Wall clock time and date at job start Tue Mar 31 2020 05:48:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53007 * 109.47021 * 2 1 4 4 C 1.52991 * 109.47361 * 239.99425 * 2 1 3 5 5 O 1.45203 * 109.47089 * 119.99178 * 2 1 3 6 6 C 1.34635 * 116.99531 * 60.00061 * 5 2 1 7 7 O 1.21517 * 120.00303 * 359.97438 * 6 5 2 8 8 N 1.34780 * 120.00103 * 179.97438 * 6 5 2 9 9 C 1.47579 * 134.49439 * 180.02562 * 8 6 5 10 10 C 1.53950 * 86.11621 * 204.63969 * 9 8 6 11 11 C 1.53004 * 113.73988 * 221.94050 * 10 9 8 12 12 C 1.50700 * 109.46957 * 183.07339 * 11 10 9 13 13 O 1.21216 * 120.00025 * 0.02562 * 12 11 10 14 14 O 1.34308 * 120.00105 * 180.02562 * 12 11 10 15 15 C 1.34918 * 117.00253 * 180.02562 * 14 12 11 16 16 H 1.08000 * 119.99764 * 359.97438 * 15 14 12 17 17 C 1.38754 * 120.00293 * 179.97438 * 15 14 12 18 18 N 1.31442 * 119.99798 * 359.97438 * 17 15 14 19 19 Si 1.86798 * 120.00167 * 179.97438 * 17 15 14 20 20 H 1.48497 * 109.47129 * 0.02562 * 19 17 15 21 21 H 1.48505 * 109.47224 * 119.99705 * 19 17 15 22 22 H 1.48496 * 109.47079 * 239.99745 * 19 17 15 23 23 C 1.47925 * 134.49772 * 0.02562 * 8 6 5 24 24 H 1.08998 * 109.47383 * 300.00728 * 1 2 3 25 25 H 1.09005 * 109.47304 * 60.00233 * 1 2 3 26 26 H 1.08995 * 109.47074 * 180.02562 * 1 2 3 27 27 H 1.08995 * 109.46800 * 180.02562 * 3 2 1 28 28 H 1.09005 * 109.46363 * 299.99466 * 3 2 1 29 29 H 1.08998 * 109.47637 * 59.99427 * 3 2 1 30 30 H 1.09000 * 109.47231 * 300.00556 * 4 2 1 31 31 H 1.09005 * 109.47089 * 60.00206 * 4 2 1 32 32 H 1.09000 * 109.47212 * 179.97438 * 4 2 1 33 33 H 1.09003 * 113.77049 * 90.34034 * 9 8 6 34 34 H 1.08993 * 113.77081 * 318.93795 * 9 8 6 35 35 H 1.09002 * 113.74276 * 90.74001 * 10 9 8 36 36 H 1.08998 * 109.46823 * 303.07465 * 11 10 9 37 37 H 1.08998 * 109.46745 * 63.07477 * 11 10 9 38 38 H 0.96995 * 120.00187 * 179.97438 * 18 17 15 39 39 H 1.09006 * 113.87423 * 41.10256 * 23 8 6 40 40 H 1.08997 * 113.77410 * 269.60428 * 23 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7213 -1.2491 5 8 2.0140 -0.6843 1.1857 6 6 1.6522 -1.9721 1.3385 7 8 0.9508 -2.5094 0.5042 8 7 2.0679 -2.6655 2.4169 9 6 1.8732 -4.0477 2.8959 10 6 2.1488 -3.4876 4.3032 11 6 3.0481 -4.3834 5.1575 12 6 3.1926 -3.7846 6.5329 13 8 2.6316 -2.7446 6.8031 14 8 3.9431 -4.4031 7.4592 15 6 4.0302 -3.8143 8.6699 16 1 3.5097 -2.8869 8.8581 17 6 4.7886 -4.4001 9.6734 18 7 5.4217 -5.5291 9.4445 19 14 4.9098 -3.5845 11.3495 20 1 4.1103 -2.3331 11.3500 21 1 4.3849 -4.5070 12.3881 22 1 6.3300 -3.2653 11.6431 23 6 2.9027 -2.3468 3.5958 24 1 -0.3634 0.5139 0.8899 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0276 0.0005 27 1 3.1299 1.4425 -0.0005 28 1 1.6766 1.9563 -0.8901 29 1 1.6766 1.9565 0.8899 30 1 1.6766 -1.7490 -1.2491 31 1 1.6767 -0.2075 -2.1392 32 1 3.1300 -0.7209 -1.2493 33 1 2.6330 -4.7457 2.5443 34 1 0.8575 -4.4200 2.7625 35 1 1.2516 -3.1609 4.8290 36 1 2.6022 -5.3748 5.2378 37 1 4.0299 -4.4632 4.6909 38 1 5.9522 -5.9384 10.1458 39 1 2.7083 -1.3620 4.0208 40 1 3.9642 -2.5461 3.4494 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000493096336.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:48:36 Heat of formation + Delta-G solvation = -151.571287 kcal Electronic energy + Delta-G solvation = -22530.716195 eV Core-core repulsion = 18925.613126 eV Total energy + Delta-G solvation = -3605.103069 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 285.145 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.95581 -41.07419 -40.08876 -37.70281 -37.10011 -35.08014 -34.25277 -32.82063 -29.02077 -28.37833 -28.31976 -27.28077 -27.12241 -23.65557 -22.17025 -20.93891 -20.28042 -19.80731 -18.79462 -18.42888 -17.76316 -17.46313 -16.90529 -16.62955 -16.22521 -16.20791 -15.70529 -15.21731 -15.10966 -14.42571 -14.22699 -14.00366 -13.68185 -13.44885 -13.36302 -13.17932 -13.08812 -12.92888 -12.88645 -12.78955 -12.59862 -12.34050 -12.30565 -12.19604 -12.10546 -11.90480 -11.72127 -11.41296 -11.08451 -10.93105 -10.65606 -9.87127 -8.50023 -6.28630 0.96330 1.34070 1.37202 1.54591 1.71096 1.72987 2.15039 2.67213 2.79534 3.01851 3.43533 3.73413 3.77979 3.84256 3.90220 3.93306 4.20224 4.26496 4.48040 4.54043 4.57934 4.60082 4.62888 4.71450 4.74423 4.80747 4.81558 4.85496 4.88853 4.97098 5.09841 5.24024 5.26282 5.28601 5.31161 5.46409 5.88789 6.55392 6.77044 6.96707 7.20717 7.84797 8.70916 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.035753 B = 0.002863 C = 0.002745 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 782.965097 B = 9775.916534 C =10197.496766 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.120 3.880 3 C -0.136 4.136 4 C -0.176 4.176 5 O -0.373 6.373 6 C 0.667 3.333 7 O -0.593 6.593 8 N -0.639 5.639 9 C 0.145 3.855 10 C -0.099 4.099 11 C -0.082 4.082 12 C 0.396 3.604 13 O -0.582 6.582 14 O -0.248 6.248 15 C -0.416 4.416 16 H 0.080 0.920 17 C -0.005 4.005 18 N -0.904 5.904 19 Si 1.013 2.987 20 H -0.266 1.266 21 H -0.262 1.262 22 H -0.261 1.261 23 C 0.113 3.887 24 H 0.056 0.944 25 H 0.095 0.905 26 H 0.061 0.939 27 H 0.067 0.933 28 H 0.107 0.893 29 H 0.064 0.936 30 H 0.061 0.939 31 H 0.094 0.906 32 H 0.060 0.940 33 H 0.121 0.879 34 H 0.095 0.905 35 H 0.096 0.904 36 H 0.127 0.873 37 H 0.125 0.875 38 H 0.277 0.723 39 H 0.074 0.926 40 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.981 7.617 -18.207 20.355 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C 0.084 3.916 3 C -0.193 4.193 4 C -0.234 4.234 5 O -0.288 6.288 6 C 0.423 3.577 7 O -0.485 6.485 8 N -0.381 5.381 9 C 0.025 3.975 10 C -0.118 4.118 11 C -0.120 4.120 12 C 0.244 3.756 13 O -0.480 6.480 14 O -0.157 6.157 15 C -0.492 4.492 16 H 0.098 0.902 17 C -0.205 4.205 18 N -0.541 5.541 19 Si 0.832 3.168 20 H -0.190 1.190 21 H -0.187 1.187 22 H -0.186 1.186 23 C -0.009 4.009 24 H 0.075 0.925 25 H 0.114 0.886 26 H 0.080 0.920 27 H 0.086 0.914 28 H 0.125 0.875 29 H 0.083 0.917 30 H 0.080 0.920 31 H 0.113 0.887 32 H 0.079 0.921 33 H 0.138 0.862 34 H 0.114 0.886 35 H 0.114 0.886 36 H 0.145 0.855 37 H 0.143 0.857 38 H 0.086 0.914 39 H 0.093 0.907 40 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -5.273 7.757 -18.525 20.764 hybrid contribution -0.002 0.314 0.855 0.910 sum -5.275 8.071 -17.670 20.130 Atomic orbital electron populations 1.22467 0.93946 1.03622 1.03531 1.22488 0.94732 0.92794 0.81624 1.21888 1.02367 0.90731 1.04276 1.22447 1.01551 1.02161 0.97198 1.86347 1.71489 1.23287 1.47635 1.17696 0.78802 0.80721 0.80439 1.90863 1.43028 1.71289 1.43358 1.48938 1.53254 1.15056 1.20884 1.23432 1.04429 0.81949 0.87646 1.22798 0.99436 0.95572 0.93988 1.21179 1.03448 1.00796 0.86579 1.24541 0.77799 0.83996 0.89245 1.90541 1.48963 1.26249 1.82231 1.83898 1.59976 1.50107 1.21717 1.21382 1.32951 1.08318 0.86552 0.90213 1.26442 0.94392 0.96423 1.03227 1.70067 1.30099 1.18227 1.35757 0.84627 0.79049 0.78123 0.74976 1.18989 1.18680 1.18605 1.23512 0.96413 1.00233 0.80703 0.92473 0.88630 0.92005 0.91351 0.87490 0.91689 0.91986 0.88699 0.92072 0.86156 0.88649 0.88595 0.85493 0.85742 0.91351 0.90741 0.87493 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.66 8.37 71.98 0.60 -3.06 16 2 C 0.12 2.53 1.13 -10.79 -0.01 2.52 16 3 C -0.14 -2.01 8.85 71.98 0.64 -1.37 16 4 C -0.18 -3.44 8.37 71.98 0.60 -2.84 16 5 O -0.37 -10.38 9.88 -55.45 -0.55 -10.92 16 6 C 0.67 20.04 8.22 129.79 1.07 21.11 16 7 O -0.59 -19.54 12.61 19.79 0.25 -19.29 16 8 N -0.64 -17.14 3.62 -966.05 -3.49 -20.63 16 9 C 0.15 3.04 8.40 86.49 0.73 3.77 16 10 C -0.10 -2.55 3.29 -10.13 -0.03 -2.58 16 11 C -0.08 -2.36 5.65 29.85 0.17 -2.19 16 12 C 0.40 18.03 7.91 71.24 0.56 18.60 16 13 O -0.58 -29.55 15.03 20.76 0.31 -29.24 16 14 O -0.25 -13.87 9.75 14.92 0.15 -13.73 16 15 C -0.42 -24.56 9.65 67.94 0.66 -23.90 16 16 H 0.08 4.81 6.86 -2.91 -0.02 4.79 16 17 C 0.00 -0.27 5.49 84.87 0.47 0.19 16 18 N -0.90 -52.35 13.67 21.62 0.30 -52.06 16 19 Si 1.01 42.83 29.55 68.60 2.03 44.86 16 20 H -0.27 -11.10 7.11 99.48 0.71 -10.39 16 21 H -0.26 -10.42 7.11 99.48 0.71 -9.71 16 22 H -0.26 -10.36 7.11 99.48 0.71 -9.66 16 23 C 0.11 2.95 8.45 86.42 0.73 3.68 16 24 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 25 H 0.09 1.39 8.14 -2.38 -0.02 1.37 16 26 H 0.06 1.61 5.88 -2.39 -0.01 1.60 16 27 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 28 H 0.11 0.99 8.14 -2.38 -0.02 0.97 16 29 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 30 H 0.06 1.55 5.88 -2.39 -0.01 1.54 16 31 H 0.09 1.31 8.14 -2.38 -0.02 1.29 16 32 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 33 H 0.12 1.88 8.10 -2.39 -0.02 1.86 16 34 H 0.10 1.88 8.14 -2.39 -0.02 1.86 16 35 H 0.10 2.88 7.74 -2.39 -0.02 2.86 16 36 H 0.13 3.07 8.14 -2.39 -0.02 3.05 16 37 H 0.12 2.98 7.88 -2.39 -0.02 2.96 16 38 H 0.28 14.57 8.31 -92.71 -0.77 13.80 16 39 H 0.07 2.16 8.14 -2.38 -0.02 2.14 16 40 H 0.11 2.40 7.92 -2.39 -0.02 2.38 16 Total: -1.00 -76.33 339.18 6.20 -70.13 By element: Atomic # 1 Polarization: 15.93 SS G_CDS: 1.03 Total: 16.96 kcal Atomic # 6 Polarization: 7.75 SS G_CDS: 6.18 Total: 13.92 kcal Atomic # 7 Polarization: -69.49 SS G_CDS: -3.20 Total: -72.69 kcal Atomic # 8 Polarization: -73.34 SS G_CDS: 0.16 Total: -73.18 kcal Atomic # 14 Polarization: 42.83 SS G_CDS: 2.03 Total: 44.86 kcal Total: -76.33 6.20 -70.13 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000493096336.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.443 kcal (2) G-P(sol) polarization free energy of solvation -76.325 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -157.768 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.197 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.128 kcal (6) G-S(sol) free energy of system = (1) + (5) -151.571 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds