Wall clock time and date at job start Tue Mar 31 2020 05:48:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52991 * 109.47328 * 2 1 4 4 C 1.52994 * 109.46809 * 239.99584 * 2 1 3 5 5 O 1.45199 * 109.46553 * 120.00033 * 2 1 3 6 6 C 1.34639 * 117.00525 * 59.99786 * 5 2 1 7 7 O 1.21507 * 119.99712 * 359.97438 * 6 5 2 8 8 N 1.34772 * 119.99953 * 179.97438 * 6 5 2 9 9 C 1.47427 * 125.65265 * 359.96053 * 8 6 5 10 10 C 1.54902 * 104.83431 * 204.16163 * 9 8 6 11 11 C 1.55159 * 101.58474 * 322.99119 * 10 9 8 12 12 C 1.47027 * 125.64512 * 179.97438 * 8 6 5 13 13 H 1.09001 * 109.88293 * 59.33670 * 12 8 6 14 14 C 1.50703 * 109.88398 * 298.32284 * 12 8 6 15 15 O 1.21213 * 119.99683 * 341.45329 * 14 12 8 16 16 O 1.34304 * 119.99842 * 161.45589 * 14 12 8 17 17 C 1.34921 * 117.00180 * 180.02562 * 16 14 12 18 18 H 1.08004 * 119.99263 * 359.97438 * 17 16 14 19 19 C 1.38745 * 120.00380 * 179.97438 * 17 16 14 20 20 N 1.31449 * 120.00198 * 179.97438 * 19 17 16 21 21 Si 1.86803 * 119.99963 * 359.97438 * 19 17 16 22 22 H 1.48498 * 109.47174 * 270.00262 * 21 19 17 23 23 H 1.48494 * 109.46800 * 30.00310 * 21 19 17 24 24 H 1.48504 * 109.46913 * 150.00012 * 21 19 17 25 25 H 1.09009 * 109.47182 * 300.00472 * 1 2 3 26 26 H 1.09007 * 109.47198 * 60.00000 * 1 2 3 27 27 H 1.08996 * 109.47758 * 180.02562 * 1 2 3 28 28 H 1.09005 * 109.47105 * 179.97438 * 3 2 1 29 29 H 1.09003 * 109.46973 * 299.99617 * 3 2 1 30 30 H 1.08996 * 109.47592 * 59.99726 * 3 2 1 31 31 H 1.09007 * 109.47338 * 300.00187 * 4 2 1 32 32 H 1.09003 * 109.47327 * 60.00484 * 4 2 1 33 33 H 1.09000 * 109.47169 * 180.02562 * 4 2 1 34 34 H 1.09001 * 110.36561 * 323.00163 * 9 8 6 35 35 H 1.09002 * 110.36274 * 85.32053 * 9 8 6 36 36 H 1.09000 * 111.00835 * 81.06089 * 10 9 8 37 37 H 1.08996 * 111.00995 * 204.91444 * 10 9 8 38 38 H 1.09003 * 110.71576 * 277.14073 * 11 10 9 39 39 H 1.08996 * 110.72545 * 153.86277 * 11 10 9 40 40 H 0.97001 * 119.99860 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0399 -0.7213 -1.2492 5 8 2.0139 -0.6845 1.1856 6 6 1.6521 -1.9723 1.3384 7 8 0.9507 -2.5094 0.5042 8 7 2.0678 -2.6656 2.4168 9 6 2.9186 -2.1406 3.5003 10 6 3.6007 -3.3906 4.1100 11 6 2.4608 -4.4399 4.0256 12 6 1.7481 -4.0710 2.7073 13 1 2.1071 -4.7077 1.8987 14 6 0.2586 -4.2356 2.8663 15 8 -0.4380 -3.2682 3.0860 16 8 -0.2970 -5.4540 2.7644 17 6 -1.6354 -5.5317 2.9164 18 1 -2.2094 -4.6377 3.1110 19 6 -2.2742 -6.7597 2.8228 20 7 -3.5781 -6.8354 2.9714 21 14 -1.2814 -8.3057 2.4856 22 1 -1.1863 -8.5230 1.0197 23 1 0.0823 -8.1516 3.0527 24 1 -1.9510 -9.4714 3.1165 25 1 -0.3634 0.5139 0.8900 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3634 -1.0276 0.0005 28 1 3.1301 1.4424 0.0005 29 1 1.6768 1.9562 -0.8900 30 1 1.6768 1.9563 0.8899 31 1 1.6765 -1.7490 -1.2491 32 1 1.6767 -0.2075 -2.1392 33 1 3.1299 -0.7218 -1.2490 34 1 3.6674 -1.4583 3.0979 35 1 2.3093 -1.6368 4.2507 36 1 4.4592 -3.6977 3.5128 37 1 3.8909 -3.2115 5.1453 38 1 1.7812 -4.3399 4.8720 39 1 2.8687 -5.4493 3.9743 40 1 -4.0247 -7.6939 2.9056 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000490615689.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:48:39 Heat of formation + Delta-G solvation = -150.815050 kcal Electronic energy + Delta-G solvation = -24024.216970 eV Core-core repulsion = 20419.146694 eV Total energy + Delta-G solvation = -3605.070276 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 285.145 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -40.73473 -39.45415 -37.98647 -36.25037 -35.10256 -33.95865 -32.24775 -31.41041 -29.67074 -27.41371 -27.27047 -25.56918 -24.25247 -21.96749 -21.59302 -19.99355 -18.90948 -17.96972 -17.62207 -17.27539 -16.42358 -15.79279 -15.37878 -15.03571 -14.76715 -14.34548 -14.21435 -13.81498 -13.51796 -13.22173 -13.07835 -12.59429 -12.49964 -12.44089 -12.23872 -12.01690 -11.85154 -11.76818 -11.63255 -11.32832 -11.28732 -11.17621 -11.08501 -10.88019 -10.42472 -10.31284 -10.22472 -9.78547 -9.64667 -9.28662 -8.61753 -8.49107 -6.30501 -4.05479 2.15143 3.11911 3.18308 3.28275 3.38614 3.43259 3.90387 4.24265 4.30450 4.51415 4.62420 4.75988 4.79258 4.94240 4.95713 5.17692 5.26986 5.42505 5.44709 5.53641 5.58437 5.63306 5.68210 5.71104 5.77968 5.84195 5.89100 5.93243 5.98809 6.07025 6.22001 6.35278 6.48786 6.53654 6.64179 7.64788 7.79607 8.10484 8.58809 8.70286 9.07924 9.74216 10.78317 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.019240 B = 0.005328 C = 0.004591 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1454.935416 B = 5254.188262 C = 6097.150182 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.136 3.864 3 C -0.138 4.138 4 C -0.183 4.183 5 O -0.363 6.363 6 C 0.674 3.326 7 O -0.551 6.551 8 N -0.587 5.587 9 C 0.106 3.894 10 C -0.131 4.131 11 C -0.119 4.119 12 C 0.172 3.828 13 H 0.103 0.897 14 C 0.405 3.595 15 O -0.526 6.526 16 O -0.250 6.250 17 C -0.376 4.376 18 H 0.107 0.893 19 C 0.065 3.935 20 N -0.877 5.877 21 Si 0.905 3.095 22 H -0.273 1.273 23 H -0.260 1.260 24 H -0.282 1.282 25 H 0.060 0.940 26 H 0.067 0.933 27 H 0.092 0.908 28 H 0.064 0.936 29 H 0.078 0.922 30 H 0.066 0.934 31 H 0.089 0.911 32 H 0.068 0.932 33 H 0.057 0.943 34 H 0.082 0.918 35 H 0.072 0.928 36 H 0.080 0.920 37 H 0.089 0.911 38 H 0.087 0.913 39 H 0.098 0.902 40 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.470 10.707 -2.022 20.590 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C 0.099 3.901 3 C -0.195 4.195 4 C -0.240 4.240 5 O -0.278 6.278 6 C 0.429 3.571 7 O -0.438 6.438 8 N -0.328 5.328 9 C -0.017 4.017 10 C -0.169 4.169 11 C -0.157 4.157 12 C 0.067 3.933 13 H 0.121 0.879 14 C 0.249 3.751 15 O -0.419 6.419 16 O -0.159 6.159 17 C -0.452 4.452 18 H 0.125 0.875 19 C -0.138 4.138 20 N -0.517 5.517 21 Si 0.730 3.270 22 H -0.199 1.199 23 H -0.184 1.184 24 H -0.208 1.208 25 H 0.079 0.921 26 H 0.086 0.914 27 H 0.110 0.890 28 H 0.083 0.917 29 H 0.097 0.903 30 H 0.085 0.915 31 H 0.108 0.892 32 H 0.087 0.913 33 H 0.076 0.924 34 H 0.100 0.900 35 H 0.090 0.910 36 H 0.099 0.901 37 H 0.108 0.892 38 H 0.105 0.895 39 H 0.116 0.884 40 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 16.820 10.768 -2.361 20.110 hybrid contribution -0.038 -0.629 -0.224 0.669 sum 16.782 10.138 -2.584 19.776 Atomic orbital electron populations 1.22516 0.93763 1.05703 1.02178 1.22035 0.94644 0.91257 0.82136 1.21833 1.01877 0.92764 1.03012 1.22517 1.01165 1.03827 0.96492 1.86250 1.71710 1.23481 1.46387 1.17319 0.78239 0.80293 0.81238 1.90949 1.39692 1.70178 1.42975 1.46732 1.52892 1.11640 1.21575 1.22337 0.93245 0.96684 0.89429 1.22812 0.97619 0.94418 1.02015 1.22635 0.97174 1.00405 0.95450 1.20842 0.90985 0.81537 0.99916 0.87887 1.22993 0.90296 0.82701 0.79122 1.90597 1.63385 1.40348 1.47582 1.83494 1.25804 1.30469 1.76098 1.20612 0.77423 0.97521 1.49621 0.87513 1.24525 0.95241 0.98211 0.95822 1.69615 1.07657 1.26736 1.47684 0.86226 0.80680 0.81003 0.79079 1.19873 1.18365 1.20819 0.92126 0.91414 0.88957 0.91700 0.90284 0.91527 0.89241 0.91279 0.92402 0.89961 0.90999 0.90139 0.89219 0.89453 0.88392 0.91134 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.79 8.37 37.16 0.31 -2.48 16 2 C 0.14 1.87 1.13 -90.63 -0.10 1.76 16 3 C -0.14 -1.35 8.85 37.15 0.33 -1.02 16 4 C -0.18 -2.35 8.37 37.15 0.31 -2.04 16 5 O -0.36 -5.88 9.42 -40.32 -0.38 -6.26 16 6 C 0.67 12.88 7.33 54.05 0.40 13.27 16 7 O -0.55 -12.24 11.69 -19.28 -0.23 -12.47 16 8 N -0.59 -10.15 2.75 -170.06 -0.47 -10.62 16 9 C 0.11 1.31 6.92 -2.53 -0.02 1.29 16 10 C -0.13 -1.26 7.08 -24.59 -0.17 -1.44 16 11 C -0.12 -1.57 6.47 -24.89 -0.16 -1.73 16 12 C 0.17 3.13 3.37 -68.10 -0.23 2.90 16 13 H 0.10 1.77 8.14 -51.93 -0.42 1.35 16 14 C 0.41 10.10 6.35 36.01 0.23 10.33 16 15 O -0.53 -14.86 15.38 -19.05 -0.29 -15.15 16 16 O -0.25 -6.89 8.58 -20.69 -0.18 -7.07 16 17 C -0.38 -11.63 10.10 30.92 0.31 -11.32 16 18 H 0.11 3.67 7.09 -52.48 -0.37 3.29 16 19 C 0.07 1.92 5.49 -17.53 -0.10 1.83 16 20 N -0.88 -26.75 13.96 55.48 0.77 -25.97 16 21 Si 0.90 21.91 28.62 -169.99 -4.86 17.05 16 22 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 23 H -0.26 -6.02 7.11 56.52 0.40 -5.62 16 24 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 25 H 0.06 0.92 8.14 -51.92 -0.42 0.49 16 26 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 27 H 0.09 1.78 5.88 -51.93 -0.31 1.48 16 28 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 29 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 30 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 31 H 0.09 1.43 5.88 -51.92 -0.31 1.13 16 32 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 33 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 34 H 0.08 0.86 8.04 -51.93 -0.42 0.44 16 35 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 36 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 37 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 38 H 0.09 1.26 7.84 -51.93 -0.41 0.85 16 39 H 0.10 1.09 8.14 -51.93 -0.42 0.67 16 40 H 0.28 7.74 8.31 -40.82 -0.34 7.40 16 LS Contribution 332.30 15.07 5.01 5.01 Total: -1.00 -36.90 332.30 -5.53 -42.43 By element: Atomic # 1 Polarization: 7.70 SS G_CDS: -6.02 Total: 1.69 kcal Atomic # 6 Polarization: 10.25 SS G_CDS: 1.11 Total: 11.36 kcal Atomic # 7 Polarization: -36.90 SS G_CDS: 0.31 Total: -36.59 kcal Atomic # 8 Polarization: -39.87 SS G_CDS: -1.08 Total: -40.94 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -4.86 Total: 17.05 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -36.90 -5.53 -42.43 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000490615689.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -108.385 kcal (2) G-P(sol) polarization free energy of solvation -36.896 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -145.281 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.534 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.430 kcal (6) G-S(sol) free energy of system = (1) + (5) -150.815 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds