Wall clock time and date at job start Tue Mar 31 2020 05:48:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53007 * 109.47021 * 2 1 4 4 C 1.52991 * 109.47361 * 239.99425 * 2 1 3 5 5 O 1.45203 * 109.47089 * 119.99178 * 2 1 3 6 6 C 1.34635 * 116.99531 * 60.00061 * 5 2 1 7 7 O 1.21517 * 120.00303 * 359.97438 * 6 5 2 8 8 N 1.34780 * 120.00103 * 179.97438 * 6 5 2 9 9 C 1.47579 * 134.49439 * 180.02562 * 8 6 5 10 10 C 1.53950 * 86.11621 * 204.63969 * 9 8 6 11 11 C 1.53004 * 113.73988 * 221.94050 * 10 9 8 12 12 C 1.50700 * 109.46957 * 183.07339 * 11 10 9 13 13 O 1.21216 * 120.00025 * 0.02562 * 12 11 10 14 14 O 1.34308 * 120.00105 * 180.02562 * 12 11 10 15 15 C 1.34918 * 117.00253 * 180.02562 * 14 12 11 16 16 H 1.08000 * 119.99764 * 359.97438 * 15 14 12 17 17 C 1.38754 * 120.00293 * 179.97438 * 15 14 12 18 18 N 1.31442 * 119.99798 * 359.97438 * 17 15 14 19 19 Si 1.86798 * 120.00167 * 179.97438 * 17 15 14 20 20 H 1.48497 * 109.47129 * 0.02562 * 19 17 15 21 21 H 1.48505 * 109.47224 * 119.99705 * 19 17 15 22 22 H 1.48496 * 109.47079 * 239.99745 * 19 17 15 23 23 C 1.47925 * 134.49772 * 0.02562 * 8 6 5 24 24 H 1.08998 * 109.47383 * 300.00728 * 1 2 3 25 25 H 1.09005 * 109.47304 * 60.00233 * 1 2 3 26 26 H 1.08995 * 109.47074 * 180.02562 * 1 2 3 27 27 H 1.08995 * 109.46800 * 180.02562 * 3 2 1 28 28 H 1.09005 * 109.46363 * 299.99466 * 3 2 1 29 29 H 1.08998 * 109.47637 * 59.99427 * 3 2 1 30 30 H 1.09000 * 109.47231 * 300.00556 * 4 2 1 31 31 H 1.09005 * 109.47089 * 60.00206 * 4 2 1 32 32 H 1.09000 * 109.47212 * 179.97438 * 4 2 1 33 33 H 1.09003 * 113.77049 * 90.34034 * 9 8 6 34 34 H 1.08993 * 113.77081 * 318.93795 * 9 8 6 35 35 H 1.09002 * 113.74276 * 90.74001 * 10 9 8 36 36 H 1.08998 * 109.46823 * 303.07465 * 11 10 9 37 37 H 1.08998 * 109.46745 * 63.07477 * 11 10 9 38 38 H 0.96995 * 120.00187 * 179.97438 * 18 17 15 39 39 H 1.09006 * 113.87423 * 41.10256 * 23 8 6 40 40 H 1.08997 * 113.77410 * 269.60428 * 23 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7213 -1.2491 5 8 2.0140 -0.6843 1.1857 6 6 1.6522 -1.9721 1.3385 7 8 0.9508 -2.5094 0.5042 8 7 2.0679 -2.6655 2.4169 9 6 1.8732 -4.0477 2.8959 10 6 2.1488 -3.4876 4.3032 11 6 3.0481 -4.3834 5.1575 12 6 3.1926 -3.7846 6.5329 13 8 2.6316 -2.7446 6.8031 14 8 3.9431 -4.4031 7.4592 15 6 4.0302 -3.8143 8.6699 16 1 3.5097 -2.8869 8.8581 17 6 4.7886 -4.4001 9.6734 18 7 5.4217 -5.5291 9.4445 19 14 4.9098 -3.5845 11.3495 20 1 4.1103 -2.3331 11.3500 21 1 4.3849 -4.5070 12.3881 22 1 6.3300 -3.2653 11.6431 23 6 2.9027 -2.3468 3.5958 24 1 -0.3634 0.5139 0.8899 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0276 0.0005 27 1 3.1299 1.4425 -0.0005 28 1 1.6766 1.9563 -0.8901 29 1 1.6766 1.9565 0.8899 30 1 1.6766 -1.7490 -1.2491 31 1 1.6767 -0.2075 -2.1392 32 1 3.1300 -0.7209 -1.2493 33 1 2.6330 -4.7457 2.5443 34 1 0.8575 -4.4200 2.7625 35 1 1.2516 -3.1609 4.8290 36 1 2.6022 -5.3748 5.2378 37 1 4.0299 -4.4632 4.6909 38 1 5.9522 -5.9384 10.1458 39 1 2.7083 -1.3620 4.0208 40 1 3.9642 -2.5461 3.4494 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000493096336.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:48:37 Heat of formation + Delta-G solvation = -129.754616 kcal Electronic energy + Delta-G solvation = -22529.770153 eV Core-core repulsion = 18925.613126 eV Total energy + Delta-G solvation = -3604.157027 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 285.145 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -40.87305 -39.60144 -38.60712 -36.58359 -35.18177 -34.14371 -32.17498 -31.53005 -27.69989 -27.57908 -27.55090 -26.25099 -25.16972 -22.42945 -20.83294 -19.59291 -19.25338 -17.75782 -17.71210 -16.77078 -16.61525 -16.30270 -15.57043 -15.14713 -14.84094 -14.56056 -14.35992 -14.12071 -13.97543 -13.34414 -12.87326 -12.67718 -12.65289 -12.34667 -12.26424 -12.09260 -12.06526 -11.85501 -11.64057 -11.55841 -11.26610 -11.18066 -11.12900 -10.66432 -10.47759 -10.41223 -10.36820 -10.01208 -9.80783 -9.04346 -8.80291 -8.59530 -6.42568 -4.10376 1.95455 2.84242 3.08823 3.18597 3.25816 3.51505 3.68041 3.89356 4.29396 4.53971 4.58118 4.66237 4.72135 4.94120 5.09648 5.12111 5.16350 5.26819 5.34009 5.35276 5.47759 5.49274 5.50562 5.56970 5.63684 5.67108 5.78490 5.83710 5.87327 5.99219 6.10433 6.15266 6.38721 6.44034 6.76848 7.39074 7.65194 7.94279 8.31231 8.70386 9.06808 9.84181 10.75546 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.035753 B = 0.002863 C = 0.002745 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 782.965097 B = 9775.916534 C =10197.496766 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.134 3.866 3 C -0.140 4.140 4 C -0.182 4.182 5 O -0.361 6.361 6 C 0.673 3.327 7 O -0.575 6.575 8 N -0.634 5.634 9 C 0.135 3.865 10 C -0.103 4.103 11 C -0.096 4.096 12 C 0.397 3.603 13 O -0.556 6.556 14 O -0.216 6.216 15 C -0.381 4.381 16 H 0.096 0.904 17 C 0.041 3.959 18 N -0.866 5.866 19 Si 0.941 3.059 20 H -0.266 1.266 21 H -0.276 1.276 22 H -0.276 1.276 23 C 0.115 3.885 24 H 0.060 0.940 25 H 0.068 0.932 26 H 0.087 0.913 27 H 0.066 0.934 28 H 0.079 0.921 29 H 0.067 0.933 30 H 0.087 0.913 31 H 0.069 0.931 32 H 0.059 0.941 33 H 0.091 0.909 34 H 0.087 0.913 35 H 0.115 0.885 36 H 0.100 0.900 37 H 0.096 0.904 38 H 0.269 0.731 39 H 0.090 0.910 40 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.274 7.236 -17.393 19.562 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C 0.098 3.902 3 C -0.198 4.198 4 C -0.240 4.240 5 O -0.275 6.275 6 C 0.430 3.570 7 O -0.466 6.466 8 N -0.376 5.376 9 C 0.015 3.985 10 C -0.122 4.122 11 C -0.134 4.134 12 C 0.243 3.757 13 O -0.453 6.453 14 O -0.123 6.123 15 C -0.457 4.457 16 H 0.114 0.886 17 C -0.163 4.163 18 N -0.503 5.503 19 Si 0.766 3.234 20 H -0.190 1.190 21 H -0.202 1.202 22 H -0.202 1.202 23 C -0.007 4.007 24 H 0.079 0.921 25 H 0.087 0.913 26 H 0.106 0.894 27 H 0.085 0.915 28 H 0.098 0.902 29 H 0.086 0.914 30 H 0.106 0.894 31 H 0.087 0.913 32 H 0.078 0.922 33 H 0.109 0.891 34 H 0.105 0.895 35 H 0.133 0.867 36 H 0.119 0.881 37 H 0.115 0.885 38 H 0.079 0.921 39 H 0.108 0.892 40 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -5.559 7.377 -17.691 19.958 hybrid contribution 0.160 0.380 0.719 0.828 sum -5.400 7.756 -16.973 19.427 Atomic orbital electron populations 1.22515 0.94072 1.05053 1.02385 1.22058 0.94380 0.91561 0.82245 1.21855 1.02279 0.92570 1.03060 1.22507 1.01524 1.03478 0.96444 1.86339 1.71296 1.23733 1.46162 1.17517 0.78839 0.80337 0.80313 1.90873 1.42227 1.70819 1.42662 1.48808 1.53435 1.14116 1.21203 1.23316 1.02873 0.82457 0.89892 1.22955 1.00514 0.95412 0.93346 1.21036 1.01283 0.99949 0.91177 1.23073 0.80188 0.84672 0.87755 1.90563 1.48501 1.24921 1.81359 1.83872 1.58122 1.48988 1.21329 1.21260 1.31465 1.08002 0.85019 0.88637 1.25330 0.95505 0.95955 0.99463 1.69994 1.29401 1.16912 1.33995 0.85634 0.78383 0.79136 0.80235 1.18963 1.20204 1.20198 1.23448 0.95449 1.00971 0.80859 0.92134 0.91274 0.89398 0.91471 0.90237 0.91396 0.89432 0.91252 0.92227 0.89080 0.89479 0.86681 0.88137 0.88535 0.92144 0.89204 0.89289 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.95 8.37 37.16 0.31 -1.64 16 2 C 0.13 1.49 1.13 -90.62 -0.10 1.39 16 3 C -0.14 -1.18 8.85 37.16 0.33 -0.85 16 4 C -0.18 -1.89 8.37 37.15 0.31 -1.58 16 5 O -0.36 -5.07 9.88 -40.31 -0.40 -5.47 16 6 C 0.67 10.23 8.22 54.06 0.44 10.68 16 7 O -0.58 -9.50 12.61 -19.29 -0.24 -9.74 16 8 N -0.63 -8.82 3.62 -183.87 -0.66 -9.48 16 9 C 0.14 1.57 8.40 -2.97 -0.02 1.54 16 10 C -0.10 -1.40 3.29 -89.69 -0.30 -1.69 16 11 C -0.10 -1.47 5.65 -27.88 -0.16 -1.63 16 12 C 0.40 8.99 7.91 36.01 0.28 9.27 16 13 O -0.56 -13.83 15.03 -19.06 -0.29 -14.11 16 14 O -0.22 -5.92 9.75 -20.69 -0.20 -6.12 16 15 C -0.38 -10.99 9.65 30.92 0.30 -10.69 16 16 H 0.10 2.78 6.86 -52.49 -0.36 2.42 16 17 C 0.04 1.14 5.49 -17.53 -0.10 1.05 16 18 N -0.87 -24.94 13.67 55.48 0.76 -24.18 16 19 Si 0.94 20.95 29.55 -169.99 -5.02 15.93 16 20 H -0.27 -5.83 7.11 56.52 0.40 -5.43 16 21 H -0.28 -5.97 7.11 56.52 0.40 -5.57 16 22 H -0.28 -5.96 7.11 56.52 0.40 -5.56 16 23 C 0.11 1.55 8.45 -2.77 -0.02 1.52 16 24 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 25 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 26 H 0.09 1.14 5.88 -51.93 -0.31 0.84 16 27 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 28 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 29 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 30 H 0.09 1.11 5.88 -51.93 -0.31 0.81 16 31 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 32 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 33 H 0.09 0.88 8.10 -51.93 -0.42 0.46 16 34 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 35 H 0.12 1.73 7.74 -51.93 -0.40 1.33 16 36 H 0.10 1.35 8.14 -51.93 -0.42 0.93 16 37 H 0.10 1.30 7.88 -51.93 -0.41 0.89 16 38 H 0.27 7.08 8.31 -40.82 -0.34 6.74 16 39 H 0.09 1.29 8.14 -51.93 -0.42 0.86 16 40 H 0.09 1.08 7.92 -51.93 -0.41 0.67 16 LS Contribution 339.18 15.07 5.11 5.11 Total: -1.00 -34.10 339.18 -5.64 -39.74 By element: Atomic # 1 Polarization: 6.92 SS G_CDS: -5.98 Total: 0.95 kcal Atomic # 6 Polarization: 6.10 SS G_CDS: 1.28 Total: 7.38 kcal Atomic # 7 Polarization: -33.75 SS G_CDS: 0.09 Total: -33.66 kcal Atomic # 8 Polarization: -34.32 SS G_CDS: -1.13 Total: -35.45 kcal Atomic # 14 Polarization: 20.95 SS G_CDS: -5.02 Total: 15.93 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -34.10 -5.64 -39.74 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000493096336.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -90.010 kcal (2) G-P(sol) polarization free energy of solvation -34.100 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.111 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.644 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.744 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.755 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds