Wall clock time and date at job start Tue Mar 31 2020 05:24:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42906 * 113.99872 * 2 1 4 4 C 1.53007 * 109.47124 * 180.02562 * 3 2 1 5 5 N 1.46497 * 109.46994 * 64.16642 * 4 3 2 6 6 C 1.36938 * 119.99770 * 84.87617 * 5 4 3 7 7 H 1.08003 * 120.00356 * 39.52975 * 6 5 4 8 8 C 1.38818 * 119.99748 * 219.53515 * 6 5 4 9 9 N 1.31615 * 119.99831 * 212.75235 * 8 6 5 10 10 Si 1.86800 * 119.99867 * 32.74987 * 8 6 5 11 11 H 1.48501 * 109.47025 * 92.63310 * 10 8 6 12 12 H 1.48500 * 109.46952 * 212.63278 * 10 8 6 13 13 H 1.48498 * 109.47203 * 332.63256 * 10 8 6 14 14 C 1.46502 * 120.00050 * 264.59402 * 5 4 3 15 15 C 1.50698 * 109.46922 * 275.79890 * 14 5 4 16 16 C 1.38241 * 120.00212 * 274.81808 * 15 14 5 17 17 C 1.38231 * 119.99799 * 179.76872 * 16 15 14 18 18 C 1.38232 * 120.00474 * 0.48576 * 17 16 15 19 19 C 1.50698 * 120.00190 * 179.76868 * 18 17 16 20 20 F 1.39901 * 109.47115 * 120.02274 * 19 18 17 21 21 F 1.39907 * 109.46909 * 240.01814 * 19 18 17 22 22 C 1.38241 * 119.99938 * 359.78800 * 18 17 16 23 23 C 1.38238 * 119.99851 * 359.95815 * 22 18 17 24 24 H 1.09000 * 109.46500 * 179.97438 * 1 2 3 25 25 H 1.08995 * 109.46742 * 300.00373 * 1 2 3 26 26 H 1.08998 * 109.46582 * 60.00473 * 1 2 3 27 27 H 1.09000 * 109.47081 * 59.99464 * 3 2 1 28 28 H 1.09003 * 109.47114 * 299.99501 * 3 2 1 29 29 H 1.09006 * 109.46543 * 304.16383 * 4 3 2 30 30 H 1.09004 * 109.46753 * 184.17002 * 4 3 2 31 31 H 0.97004 * 119.99796 * 179.97438 * 9 8 6 32 32 H 1.08996 * 109.46956 * 35.79628 * 14 5 4 33 33 H 1.08996 * 109.47135 * 155.80134 * 14 5 4 34 34 H 1.07998 * 119.99600 * 0.02562 * 16 15 14 35 35 H 1.08007 * 119.99893 * 180.25296 * 17 16 15 36 36 H 1.08993 * 109.47578 * 0.02562 * 19 18 17 37 37 H 1.07996 * 120.00195 * 179.97438 * 22 18 17 38 38 H 1.07994 * 119.99847 * 179.97438 * 23 22 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5355 1.1847 -0.0006 5 7 3.9743 0.5464 -1.2441 6 6 4.1623 1.3006 -2.3715 7 1 4.6120 2.2798 -2.2975 8 6 3.7747 0.8066 -3.6096 9 7 4.4557 1.1282 -4.6889 10 14 2.2865 -0.3144 -3.7436 11 1 1.0778 0.4995 -4.0298 12 1 2.4986 -1.2893 -4.8434 13 1 2.0999 -1.0445 -2.4640 14 6 4.2179 -0.8978 -1.2798 15 6 5.6139 -1.1839 -0.7898 16 6 6.6810 -1.1198 -1.6663 17 6 7.9621 -1.3776 -1.2156 18 6 8.1751 -1.7094 0.1093 19 6 9.5711 -1.9956 0.5993 20 9 9.9047 -1.0898 1.6121 21 9 9.6307 -3.2998 1.1020 22 6 7.1074 -1.7791 0.9846 23 6 5.8269 -1.5161 0.5352 24 1 -0.3632 -1.0277 -0.0005 25 1 -0.3632 0.5139 0.8899 26 1 -0.3632 0.5138 -0.8900 27 1 1.6885 1.8465 0.8899 28 1 1.6887 1.8464 -0.8900 29 1 3.8525 0.5806 0.8495 30 1 3.9786 2.1779 0.0741 31 1 4.1851 0.7827 -5.5540 32 1 3.4967 -1.4038 -0.6381 33 1 4.1107 -1.2591 -2.3025 34 1 6.5141 -0.8642 -2.7023 35 1 8.7962 -1.3235 -1.8996 36 1 10.2746 -1.8920 -0.2267 37 1 7.2737 -2.0387 2.0196 38 1 4.9927 -1.5709 1.2189 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000453595806.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:24:57 Heat of formation + Delta-G solvation = -100.204779 kcal Electronic energy + Delta-G solvation = -22782.877149 eV Core-core repulsion = 19068.913983 eV Total energy + Delta-G solvation = -3713.963166 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 285.128 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -48.85935 -46.85028 -38.97471 -37.49311 -35.58883 -32.23375 -31.68260 -30.56474 -29.08207 -27.01237 -25.86732 -24.33181 -23.29026 -22.31494 -20.89915 -20.08420 -17.31849 -17.20481 -17.08267 -16.89408 -15.86000 -15.55728 -15.33392 -14.75715 -14.41672 -14.33088 -13.94046 -13.83613 -13.76813 -13.24339 -13.08477 -12.90798 -12.82321 -12.40913 -12.23796 -11.83481 -11.67332 -11.42221 -11.23077 -10.80405 -10.71790 -10.68985 -10.43557 -10.29703 -10.06298 -9.61150 -9.10800 -8.54652 -8.49987 -8.33445 -6.85827 -6.15590 -3.45852 1.55558 1.83221 3.35401 3.48248 3.62121 3.89011 4.06492 4.32690 4.35027 4.53298 4.72041 5.03788 5.19969 5.23666 5.30341 5.33680 5.52905 5.61695 5.66124 5.85933 5.88799 5.95904 5.99175 6.01470 6.08990 6.21711 6.32435 6.46120 6.56534 6.63565 6.72931 6.79434 6.87492 7.26317 7.41192 7.70218 7.95093 8.33486 8.92342 9.63741 10.09700 10.99031 Molecular weight = 285.13amu Principal moments of inertia in cm(-1) A = 0.018947 B = 0.005102 C = 0.004446 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1477.483212 B = 5486.922379 C = 6296.862712 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.380 6.380 3 C 0.039 3.961 4 C 0.150 3.850 5 N -0.583 5.583 6 C -0.280 4.280 7 H 0.074 0.926 8 C 0.052 3.948 9 N -0.878 5.878 10 Si 0.839 3.161 11 H -0.292 1.292 12 H -0.298 1.298 13 H -0.243 1.243 14 C 0.181 3.819 15 C -0.058 4.058 16 C -0.095 4.095 17 C -0.090 4.090 18 C -0.193 4.193 19 C 0.315 3.685 20 F -0.205 7.205 21 F -0.206 7.206 22 C -0.088 4.088 23 C -0.123 4.123 24 H 0.076 0.924 25 H 0.032 0.968 26 H 0.034 0.966 27 H 0.031 0.969 28 H 0.051 0.949 29 H 0.049 0.951 30 H 0.064 0.936 31 H 0.264 0.736 32 H 0.056 0.944 33 H 0.063 0.937 34 H 0.135 0.865 35 H 0.121 0.879 36 H 0.113 0.887 37 H 0.116 0.884 38 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.577 -5.091 9.501 11.083 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.298 6.298 3 C -0.039 4.039 4 C 0.023 3.977 5 N -0.303 5.303 6 C -0.408 4.408 7 H 0.091 0.909 8 C -0.151 4.151 9 N -0.516 5.516 10 Si 0.666 3.334 11 H -0.220 1.220 12 H -0.225 1.225 13 H -0.166 1.166 14 C 0.056 3.944 15 C -0.061 4.061 16 C -0.114 4.114 17 C -0.108 4.108 18 C -0.194 4.194 19 C 0.262 3.738 20 F -0.186 7.186 21 F -0.187 7.187 22 C -0.106 4.106 23 C -0.142 4.142 24 H 0.094 0.906 25 H 0.050 0.950 26 H 0.053 0.947 27 H 0.050 0.950 28 H 0.070 0.930 29 H 0.068 0.932 30 H 0.082 0.918 31 H 0.073 0.927 32 H 0.075 0.925 33 H 0.081 0.919 34 H 0.153 0.847 35 H 0.139 0.861 36 H 0.130 0.870 37 H 0.134 0.866 38 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 2.716 -5.242 9.336 11.046 hybrid contribution -1.131 -0.197 -0.209 1.167 sum 1.585 -5.439 9.127 10.742 Atomic orbital electron populations 1.22626 0.82980 1.01703 0.99143 1.87929 1.18003 1.28725 1.95176 1.23413 0.97715 0.84048 0.98759 1.21015 0.89332 0.97801 0.89513 1.43906 1.75677 1.02980 1.07748 1.18634 1.36207 1.02448 0.83473 0.90893 1.25500 0.97207 0.97225 0.95186 1.70050 1.36436 1.45612 0.99473 0.87406 0.86285 0.81190 0.78548 1.21986 1.22452 1.16597 1.20315 0.88610 0.85912 0.99591 1.21316 0.99330 0.92294 0.93129 1.21210 0.91307 0.97748 1.01128 1.20881 0.97838 0.98480 0.93643 1.20084 0.93675 1.09692 0.95944 1.20395 0.95822 0.71641 0.85975 1.92988 1.93682 1.67722 1.64216 1.92983 1.97510 1.38754 1.89490 1.20774 0.92497 0.98746 0.98600 1.21038 0.96174 1.01105 0.95862 0.90577 0.94953 0.94731 0.95045 0.93022 0.93205 0.91788 0.92650 0.92545 0.91852 0.84694 0.86118 0.86960 0.86594 0.86165 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.48 11.01 101.05 1.11 1.60 16 2 O -0.38 -7.05 9.97 -35.23 -0.35 -7.41 16 3 C 0.04 0.71 6.26 37.16 0.23 0.94 16 4 C 0.15 2.85 6.08 -4.04 -0.02 2.82 16 5 N -0.58 -12.99 1.93 -174.60 -0.34 -13.33 16 6 C -0.28 -7.28 9.76 -15.06 -0.15 -7.43 16 7 H 0.07 2.08 8.06 -52.48 -0.42 1.66 16 8 C 0.05 1.40 4.99 -17.43 -0.09 1.32 16 9 N -0.88 -25.14 13.97 55.49 0.78 -24.36 16 10 Si 0.84 20.67 26.44 -169.99 -4.49 16.17 16 11 H -0.29 -7.40 7.11 56.52 0.40 -7.00 16 12 H -0.30 -7.46 7.11 56.52 0.40 -7.06 16 13 H -0.24 -5.76 5.92 56.52 0.33 -5.42 16 14 C 0.18 3.81 3.92 -5.19 -0.02 3.79 16 15 C -0.06 -1.09 5.45 -104.62 -0.57 -1.66 16 16 C -0.10 -1.78 9.72 -39.58 -0.38 -2.17 16 17 C -0.09 -1.42 9.67 -39.59 -0.38 -1.81 16 18 C -0.19 -2.93 5.37 -104.62 -0.56 -3.49 16 19 C 0.32 4.06 5.45 36.00 0.20 4.26 16 20 F -0.20 -2.93 17.26 2.25 0.04 -2.89 16 21 F -0.21 -2.85 17.26 2.25 0.04 -2.82 16 22 C -0.09 -1.38 9.60 -39.58 -0.38 -1.76 16 23 C -0.12 -2.05 9.67 -39.58 -0.38 -2.44 16 24 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 25 H 0.03 0.40 8.14 -51.93 -0.42 -0.02 16 26 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 27 H 0.03 0.47 8.14 -51.93 -0.42 0.05 16 28 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 29 H 0.05 0.87 8.02 -51.93 -0.42 0.46 16 30 H 0.06 1.19 8.08 -51.93 -0.42 0.77 16 31 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 32 H 0.06 1.15 7.43 -51.93 -0.39 0.76 16 33 H 0.06 1.44 4.85 -51.93 -0.25 1.19 16 34 H 0.14 2.77 8.06 -52.49 -0.42 2.35 16 35 H 0.12 1.56 7.95 -52.48 -0.42 1.14 16 36 H 0.11 1.08 7.88 -51.93 -0.41 0.67 16 37 H 0.12 1.62 8.06 -52.49 -0.42 1.20 16 38 H 0.12 1.82 8.06 -52.49 -0.42 1.40 16 LS Contribution 329.38 15.07 4.96 4.96 Total: -1.00 -29.33 329.38 -6.07 -35.40 By element: Atomic # 1 Polarization: 5.60 SS G_CDS: -5.31 Total: 0.29 kcal Atomic # 6 Polarization: -4.63 SS G_CDS: -1.40 Total: -6.03 kcal Atomic # 7 Polarization: -38.13 SS G_CDS: 0.44 Total: -37.70 kcal Atomic # 8 Polarization: -7.05 SS G_CDS: -0.35 Total: -7.41 kcal Atomic # 9 Polarization: -5.78 SS G_CDS: 0.08 Total: -5.70 kcal Atomic # 14 Polarization: 20.67 SS G_CDS: -4.49 Total: 16.17 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -29.33 -6.07 -35.40 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000453595806.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.802 kcal (2) G-P(sol) polarization free energy of solvation -29.329 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.131 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.073 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.402 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.205 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds