Wall clock time and date at job start Tue Mar 31 2020 05:24:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42906 * 113.99872 * 2 1 4 4 C 1.53007 * 109.47124 * 180.02562 * 3 2 1 5 5 N 1.46497 * 109.46994 * 64.16642 * 4 3 2 6 6 C 1.36938 * 119.99770 * 84.87617 * 5 4 3 7 7 H 1.08003 * 120.00356 * 39.52975 * 6 5 4 8 8 C 1.38818 * 119.99748 * 219.53515 * 6 5 4 9 9 N 1.31615 * 119.99831 * 212.75235 * 8 6 5 10 10 Si 1.86800 * 119.99867 * 32.74987 * 8 6 5 11 11 H 1.48501 * 109.47025 * 92.63310 * 10 8 6 12 12 H 1.48500 * 109.46952 * 212.63278 * 10 8 6 13 13 H 1.48498 * 109.47203 * 332.63256 * 10 8 6 14 14 C 1.46502 * 120.00050 * 264.59402 * 5 4 3 15 15 C 1.50698 * 109.46922 * 275.79890 * 14 5 4 16 16 C 1.38241 * 120.00212 * 274.81808 * 15 14 5 17 17 C 1.38231 * 119.99799 * 179.76872 * 16 15 14 18 18 C 1.38232 * 120.00474 * 0.48576 * 17 16 15 19 19 C 1.50698 * 120.00190 * 179.76868 * 18 17 16 20 20 F 1.39901 * 109.47115 * 120.02274 * 19 18 17 21 21 F 1.39907 * 109.46909 * 240.01814 * 19 18 17 22 22 C 1.38241 * 119.99938 * 359.78800 * 18 17 16 23 23 C 1.38238 * 119.99851 * 359.95815 * 22 18 17 24 24 H 1.09000 * 109.46500 * 179.97438 * 1 2 3 25 25 H 1.08995 * 109.46742 * 300.00373 * 1 2 3 26 26 H 1.08998 * 109.46582 * 60.00473 * 1 2 3 27 27 H 1.09000 * 109.47081 * 59.99464 * 3 2 1 28 28 H 1.09003 * 109.47114 * 299.99501 * 3 2 1 29 29 H 1.09006 * 109.46543 * 304.16383 * 4 3 2 30 30 H 1.09004 * 109.46753 * 184.17002 * 4 3 2 31 31 H 0.97004 * 119.99796 * 179.97438 * 9 8 6 32 32 H 1.08996 * 109.46956 * 35.79628 * 14 5 4 33 33 H 1.08996 * 109.47135 * 155.80134 * 14 5 4 34 34 H 1.07998 * 119.99600 * 0.02562 * 16 15 14 35 35 H 1.08007 * 119.99893 * 180.25296 * 17 16 15 36 36 H 1.08993 * 109.47578 * 0.02562 * 19 18 17 37 37 H 1.07996 * 120.00195 * 179.97438 * 22 18 17 38 38 H 1.07994 * 119.99847 * 179.97438 * 23 22 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5355 1.1847 -0.0006 5 7 3.9743 0.5464 -1.2441 6 6 4.1623 1.3006 -2.3715 7 1 4.6120 2.2798 -2.2975 8 6 3.7747 0.8066 -3.6096 9 7 4.4557 1.1282 -4.6889 10 14 2.2865 -0.3144 -3.7436 11 1 1.0778 0.4995 -4.0298 12 1 2.4986 -1.2893 -4.8434 13 1 2.0999 -1.0445 -2.4640 14 6 4.2179 -0.8978 -1.2798 15 6 5.6139 -1.1839 -0.7898 16 6 6.6810 -1.1198 -1.6663 17 6 7.9621 -1.3776 -1.2156 18 6 8.1751 -1.7094 0.1093 19 6 9.5711 -1.9956 0.5993 20 9 9.9047 -1.0898 1.6121 21 9 9.6307 -3.2998 1.1020 22 6 7.1074 -1.7791 0.9846 23 6 5.8269 -1.5161 0.5352 24 1 -0.3632 -1.0277 -0.0005 25 1 -0.3632 0.5139 0.8899 26 1 -0.3632 0.5138 -0.8900 27 1 1.6885 1.8465 0.8899 28 1 1.6887 1.8464 -0.8900 29 1 3.8525 0.5806 0.8495 30 1 3.9786 2.1779 0.0741 31 1 4.1851 0.7827 -5.5540 32 1 3.4967 -1.4038 -0.6381 33 1 4.1107 -1.2591 -2.3025 34 1 6.5141 -0.8642 -2.7023 35 1 8.7962 -1.3235 -1.8996 36 1 10.2746 -1.8920 -0.2267 37 1 7.2737 -2.0387 2.0196 38 1 4.9927 -1.5709 1.2189 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000453595806.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:24:56 Heat of formation + Delta-G solvation = -116.291319 kcal Electronic energy + Delta-G solvation = -22783.574714 eV Core-core repulsion = 19068.913983 eV Total energy + Delta-G solvation = -3714.660730 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 285.128 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -49.90646 -47.90263 -40.34002 -38.89311 -37.21166 -34.01575 -33.25961 -31.87792 -30.57537 -28.48614 -27.17524 -25.86381 -24.79272 -23.64408 -22.31284 -21.67108 -18.96255 -18.36102 -18.17632 -18.12555 -17.36665 -16.99700 -16.89226 -16.31138 -15.88028 -15.70499 -15.31360 -15.22457 -14.88171 -14.80839 -14.56153 -14.29758 -14.26009 -13.86170 -13.53002 -13.31891 -13.05733 -12.90451 -12.65637 -12.52548 -12.30711 -12.20592 -11.89560 -11.80988 -11.67786 -11.45406 -10.60397 -10.44317 -9.82447 -9.72498 -8.70779 -8.25768 -5.51272 0.24022 0.51294 1.34790 1.44167 1.61535 2.46966 2.68572 2.84346 3.03663 3.09258 3.32550 3.55661 3.69018 4.07350 4.11363 4.16520 4.17255 4.39863 4.45755 4.53369 4.55223 4.59366 4.64194 4.65662 4.79781 4.80339 4.96682 4.98833 5.09388 5.16264 5.20062 5.44373 5.47883 5.84285 5.93691 6.05976 6.22203 6.40940 7.01816 7.65847 8.13999 8.93425 Molecular weight = 285.13amu Principal moments of inertia in cm(-1) A = 0.018947 B = 0.005102 C = 0.004446 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1477.483212 B = 5486.922379 C = 6296.862712 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.403 6.403 3 C 0.046 3.954 4 C 0.145 3.855 5 N -0.593 5.593 6 C -0.259 4.259 7 H 0.039 0.961 8 C 0.008 3.992 9 N -0.923 5.923 10 Si 0.896 3.104 11 H -0.302 1.302 12 H -0.305 1.305 13 H -0.229 1.229 14 C 0.187 3.813 15 C -0.076 4.076 16 C -0.119 4.119 17 C -0.084 4.084 18 C -0.190 4.190 19 C 0.318 3.682 20 F -0.212 7.212 21 F -0.210 7.210 22 C -0.089 4.089 23 C -0.120 4.120 24 H 0.092 0.908 25 H 0.059 0.941 26 H 0.025 0.975 27 H 0.067 0.933 28 H 0.026 0.974 29 H 0.069 0.931 30 H 0.064 0.936 31 H 0.262 0.738 32 H 0.065 0.935 33 H 0.038 0.962 34 H 0.104 0.896 35 H 0.150 0.850 36 H 0.154 0.846 37 H 0.137 0.863 38 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.942 -6.235 11.984 13.825 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.322 6.322 3 C -0.032 4.032 4 C 0.020 3.980 5 N -0.314 5.314 6 C -0.388 4.388 7 H 0.057 0.943 8 C -0.191 4.191 9 N -0.564 5.564 10 Si 0.723 3.277 11 H -0.230 1.230 12 H -0.233 1.233 13 H -0.151 1.151 14 C 0.061 3.939 15 C -0.079 4.079 16 C -0.138 4.138 17 C -0.102 4.102 18 C -0.191 4.191 19 C 0.264 3.736 20 F -0.193 7.193 21 F -0.191 7.191 22 C -0.107 4.107 23 C -0.139 4.139 24 H 0.110 0.890 25 H 0.077 0.923 26 H 0.043 0.957 27 H 0.085 0.915 28 H 0.044 0.956 29 H 0.088 0.912 30 H 0.082 0.918 31 H 0.071 0.929 32 H 0.084 0.916 33 H 0.056 0.944 34 H 0.123 0.877 35 H 0.168 0.832 36 H 0.171 0.829 37 H 0.155 0.845 38 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 3.068 -6.405 11.867 13.829 hybrid contribution -1.171 0.150 -0.856 1.458 sum 1.897 -6.255 11.011 12.805 Atomic orbital electron populations 1.22832 0.81048 1.03124 0.99999 1.87874 1.20161 1.28854 1.95357 1.23246 0.96595 0.84181 0.99206 1.21141 0.90464 0.97903 0.88465 1.43975 1.76481 1.03284 1.07628 1.18446 1.34153 1.01396 0.84834 0.94316 1.25896 0.99036 0.99154 0.95051 1.70131 1.38100 1.48312 0.99899 0.86520 0.83105 0.79490 0.78606 1.22977 1.23281 1.15148 1.20164 0.90369 0.84908 0.98418 1.21101 0.97995 0.94436 0.94380 1.21096 0.93065 0.99698 0.99915 1.21092 0.97353 0.97167 0.94630 1.20424 0.95201 1.08012 0.95491 1.20638 0.95132 0.71096 0.86692 1.92979 1.93583 1.68023 1.64726 1.92979 1.97447 1.39086 1.89638 1.21093 0.92139 0.97748 0.99763 1.21145 0.97424 1.00439 0.94848 0.88978 0.92270 0.95657 0.91511 0.95558 0.91224 0.91793 0.92910 0.91646 0.94382 0.87743 0.83215 0.82915 0.84500 0.84498 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.71 11.01 113.37 1.25 1.96 16 2 O -0.40 -14.08 9.97 -148.98 -1.49 -15.57 16 3 C 0.05 1.57 6.26 71.98 0.45 2.03 16 4 C 0.15 5.36 6.08 86.38 0.53 5.89 16 5 N -0.59 -26.49 1.93 -706.32 -1.36 -27.86 16 6 C -0.26 -13.91 9.76 84.03 0.82 -13.09 16 7 H 0.04 2.33 8.06 -2.91 -0.02 2.30 16 8 C 0.01 0.44 4.99 84.86 0.42 0.86 16 9 N -0.92 -55.19 13.97 21.65 0.30 -54.88 16 10 Si 0.90 44.25 26.44 68.60 1.81 46.06 16 11 H -0.30 -15.19 7.11 99.48 0.71 -14.48 16 12 H -0.31 -15.32 7.11 99.48 0.71 -14.61 16 13 H -0.23 -10.64 5.92 99.48 0.59 -10.05 16 14 C 0.19 7.80 3.92 85.63 0.34 8.14 16 15 C -0.08 -2.85 5.45 -19.86 -0.11 -2.96 16 16 C -0.12 -4.47 9.72 22.27 0.22 -4.26 16 17 C -0.08 -2.51 9.67 22.27 0.22 -2.29 16 18 C -0.19 -5.21 5.37 -19.87 -0.11 -5.32 16 19 C 0.32 6.99 5.45 71.24 0.39 7.37 16 20 F -0.21 -5.34 17.26 44.97 0.78 -4.56 16 21 F -0.21 -5.09 17.26 44.97 0.78 -4.32 16 22 C -0.09 -2.53 9.60 22.27 0.21 -2.32 16 23 C -0.12 -3.74 9.67 22.27 0.22 -3.53 16 24 H 0.09 2.17 8.14 -2.39 -0.02 2.15 16 25 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 26 H 0.02 0.72 8.14 -2.39 -0.02 0.70 16 27 H 0.07 1.81 8.14 -2.39 -0.02 1.79 16 28 H 0.03 1.02 8.14 -2.39 -0.02 1.00 16 29 H 0.07 2.28 8.02 -2.38 -0.02 2.26 16 30 H 0.06 2.33 8.08 -2.38 -0.02 2.31 16 31 H 0.26 14.99 8.31 -92.71 -0.77 14.22 16 32 H 0.07 2.58 7.43 -2.39 -0.02 2.56 16 33 H 0.04 1.76 4.85 -2.39 -0.01 1.75 16 34 H 0.10 4.53 8.06 -2.91 -0.02 4.51 16 35 H 0.15 3.47 7.95 -2.91 -0.02 3.44 16 36 H 0.15 2.21 7.88 -2.39 -0.02 2.19 16 37 H 0.14 3.31 8.06 -2.91 -0.02 3.28 16 38 H 0.14 3.75 8.06 -2.91 -0.02 3.73 16 Total: -1.00 -64.92 329.38 6.59 -58.33 By element: Atomic # 1 Polarization: 9.38 SS G_CDS: 0.93 Total: 10.31 kcal Atomic # 6 Polarization: -12.35 SS G_CDS: 4.84 Total: -7.52 kcal Atomic # 7 Polarization: -81.68 SS G_CDS: -1.06 Total: -82.74 kcal Atomic # 8 Polarization: -14.08 SS G_CDS: -1.49 Total: -15.57 kcal Atomic # 9 Polarization: -10.43 SS G_CDS: 1.55 Total: -8.88 kcal Atomic # 14 Polarization: 44.25 SS G_CDS: 1.81 Total: 46.06 kcal Total: -64.92 6.59 -58.33 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000453595806.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.960 kcal (2) G-P(sol) polarization free energy of solvation -64.921 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.881 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.589 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.332 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.291 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds