.28 -92.71 -0.58 10.25 16 36 H 0.21 1.33 8.00 -2.91 -0.02 1.30 16 37 H 0.17 0.28 7.94 -2.39 -0.02 0.26 16 38 H 0.18 2.79 8.06 -2.91 -0.02 2.77 16 Total: -1.00 -68.35 319.81 5.06 -63.29 By element: Atomic # 1 Polarization: 13.05 SS G_CDS: 0.45 Total: 13.50 kcal Atomic # 6 Polarization: -11.37 SS G_CDS: 6.63 Total: -4.74 kcal Atomic # 7 Polarization: -107.03 SS G_CDS: -5.46 Total: -112.49 kcal Atomic # 9 Polarization: -6.36 SS G_CDS: 1.55 Total: -4.81 kcal Atomic # 14 Polarization: 43.36 SS G_CDS: 1.88 Total: 45.24 kcal Total: -68.35 5.06 -63.29 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000450529861.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.199 kcal (2) G-P(sol) polarization free energy of solvation -68.350 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.550 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.057 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.294 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.493 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds