Wall clock time and date at job start Tue Mar 31 2020 05:48:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52991 * 109.47328 * 2 1 4 4 C 1.52994 * 109.46809 * 239.99584 * 2 1 3 5 5 O 1.45199 * 109.46553 * 120.00033 * 2 1 3 6 6 C 1.34639 * 117.00525 * 59.99786 * 5 2 1 7 7 O 1.21507 * 119.99712 * 359.97438 * 6 5 2 8 8 N 1.34772 * 119.99953 * 179.97438 * 6 5 2 9 9 C 1.47427 * 125.65265 * 359.96053 * 8 6 5 10 10 C 1.54902 * 104.83431 * 204.16163 * 9 8 6 11 11 C 1.55159 * 101.58474 * 322.99119 * 10 9 8 12 12 C 1.47027 * 125.64512 * 179.97438 * 8 6 5 13 13 H 1.09001 * 109.88293 * 59.33670 * 12 8 6 14 14 C 1.50703 * 109.88398 * 298.32284 * 12 8 6 15 15 O 1.21213 * 119.99683 * 341.45329 * 14 12 8 16 16 O 1.34304 * 119.99842 * 161.45589 * 14 12 8 17 17 C 1.34921 * 117.00180 * 180.02562 * 16 14 12 18 18 H 1.08004 * 119.99263 * 359.97438 * 17 16 14 19 19 C 1.38745 * 120.00380 * 179.97438 * 17 16 14 20 20 N 1.31449 * 120.00198 * 179.97438 * 19 17 16 21 21 Si 1.86803 * 119.99963 * 359.97438 * 19 17 16 22 22 H 1.48498 * 109.47174 * 270.00262 * 21 19 17 23 23 H 1.48494 * 109.46800 * 30.00310 * 21 19 17 24 24 H 1.48504 * 109.46913 * 150.00012 * 21 19 17 25 25 H 1.09009 * 109.47182 * 300.00472 * 1 2 3 26 26 H 1.09007 * 109.47198 * 60.00000 * 1 2 3 27 27 H 1.08996 * 109.47758 * 180.02562 * 1 2 3 28 28 H 1.09005 * 109.47105 * 179.97438 * 3 2 1 29 29 H 1.09003 * 109.46973 * 299.99617 * 3 2 1 30 30 H 1.08996 * 109.47592 * 59.99726 * 3 2 1 31 31 H 1.09007 * 109.47338 * 300.00187 * 4 2 1 32 32 H 1.09003 * 109.47327 * 60.00484 * 4 2 1 33 33 H 1.09000 * 109.47169 * 180.02562 * 4 2 1 34 34 H 1.09001 * 110.36561 * 323.00163 * 9 8 6 35 35 H 1.09002 * 110.36274 * 85.32053 * 9 8 6 36 36 H 1.09000 * 111.00835 * 81.06089 * 10 9 8 37 37 H 1.08996 * 111.00995 * 204.91444 * 10 9 8 38 38 H 1.09003 * 110.71576 * 277.14073 * 11 10 9 39 39 H 1.08996 * 110.72545 * 153.86277 * 11 10 9 40 40 H 0.97001 * 119.99860 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0399 -0.7213 -1.2492 5 8 2.0139 -0.6845 1.1856 6 6 1.6521 -1.9723 1.3384 7 8 0.9507 -2.5094 0.5042 8 7 2.0678 -2.6656 2.4168 9 6 2.9186 -2.1406 3.5003 10 6 3.6007 -3.3906 4.1100 11 6 2.4608 -4.4399 4.0256 12 6 1.7481 -4.0710 2.7073 13 1 2.1071 -4.7077 1.8987 14 6 0.2586 -4.2356 2.8663 15 8 -0.4380 -3.2682 3.0860 16 8 -0.2970 -5.4540 2.7644 17 6 -1.6354 -5.5317 2.9164 18 1 -2.2094 -4.6377 3.1110 19 6 -2.2742 -6.7597 2.8228 20 7 -3.5781 -6.8354 2.9714 21 14 -1.2814 -8.3057 2.4856 22 1 -1.1863 -8.5230 1.0197 23 1 0.0823 -8.1516 3.0527 24 1 -1.9510 -9.4714 3.1165 25 1 -0.3634 0.5139 0.8900 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3634 -1.0276 0.0005 28 1 3.1301 1.4424 0.0005 29 1 1.6768 1.9562 -0.8900 30 1 1.6768 1.9563 0.8899 31 1 1.6765 -1.7490 -1.2491 32 1 1.6767 -0.2075 -2.1392 33 1 3.1299 -0.7218 -1.2490 34 1 3.6674 -1.4583 3.0979 35 1 2.3093 -1.6368 4.2507 36 1 4.4592 -3.6977 3.5128 37 1 3.8909 -3.2115 5.1453 38 1 1.7812 -4.3399 4.8720 39 1 2.8687 -5.4493 3.9743 40 1 -4.0247 -7.6939 2.9056 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000490615689.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:48:39 Heat of formation + Delta-G solvation = -176.701305 kcal Electronic energy + Delta-G solvation = -24025.339482 eV Core-core repulsion = 20419.146694 eV Total energy + Delta-G solvation = -3606.192788 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 285.145 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -42.15975 -41.20335 -39.48802 -37.62199 -37.23359 -35.14955 -34.54132 -32.58554 -31.01890 -28.42990 -28.31036 -27.67190 -25.58539 -23.54247 -22.64887 -21.44373 -20.40385 -20.14920 -19.20333 -18.84669 -17.73851 -17.40473 -16.88776 -16.57142 -16.51499 -16.00707 -15.52937 -15.34235 -14.75106 -14.56909 -14.35236 -14.18025 -14.15049 -13.58934 -13.38535 -13.35987 -13.14427 -12.94277 -12.89127 -12.81833 -12.52581 -12.40887 -12.32515 -12.28632 -12.19269 -11.88491 -11.81029 -11.44383 -11.18549 -11.17592 -10.86747 -9.96136 -8.57922 -6.45578 0.83784 1.26615 1.31443 1.49289 1.55599 1.67403 2.25000 2.34657 2.85153 2.90864 3.45696 3.53573 3.71902 3.75336 3.90597 3.95953 4.11865 4.26385 4.44425 4.46965 4.55563 4.65393 4.67317 4.71361 4.78906 4.80795 4.84608 4.85344 5.04735 5.08236 5.16130 5.24146 5.28406 5.32558 5.40670 5.42324 5.85137 6.29150 6.48877 6.77955 7.18762 7.52252 8.55640 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.019240 B = 0.005328 C = 0.004591 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1454.935416 B = 5254.188262 C = 6097.150182 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.123 3.877 3 C -0.129 4.129 4 C -0.177 4.177 5 O -0.358 6.358 6 C 0.664 3.336 7 O -0.593 6.593 8 N -0.592 5.592 9 C 0.094 3.906 10 C -0.107 4.107 11 C -0.115 4.115 12 C 0.172 3.828 13 H 0.117 0.883 14 C 0.401 3.599 15 O -0.570 6.570 16 O -0.253 6.253 17 C -0.408 4.408 18 H 0.047 0.953 19 C 0.015 3.985 20 N -0.919 5.919 21 Si 0.986 3.014 22 H -0.265 1.265 23 H -0.239 1.239 24 H -0.260 1.260 25 H 0.052 0.948 26 H 0.097 0.903 27 H 0.042 0.958 28 H 0.081 0.919 29 H 0.105 0.895 30 H 0.066 0.934 31 H 0.051 0.949 32 H 0.093 0.907 33 H 0.074 0.926 34 H 0.108 0.892 35 H 0.061 0.939 36 H 0.108 0.892 37 H 0.123 0.877 38 H 0.070 0.930 39 H 0.129 0.871 40 H 0.290 0.710 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.519 10.324 -2.084 23.958 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C 0.087 3.913 3 C -0.185 4.185 4 C -0.234 4.234 5 O -0.272 6.272 6 C 0.419 3.581 7 O -0.484 6.484 8 N -0.333 5.333 9 C -0.026 4.026 10 C -0.145 4.145 11 C -0.153 4.153 12 C 0.067 3.933 13 H 0.134 0.866 14 C 0.247 3.753 15 O -0.465 6.465 16 O -0.162 6.162 17 C -0.484 4.484 18 H 0.065 0.935 19 C -0.185 4.185 20 N -0.559 5.559 21 Si 0.804 3.196 22 H -0.190 1.190 23 H -0.162 1.162 24 H -0.185 1.185 25 H 0.071 0.929 26 H 0.115 0.885 27 H 0.061 0.939 28 H 0.100 0.900 29 H 0.123 0.877 30 H 0.085 0.915 31 H 0.070 0.930 32 H 0.112 0.888 33 H 0.093 0.907 34 H 0.126 0.874 35 H 0.080 0.920 36 H 0.127 0.873 37 H 0.141 0.859 38 H 0.089 0.911 39 H 0.147 0.853 40 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 20.889 10.431 -2.388 23.470 hybrid contribution -1.396 -0.316 -0.222 1.449 sum 19.492 10.115 -2.610 22.115 Atomic orbital electron populations 1.22480 0.95567 1.02647 1.03245 1.22495 0.93531 0.93488 0.81794 1.21854 1.02889 0.89479 1.04327 1.22451 1.02128 1.01719 0.97088 1.86269 1.71390 1.21926 1.47644 1.17703 0.77882 0.81081 0.81397 1.90934 1.41469 1.71211 1.44753 1.47053 1.52762 1.11487 1.21993 1.22723 0.93106 0.98713 0.88090 1.22866 0.96461 0.90821 1.04327 1.22773 0.97649 1.03386 0.91468 1.21234 0.85781 0.82867 1.03388 0.86565 1.24722 0.93174 0.81257 0.76167 1.90568 1.65345 1.41496 1.49100 1.83502 1.23717 1.31933 1.77042 1.20243 0.78992 0.96459 1.52727 0.93512 1.25657 0.96561 1.02000 0.94283 1.69718 1.09763 1.28639 1.47802 0.85056 0.79626 0.75436 0.79437 1.19024 1.16198 1.18453 0.92938 0.88459 0.93926 0.90038 0.87667 0.91527 0.93017 0.88798 0.90681 0.87379 0.92024 0.87305 0.85860 0.91149 0.85268 0.90003 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -5.72 8.37 71.98 0.60 -5.12 16 2 C 0.12 3.30 1.13 -10.80 -0.01 3.29 16 3 C -0.13 -2.17 8.85 71.98 0.64 -1.53 16 4 C -0.18 -4.40 8.37 71.98 0.60 -3.80 16 5 O -0.36 -11.53 9.42 -55.49 -0.52 -12.05 16 6 C 0.66 26.05 7.33 129.79 0.95 27.00 16 7 O -0.59 -28.01 11.69 19.82 0.23 -27.78 16 8 N -0.59 -20.31 2.75 -922.36 -2.54 -22.85 16 9 C 0.09 2.13 6.92 86.85 0.60 2.73 16 10 C -0.11 -1.59 7.08 31.98 0.23 -1.37 16 11 C -0.11 -2.74 6.47 31.79 0.21 -2.53 16 12 C 0.17 6.20 3.37 44.60 0.15 6.35 16 13 H 0.12 3.88 8.14 -2.39 -0.02 3.86 16 14 C 0.40 20.92 6.35 71.24 0.45 21.37 16 15 O -0.57 -34.65 15.38 20.76 0.32 -34.33 16 16 O -0.25 -14.46 8.58 14.93 0.13 -14.33 16 17 C -0.41 -26.82 10.10 67.94 0.69 -26.13 16 18 H 0.05 3.54 7.09 -2.91 -0.02 3.52 16 19 C 0.01 0.88 5.49 84.87 0.47 1.35 16 20 N -0.92 -58.05 13.96 21.62 0.30 -57.74 16 21 Si 0.99 44.95 28.62 68.60 1.96 46.91 16 22 H -0.27 -11.73 7.11 99.48 0.71 -11.02 16 23 H -0.24 -10.04 7.11 99.48 0.71 -9.34 16 24 H -0.26 -10.86 7.11 99.48 0.71 -10.15 16 25 H 0.05 1.67 8.14 -2.38 -0.02 1.65 16 26 H 0.10 2.36 8.14 -2.38 -0.02 2.34 16 27 H 0.04 1.78 5.88 -2.39 -0.01 1.76 16 28 H 0.08 1.14 8.14 -2.38 -0.02 1.12 16 29 H 0.10 1.25 8.14 -2.39 -0.02 1.24 16 30 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 31 H 0.05 1.71 5.88 -2.38 -0.01 1.70 16 32 H 0.09 1.81 8.14 -2.39 -0.02 1.79 16 33 H 0.07 1.58 8.14 -2.39 -0.02 1.56 16 34 H 0.11 1.89 8.04 -2.39 -0.02 1.88 16 35 H 0.06 1.51 8.14 -2.39 -0.02 1.49 16 36 H 0.11 1.11 8.14 -2.39 -0.02 1.09 16 37 H 0.12 1.13 8.14 -2.39 -0.02 1.11 16 38 H 0.07 1.93 7.84 -2.39 -0.02 1.92 16 39 H 0.13 2.32 8.14 -2.39 -0.02 2.30 16 40 H 0.29 16.40 8.31 -92.71 -0.77 15.63 16 Total: -1.00 -90.49 332.30 6.48 -84.01 By element: Atomic # 1 Polarization: 15.53 SS G_CDS: 1.03 Total: 16.56 kcal Atomic # 6 Polarization: 16.03 SS G_CDS: 5.57 Total: 21.60 kcal Atomic # 7 Polarization: -78.35 SS G_CDS: -2.24 Total: -80.59 kcal Atomic # 8 Polarization: -88.65 SS G_CDS: 0.16 Total: -88.49 kcal Atomic # 14 Polarization: 44.95 SS G_CDS: 1.96 Total: 46.91 kcal Total: -90.49 6.48 -84.01 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000490615689.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -92.693 kcal (2) G-P(sol) polarization free energy of solvation -90.491 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -183.184 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.482 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.009 kcal (6) G-S(sol) free energy of system = (1) + (5) -176.701 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds