Wall clock time and date at job start Tue Mar 31 2020 06:06:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.45199 * 109.47099 * 2 1 4 4 C 1.34638 * 116.99873 * 179.97438 * 3 2 1 5 5 O 1.21513 * 120.00066 * 359.97438 * 4 3 2 6 6 N 1.34779 * 119.99768 * 180.02562 * 4 3 2 7 7 C 1.46507 * 119.99726 * 179.97438 * 6 4 3 8 8 C 1.52997 * 109.47103 * 179.97438 * 7 6 4 9 9 C 1.50694 * 109.47270 * 179.97438 * 8 7 6 10 10 O 1.20830 * 120.00166 * 0.02562 * 9 8 7 11 11 O 1.34223 * 120.00174 * 179.97438 * 9 8 7 12 12 C 1.45204 * 117.00262 * 180.02562 * 11 9 8 13 13 C 1.53002 * 109.47296 * 180.02562 * 12 11 9 14 14 C 1.50706 * 115.54723 * 65.10709 * 13 12 11 15 15 H 1.08000 * 119.99762 * 266.11088 * 14 13 12 16 16 C 1.37875 * 119.99835 * 86.11079 * 14 13 12 17 17 N 1.31515 * 120.00131 * 353.70635 * 16 14 13 18 18 Si 1.86799 * 119.99942 * 173.70111 * 16 14 13 19 19 H 1.48501 * 109.47272 * 0.02562 * 18 16 14 20 20 H 1.48503 * 109.47291 * 119.99966 * 18 16 14 21 21 H 1.48495 * 109.47464 * 240.00233 * 18 16 14 22 22 C 1.52995 * 117.49867 * 279.43670 * 13 12 11 23 23 C 1.52998 * 117.49946 * 210.77553 * 13 12 11 24 24 H 1.09004 * 109.47002 * 180.02562 * 1 2 3 25 25 H 1.09004 * 109.47295 * 300.00274 * 1 2 3 26 26 H 1.08999 * 109.47230 * 60.00095 * 1 2 3 27 27 H 1.08997 * 109.46937 * 239.99641 * 2 1 3 28 28 H 1.09009 * 109.46796 * 119.99597 * 2 1 3 29 29 H 0.96997 * 120.00440 * 359.97438 * 6 4 3 30 30 H 1.09000 * 109.46905 * 59.99705 * 7 6 4 31 31 H 1.08997 * 109.47012 * 299.99708 * 7 6 4 32 32 H 1.08998 * 109.46934 * 59.99284 * 8 7 6 33 33 H 1.09007 * 109.46836 * 300.00317 * 8 7 6 34 34 H 1.09005 * 109.46752 * 300.00082 * 12 11 9 35 35 H 1.09007 * 109.46946 * 60.00095 * 12 11 9 36 36 H 0.97003 * 120.00012 * 179.97438 * 17 16 14 37 37 H 1.08997 * 117.50232 * 0.02562 * 22 13 12 38 38 H 1.08998 * 117.49490 * 145.02146 * 22 13 12 39 39 H 1.08996 * 117.50013 * 214.98296 * 23 13 12 40 40 H 1.09004 * 117.49796 * 359.97438 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3488 1.5453 0.0005 5 8 4.0890 0.5817 0.0015 6 7 3.8639 2.7908 0.0011 7 6 5.3163 2.9827 0.0022 8 6 5.6329 4.4796 0.0020 9 6 7.1269 4.6770 0.0038 10 8 7.8630 3.7188 0.0047 11 8 7.6400 5.9173 0.0035 12 6 9.0875 6.0320 0.0047 13 6 9.4820 7.5103 0.0047 14 6 9.0955 8.2861 1.2376 15 1 8.1654 8.8346 1.2609 16 6 9.9293 8.2956 2.3356 17 7 10.9991 7.5310 2.3556 18 14 9.5395 9.3947 3.7948 19 1 8.2895 10.1500 3.5258 20 1 9.3608 8.5597 5.0098 21 1 10.6577 10.3479 4.0094 22 6 9.4503 8.2499 -1.3342 23 6 10.7913 7.8920 -0.6886 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3634 0.5139 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 1.8933 -0.5139 -0.8899 28 1 1.8933 -0.5138 0.8901 29 1 3.2731 3.5601 0.0007 30 1 5.7445 2.5210 -0.8874 31 1 5.7431 2.5208 0.8925 32 1 5.2046 4.9416 0.8914 33 1 5.2061 4.9411 -0.8885 34 1 9.4894 5.5490 0.8955 35 1 9.4910 5.5478 -0.8846 36 1 11.5859 7.5380 3.1280 37 1 9.1481 7.6835 -2.2151 38 1 9.1504 9.2977 -1.3233 39 1 11.3731 8.7045 -0.2533 40 1 11.3719 7.0899 -1.1444 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000491858450.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:06:13 Heat of formation + Delta-G solvation = -174.255401 kcal Electronic energy + Delta-G solvation = -21844.405306 eV Core-core repulsion = 18238.318580 eV Total energy + Delta-G solvation = -3606.086726 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 285.145 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.65363 -41.31290 -38.72295 -38.08052 -37.02478 -36.34448 -34.01492 -32.96790 -31.87369 -28.77766 -27.37230 -25.70740 -23.93049 -22.97502 -22.41511 -21.74017 -21.18376 -19.87380 -18.72467 -18.33578 -17.92517 -17.73145 -17.50270 -16.87794 -16.56989 -15.99876 -15.85623 -15.49291 -15.02906 -14.78483 -14.69083 -13.93763 -13.79229 -13.58197 -13.53379 -13.05058 -13.00265 -12.90906 -12.80709 -12.56364 -12.51885 -12.35992 -12.07774 -11.90357 -11.69981 -11.66058 -11.54343 -11.37092 -10.76348 -10.49026 -10.38199 -10.07780 -8.13536 -6.24682 0.94282 1.24284 1.41351 1.44463 1.55298 1.65246 1.90241 2.42899 3.14856 3.17783 3.45759 3.50663 3.91340 3.97358 4.03922 4.11140 4.16027 4.36172 4.39264 4.42097 4.50537 4.64737 4.66997 4.72689 4.86115 4.87520 4.94974 4.98486 5.08454 5.18372 5.20086 5.44559 5.47604 5.59814 5.72611 5.76086 6.30254 6.36290 6.80880 6.82055 7.22388 7.44418 8.95462 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.025248 B = 0.002760 C = 0.002621 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1108.728927 B =10141.396603 C =10679.350491 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.072 3.928 3 O -0.368 6.368 4 C 0.645 3.355 5 O -0.611 6.611 6 N -0.690 5.690 7 C 0.156 3.844 8 C -0.109 4.109 9 C 0.454 3.546 10 O -0.553 6.553 11 O -0.343 6.343 12 C 0.128 3.872 13 C 0.002 3.998 14 C -0.501 4.501 15 H 0.059 0.941 16 C 0.020 3.980 17 N -0.911 5.911 18 Si 0.953 3.047 19 H -0.262 1.262 20 H -0.285 1.285 21 H -0.281 1.281 22 C -0.175 4.175 23 C -0.150 4.150 24 H 0.102 0.898 25 H 0.069 0.931 26 H 0.071 0.929 27 H 0.068 0.932 28 H 0.066 0.934 29 H 0.426 0.574 30 H 0.069 0.931 31 H 0.062 0.938 32 H 0.141 0.859 33 H 0.150 0.850 34 H 0.039 0.961 35 H 0.049 0.951 36 H 0.260 0.740 37 H 0.093 0.907 38 H 0.087 0.913 39 H 0.068 0.932 40 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.022 -8.316 -5.812 22.446 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.002 4.002 3 O -0.282 6.282 4 C 0.398 3.602 5 O -0.502 6.502 6 N -0.351 5.351 7 C 0.032 3.968 8 C -0.146 4.146 9 C 0.299 3.701 10 O -0.445 6.445 11 O -0.259 6.259 12 C 0.054 3.946 13 C 0.002 3.998 14 C -0.539 4.539 15 H 0.077 0.923 16 C -0.180 4.180 17 N -0.549 5.549 18 Si 0.779 3.221 19 H -0.186 1.186 20 H -0.211 1.211 21 H -0.207 1.207 22 C -0.212 4.212 23 C -0.187 4.187 24 H 0.121 0.879 25 H 0.088 0.912 26 H 0.090 0.910 27 H 0.086 0.914 28 H 0.084 0.916 29 H 0.265 0.735 30 H 0.087 0.913 31 H 0.080 0.920 32 H 0.159 0.841 33 H 0.168 0.832 34 H 0.057 0.943 35 H 0.068 0.932 36 H 0.069 0.931 37 H 0.111 0.889 38 H 0.105 0.895 39 H 0.087 0.913 40 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -19.328 -9.124 -5.701 22.120 hybrid contribution 0.569 0.405 1.007 1.225 sum -18.759 -8.719 -4.694 21.212 Atomic orbital electron populations 1.21846 0.89927 1.04548 1.03864 1.23264 0.96729 0.77621 1.02628 1.86254 1.20575 1.34707 1.86654 1.18230 0.81551 0.84359 0.76031 1.91009 1.60878 1.41174 1.57175 1.44332 1.07768 1.05593 1.77446 1.20856 0.77760 0.94916 1.03243 1.21432 0.86729 0.96636 1.09843 1.24164 0.93488 0.80919 0.71556 1.90661 1.63409 1.42857 1.47540 1.86502 1.26459 1.30460 1.82439 1.22516 0.75057 0.98140 0.98907 1.18906 0.98743 0.89817 0.92348 1.20683 1.05475 1.29823 0.97875 0.92307 1.25753 0.94990 0.96416 1.00841 1.70120 1.15039 1.38913 1.30840 0.85581 0.78501 0.78913 0.79143 1.18629 1.21090 1.20664 1.23022 1.00837 1.00945 0.96378 1.22477 0.90628 1.02064 1.03566 0.87932 0.91168 0.91032 0.91383 0.91560 0.73502 0.91283 0.91959 0.84137 0.83225 0.94259 0.93249 0.93081 0.88916 0.89497 0.91288 0.90552 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.24 10.29 71.98 0.74 -0.50 16 2 C 0.07 1.12 6.19 71.98 0.45 1.56 16 3 O -0.37 -7.24 10.27 -55.47 -0.57 -7.81 16 4 C 0.65 15.71 8.75 129.79 1.14 16.84 16 5 O -0.61 -19.92 16.13 19.80 0.32 -19.60 16 6 N -0.69 -12.77 5.56 -590.84 -3.29 -16.05 16 7 C 0.16 3.54 4.96 86.38 0.43 3.97 16 8 C -0.11 -2.18 5.92 29.85 0.18 -2.01 16 9 C 0.45 15.48 7.96 71.23 0.57 16.04 16 10 O -0.55 -22.75 15.73 21.95 0.35 -22.41 16 11 O -0.34 -13.86 10.16 -51.35 -0.52 -14.38 16 12 C 0.13 5.93 5.29 71.98 0.38 6.32 16 13 C 0.00 0.11 1.62 -52.93 -0.09 0.03 16 14 C -0.50 -26.67 8.78 25.60 0.22 -26.45 16 15 H 0.06 3.11 7.82 -2.91 -0.02 3.08 16 16 C 0.02 1.08 5.38 84.65 0.46 1.54 16 17 N -0.91 -51.75 12.88 21.45 0.28 -51.47 16 18 Si 0.95 42.54 29.54 68.60 2.03 44.56 16 19 H -0.26 -11.21 7.11 99.48 0.71 -10.50 16 20 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 21 H -0.28 -12.34 7.11 99.48 0.71 -11.63 16 22 C -0.17 -7.09 9.96 30.62 0.30 -6.78 16 23 C -0.15 -6.80 9.37 30.62 0.29 -6.51 16 24 H 0.10 0.48 8.14 -2.38 -0.02 0.46 16 25 H 0.07 0.58 8.14 -2.39 -0.02 0.56 16 26 H 0.07 0.57 8.14 -2.39 -0.02 0.55 16 27 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 28 H 0.07 1.09 8.14 -2.38 -0.02 1.07 16 29 H 0.43 4.72 8.58 -92.71 -0.80 3.92 16 30 H 0.07 1.79 8.10 -2.39 -0.02 1.77 16 31 H 0.06 1.71 8.10 -2.39 -0.02 1.69 16 32 H 0.14 2.18 8.14 -2.39 -0.02 2.17 16 33 H 0.15 1.96 8.14 -2.38 -0.02 1.94 16 34 H 0.04 2.09 8.13 -2.38 -0.02 2.07 16 35 H 0.05 2.15 8.09 -2.38 -0.02 2.13 16 36 H 0.26 14.14 8.31 -92.71 -0.77 13.37 16 37 H 0.09 3.27 8.14 -2.39 -0.02 3.25 16 38 H 0.09 3.41 8.14 -2.39 -0.02 3.40 16 39 H 0.07 3.35 8.14 -2.39 -0.02 3.33 16 40 H 0.08 3.24 8.14 -2.38 -0.02 3.22 16 Total: -1.00 -72.04 352.76 3.89 -68.15 By element: Atomic # 1 Polarization: 14.73 SS G_CDS: 0.24 Total: 14.97 kcal Atomic # 6 Polarization: -1.01 SS G_CDS: 5.06 Total: 4.05 kcal Atomic # 7 Polarization: -64.52 SS G_CDS: -3.01 Total: -67.53 kcal Atomic # 8 Polarization: -63.78 SS G_CDS: -0.43 Total: -64.21 kcal Atomic # 14 Polarization: 42.54 SS G_CDS: 2.03 Total: 44.56 kcal Total: -72.04 3.89 -68.15 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491858450.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -106.108 kcal (2) G-P(sol) polarization free energy of solvation -72.041 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -178.148 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.893 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.148 kcal (6) G-S(sol) free energy of system = (1) + (5) -174.255 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds