Wall clock time and date at job start Tue Mar 31 2020 06:06:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.45199 * 109.47099 * 2 1 4 4 C 1.34638 * 116.99873 * 179.97438 * 3 2 1 5 5 O 1.21513 * 120.00066 * 359.97438 * 4 3 2 6 6 N 1.34779 * 119.99768 * 180.02562 * 4 3 2 7 7 C 1.46507 * 119.99726 * 179.97438 * 6 4 3 8 8 C 1.52997 * 109.47103 * 179.97438 * 7 6 4 9 9 C 1.50694 * 109.47270 * 179.97438 * 8 7 6 10 10 O 1.20830 * 120.00166 * 0.02562 * 9 8 7 11 11 O 1.34223 * 120.00174 * 179.97438 * 9 8 7 12 12 C 1.45204 * 117.00262 * 180.02562 * 11 9 8 13 13 C 1.53002 * 109.47296 * 180.02562 * 12 11 9 14 14 C 1.50706 * 115.54723 * 65.10709 * 13 12 11 15 15 H 1.08000 * 119.99762 * 266.11088 * 14 13 12 16 16 C 1.37875 * 119.99835 * 86.11079 * 14 13 12 17 17 N 1.31515 * 120.00131 * 353.70635 * 16 14 13 18 18 Si 1.86799 * 119.99942 * 173.70111 * 16 14 13 19 19 H 1.48501 * 109.47272 * 0.02562 * 18 16 14 20 20 H 1.48503 * 109.47291 * 119.99966 * 18 16 14 21 21 H 1.48495 * 109.47464 * 240.00233 * 18 16 14 22 22 C 1.52995 * 117.49867 * 279.43670 * 13 12 11 23 23 C 1.52998 * 117.49946 * 210.77553 * 13 12 11 24 24 H 1.09004 * 109.47002 * 180.02562 * 1 2 3 25 25 H 1.09004 * 109.47295 * 300.00274 * 1 2 3 26 26 H 1.08999 * 109.47230 * 60.00095 * 1 2 3 27 27 H 1.08997 * 109.46937 * 239.99641 * 2 1 3 28 28 H 1.09009 * 109.46796 * 119.99597 * 2 1 3 29 29 H 0.96997 * 120.00440 * 359.97438 * 6 4 3 30 30 H 1.09000 * 109.46905 * 59.99705 * 7 6 4 31 31 H 1.08997 * 109.47012 * 299.99708 * 7 6 4 32 32 H 1.08998 * 109.46934 * 59.99284 * 8 7 6 33 33 H 1.09007 * 109.46836 * 300.00317 * 8 7 6 34 34 H 1.09005 * 109.46752 * 300.00082 * 12 11 9 35 35 H 1.09007 * 109.46946 * 60.00095 * 12 11 9 36 36 H 0.97003 * 120.00012 * 179.97438 * 17 16 14 37 37 H 1.08997 * 117.50232 * 0.02562 * 22 13 12 38 38 H 1.08998 * 117.49490 * 145.02146 * 22 13 12 39 39 H 1.08996 * 117.50013 * 214.98296 * 23 13 12 40 40 H 1.09004 * 117.49796 * 359.97438 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3488 1.5453 0.0005 5 8 4.0890 0.5817 0.0015 6 7 3.8639 2.7908 0.0011 7 6 5.3163 2.9827 0.0022 8 6 5.6329 4.4796 0.0020 9 6 7.1269 4.6770 0.0038 10 8 7.8630 3.7188 0.0047 11 8 7.6400 5.9173 0.0035 12 6 9.0875 6.0320 0.0047 13 6 9.4820 7.5103 0.0047 14 6 9.0955 8.2861 1.2376 15 1 8.1654 8.8346 1.2609 16 6 9.9293 8.2956 2.3356 17 7 10.9991 7.5310 2.3556 18 14 9.5395 9.3947 3.7948 19 1 8.2895 10.1500 3.5258 20 1 9.3608 8.5597 5.0098 21 1 10.6577 10.3479 4.0094 22 6 9.4503 8.2499 -1.3342 23 6 10.7913 7.8920 -0.6886 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3634 0.5139 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 1.8933 -0.5139 -0.8899 28 1 1.8933 -0.5138 0.8901 29 1 3.2731 3.5601 0.0007 30 1 5.7445 2.5210 -0.8874 31 1 5.7431 2.5208 0.8925 32 1 5.2046 4.9416 0.8914 33 1 5.2061 4.9411 -0.8885 34 1 9.4894 5.5490 0.8955 35 1 9.4910 5.5478 -0.8846 36 1 11.5859 7.5380 3.1280 37 1 9.1481 7.6835 -2.2151 38 1 9.1504 9.2977 -1.3233 39 1 11.3731 8.7045 -0.2533 40 1 11.3719 7.0899 -1.1444 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000491858450.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:06:14 Heat of formation + Delta-G solvation = -152.979408 kcal Electronic energy + Delta-G solvation = -21843.482710 eV Core-core repulsion = 18238.318580 eV Total energy + Delta-G solvation = -3605.164130 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 285.145 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.63736 -39.88335 -37.36408 -36.81479 -35.52985 -35.12698 -32.22199 -31.99333 -30.98192 -27.08509 -25.45266 -24.56917 -23.19383 -21.49207 -21.23321 -20.41711 -19.31094 -18.87155 -17.40348 -17.00412 -16.75478 -16.42947 -16.14396 -15.31884 -14.98522 -14.82070 -14.60119 -14.09465 -13.95730 -13.74174 -13.11144 -13.02437 -12.45032 -12.32867 -12.11671 -11.97729 -11.92490 -11.61600 -11.57272 -11.03351 -10.88835 -10.81521 -10.78857 -10.55917 -10.33050 -10.12298 -9.92224 -9.60013 -9.42617 -8.85836 -8.50840 -8.25291 -6.10566 -4.16145 1.85578 2.63790 2.64614 3.22586 3.25881 3.33892 3.37549 4.01573 4.35988 4.51772 4.61435 4.65976 4.90747 4.96192 5.06615 5.19486 5.21665 5.29799 5.42823 5.49570 5.58685 5.68304 5.75788 5.94107 6.03381 6.17895 6.20390 6.29203 6.48124 6.60672 6.69424 7.00036 7.14879 7.19540 7.32357 7.43292 7.82922 8.12590 8.27662 8.37359 8.86089 9.50078 10.98775 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.025248 B = 0.002760 C = 0.002621 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1108.728927 B =10141.396603 C =10679.350491 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.082 3.918 3 O -0.373 6.373 4 C 0.648 3.352 5 O -0.569 6.569 6 N -0.709 5.709 7 C 0.148 3.852 8 C -0.128 4.128 9 C 0.459 3.541 10 O -0.519 6.519 11 O -0.336 6.336 12 C 0.116 3.884 13 C 0.036 3.964 14 C -0.490 4.490 15 H 0.064 0.936 16 C 0.068 3.932 17 N -0.881 5.881 18 Si 0.893 3.107 19 H -0.271 1.271 20 H -0.284 1.284 21 H -0.283 1.283 22 C -0.205 4.205 23 C -0.144 4.144 24 H 0.081 0.919 25 H 0.067 0.933 26 H 0.066 0.934 27 H 0.070 0.930 28 H 0.071 0.929 29 H 0.408 0.592 30 H 0.082 0.918 31 H 0.084 0.916 32 H 0.114 0.886 33 H 0.111 0.889 34 H 0.077 0.923 35 H 0.040 0.960 36 H 0.261 0.739 37 H 0.066 0.934 38 H 0.081 0.919 39 H 0.088 0.912 40 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.597 -9.124 -5.271 20.511 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.007 3.993 3 O -0.288 6.288 4 C 0.400 3.600 5 O -0.457 6.457 6 N -0.368 5.368 7 C 0.025 3.975 8 C -0.166 4.166 9 C 0.301 3.699 10 O -0.409 6.409 11 O -0.251 6.251 12 C 0.042 3.958 13 C 0.035 3.965 14 C -0.527 4.527 15 H 0.082 0.918 16 C -0.135 4.135 17 N -0.517 5.517 18 Si 0.720 3.280 19 H -0.196 1.196 20 H -0.210 1.210 21 H -0.209 1.209 22 C -0.242 4.242 23 C -0.182 4.182 24 H 0.100 0.900 25 H 0.086 0.914 26 H 0.085 0.915 27 H 0.089 0.911 28 H 0.089 0.911 29 H 0.243 0.757 30 H 0.101 0.899 31 H 0.102 0.898 32 H 0.132 0.868 33 H 0.129 0.871 34 H 0.095 0.905 35 H 0.059 0.941 36 H 0.071 0.929 37 H 0.085 0.915 38 H 0.100 0.900 39 H 0.106 0.894 40 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -16.847 -9.966 -5.149 20.240 hybrid contribution -0.126 0.725 0.869 1.138 sum -16.973 -9.241 -4.281 19.794 Atomic orbital electron populations 1.21834 0.92543 1.03080 1.03563 1.22958 0.94766 0.78646 1.02913 1.86226 1.22088 1.33350 1.87103 1.18019 0.81104 0.84326 0.76521 1.91033 1.59794 1.39671 1.55240 1.44582 1.08286 1.05525 1.78457 1.21102 0.76917 0.94621 1.04825 1.21395 0.91514 0.96940 1.06772 1.23011 0.91213 0.82429 0.73204 1.90669 1.61959 1.42179 1.46113 1.86504 1.28123 1.28552 1.81873 1.22953 0.73347 0.99089 1.00361 1.18796 0.97225 0.89089 0.91385 1.20420 1.05734 1.29874 0.96711 0.91791 1.25030 0.95006 0.95218 0.98291 1.70009 1.14070 1.37512 1.30135 0.86527 0.78452 0.80628 0.82386 1.19581 1.21014 1.20910 1.23012 1.03183 1.00757 0.97281 1.22539 0.90316 1.02212 1.03112 0.89987 0.91433 0.91451 0.91112 0.91087 0.75696 0.89925 0.89806 0.86825 0.87064 0.90487 0.94149 0.92912 0.91535 0.90045 0.89381 0.91604 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.81 10.29 37.16 0.38 -0.43 16 2 C 0.08 0.68 6.19 37.16 0.23 0.91 16 3 O -0.37 -3.93 10.27 -40.32 -0.41 -4.34 16 4 C 0.65 8.19 8.75 54.06 0.47 8.66 16 5 O -0.57 -9.22 16.13 -19.28 -0.31 -9.53 16 6 N -0.71 -7.26 5.56 -65.28 -0.36 -7.62 16 7 C 0.15 1.77 4.96 -4.04 -0.02 1.75 16 8 C -0.13 -1.46 5.92 -27.89 -0.17 -1.62 16 9 C 0.46 8.04 7.96 36.00 0.29 8.33 16 10 O -0.52 -10.57 15.73 -18.75 -0.30 -10.86 16 11 O -0.34 -6.92 10.16 -39.24 -0.40 -7.32 16 12 C 0.12 2.67 5.29 37.16 0.20 2.87 16 13 C 0.04 0.86 1.62 -155.66 -0.25 0.61 16 14 C -0.49 -13.06 8.78 -34.44 -0.30 -13.37 16 15 H 0.06 1.71 7.82 -52.49 -0.41 1.30 16 16 C 0.07 1.82 5.38 -17.82 -0.10 1.73 16 17 N -0.88 -24.56 12.88 55.43 0.71 -23.85 16 18 Si 0.89 20.72 29.54 -169.99 -5.02 15.70 16 19 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 20 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 21 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 22 C -0.21 -4.35 9.96 -26.70 -0.27 -4.62 16 23 C -0.14 -3.29 9.37 -26.69 -0.25 -3.54 16 24 H 0.08 0.29 8.14 -51.93 -0.42 -0.13 16 25 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 26 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 27 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 28 H 0.07 0.60 8.14 -51.92 -0.42 0.17 16 29 H 0.41 2.91 8.58 -40.82 -0.35 2.56 16 30 H 0.08 1.09 8.10 -51.93 -0.42 0.67 16 31 H 0.08 1.15 8.10 -51.93 -0.42 0.73 16 32 H 0.11 1.10 8.14 -51.93 -0.42 0.67 16 33 H 0.11 0.98 8.14 -51.92 -0.42 0.56 16 34 H 0.08 1.98 8.13 -51.93 -0.42 1.55 16 35 H 0.04 0.88 8.09 -51.93 -0.42 0.46 16 36 H 0.26 6.96 8.31 -40.82 -0.34 6.62 16 37 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 38 H 0.08 1.69 8.14 -51.93 -0.42 1.27 16 39 H 0.09 2.12 8.14 -51.93 -0.42 1.70 16 40 H 0.07 1.40 8.14 -51.93 -0.42 0.98 16 LS Contribution 352.76 15.07 5.32 5.32 Total: -1.00 -32.60 352.76 -6.79 -39.38 By element: Atomic # 1 Polarization: 8.08 SS G_CDS: -6.23 Total: 1.86 kcal Atomic # 6 Polarization: 1.06 SS G_CDS: 0.22 Total: 1.27 kcal Atomic # 7 Polarization: -31.82 SS G_CDS: 0.35 Total: -31.47 kcal Atomic # 8 Polarization: -30.64 SS G_CDS: -1.42 Total: -32.06 kcal Atomic # 14 Polarization: 20.72 SS G_CDS: -5.02 Total: 15.70 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -32.60 -6.79 -39.38 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491858450.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -113.598 kcal (2) G-P(sol) polarization free energy of solvation -32.595 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -146.193 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.786 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.381 kcal (6) G-S(sol) free energy of system = (1) + (5) -152.979 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds