Wall clock time and date at job start Tue Mar 31 2020 05:48:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47282 * 2 1 4 4 C 1.52993 * 109.47412 * 239.99515 * 2 1 3 5 5 O 1.45202 * 109.46734 * 119.99657 * 2 1 3 6 6 C 1.34642 * 116.99936 * 60.00028 * 5 2 1 7 7 O 1.21503 * 119.99921 * 0.02562 * 6 5 2 8 8 N 1.34778 * 119.99943 * 179.97438 * 6 5 2 9 9 C 1.46501 * 119.99966 * 180.27690 * 8 6 5 10 10 C 1.52993 * 109.46781 * 174.41812 * 9 8 6 11 11 C 1.50700 * 115.55066 * 294.72565 * 10 9 8 12 12 O 1.21211 * 119.99739 * 114.56298 * 11 10 9 13 13 O 1.34309 * 120.00620 * 294.56389 * 11 10 9 14 14 C 1.34912 * 117.00244 * 179.97438 * 13 11 10 15 15 H 1.07999 * 119.99986 * 0.02562 * 14 13 11 16 16 C 1.38762 * 119.99961 * 180.02562 * 14 13 11 17 17 N 1.31441 * 119.99947 * 359.97438 * 16 14 13 18 18 Si 1.86800 * 120.00071 * 179.97438 * 16 14 13 19 19 H 1.48510 * 109.47020 * 359.97438 * 18 16 14 20 20 H 1.48500 * 109.47169 * 119.99601 * 18 16 14 21 21 H 1.48494 * 109.47139 * 239.99811 * 18 16 14 22 22 C 1.53005 * 117.49691 * 149.06313 * 10 9 8 23 23 C 1.53003 * 117.50391 * 80.40525 * 10 9 8 24 24 H 1.08995 * 109.47300 * 300.00830 * 1 2 3 25 25 H 1.09011 * 109.46734 * 60.00008 * 1 2 3 26 26 H 1.08997 * 109.47494 * 180.02562 * 1 2 3 27 27 H 1.09003 * 109.47201 * 179.97438 * 3 2 1 28 28 H 1.08998 * 109.47106 * 299.99404 * 3 2 1 29 29 H 1.09001 * 109.47348 * 59.99688 * 3 2 1 30 30 H 1.09001 * 109.47356 * 300.00191 * 4 2 1 31 31 H 1.08999 * 109.47225 * 60.00002 * 4 2 1 32 32 H 1.08997 * 109.47503 * 180.02562 * 4 2 1 33 33 H 0.97006 * 120.00138 * 0.02562 * 8 6 5 34 34 H 1.09000 * 109.46969 * 294.41795 * 9 8 6 35 35 H 1.08996 * 109.46876 * 54.41803 * 9 8 6 36 36 H 0.96996 * 120.00057 * 180.02562 * 17 16 14 37 37 H 1.08994 * 117.49935 * 0.02562 * 22 10 9 38 38 H 1.09002 * 117.49686 * 145.01548 * 22 10 9 39 39 H 1.08997 * 117.49896 * 214.97409 * 23 10 9 40 40 H 1.09000 * 117.49207 * 359.97271 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2491 5 8 2.0139 -0.6844 1.1856 6 6 1.6521 -1.9723 1.3385 7 8 0.9515 -2.5096 0.5037 8 7 2.0678 -2.6656 2.4168 9 6 1.6791 -4.0687 2.5801 10 6 2.3899 -4.6560 3.8009 11 6 3.8903 -4.7501 3.6966 12 8 4.5916 -4.0858 4.4288 13 8 4.4506 -5.5701 2.7923 14 6 5.7986 -5.6065 2.7508 15 1 6.3765 -4.9935 3.4266 16 6 6.4426 -6.4317 1.8399 17 7 5.7394 -7.1782 1.0178 18 14 8.3091 -6.4817 1.7819 19 1 8.8610 -5.5546 2.8024 20 1 8.7762 -7.8630 2.0631 21 1 8.7737 -6.0667 0.4340 22 6 1.6654 -5.7567 4.5785 23 6 1.7950 -4.3542 5.1779 24 1 -0.3633 0.5139 0.8899 25 1 -0.3633 0.5139 -0.8901 26 1 -0.3634 -1.0276 0.0005 27 1 3.1300 1.4425 0.0005 28 1 1.6768 1.9563 -0.8900 29 1 1.6767 1.9564 0.8900 30 1 1.6767 -1.7490 -1.2491 31 1 1.6767 -0.2076 -2.1391 32 1 3.1300 -0.7217 -1.2489 33 1 2.6274 -2.2367 3.0831 34 1 0.6003 -4.1327 2.7220 35 1 1.9623 -4.6301 1.6898 36 1 6.1895 -7.7553 0.3813 37 1 0.6827 -6.0627 4.2200 38 1 2.2742 -6.5487 5.0149 39 1 2.4889 -4.2241 6.0083 40 1 0.8975 -3.7368 5.2139 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000495349088.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:48:56 Heat of formation + Delta-G solvation = -140.419372 kcal Electronic energy + Delta-G solvation = -23240.967052 eV Core-core repulsion = 19636.347567 eV Total energy + Delta-G solvation = -3604.619486 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 285.145 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -40.60770 -39.49599 -37.58514 -36.64884 -34.93419 -34.29322 -33.48014 -32.15648 -27.45120 -27.39380 -27.36003 -25.67611 -23.11761 -22.39073 -21.87031 -19.97279 -19.09487 -18.01422 -17.72252 -16.79737 -16.29791 -16.03954 -15.27199 -14.99267 -14.83915 -14.37199 -14.35699 -14.19736 -13.73637 -13.38797 -13.20494 -12.79418 -12.53561 -12.16509 -11.97972 -11.90628 -11.85179 -11.53086 -11.39958 -11.35723 -11.28335 -11.24784 -10.61124 -10.45551 -10.30755 -10.28230 -10.19754 -9.88701 -9.70319 -9.11181 -8.87474 -8.60378 -6.43416 -4.11447 2.31326 3.04821 3.07365 3.17469 3.24909 3.37196 3.75680 3.99168 4.37307 4.43464 4.70753 4.73061 4.74977 4.89323 5.00053 5.07131 5.26927 5.40850 5.50105 5.55011 5.63257 5.72086 5.77468 5.78103 5.78804 5.86137 5.94086 6.05132 6.11414 6.23748 6.30160 6.34000 6.51676 6.68975 6.77154 7.36971 7.65582 7.91785 8.59071 8.66225 9.05029 9.82949 10.74173 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.014566 B = 0.004877 C = 0.004059 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1921.876153 B = 5740.336793 C = 6897.250158 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.136 3.864 3 C -0.140 4.140 4 C -0.185 4.185 5 O -0.365 6.365 6 C 0.652 3.348 7 O -0.572 6.572 8 N -0.703 5.703 9 C 0.184 3.816 10 C -0.138 4.138 11 C 0.429 3.571 12 O -0.551 6.551 13 O -0.203 6.203 14 C -0.384 4.384 15 H 0.096 0.904 16 C 0.044 3.956 17 N -0.860 5.860 18 Si 0.942 3.058 19 H -0.265 1.265 20 H -0.275 1.275 21 H -0.276 1.276 22 C -0.141 4.141 23 C -0.147 4.147 24 H 0.057 0.943 25 H 0.068 0.932 26 H 0.088 0.912 27 H 0.067 0.933 28 H 0.078 0.922 29 H 0.065 0.935 30 H 0.089 0.911 31 H 0.067 0.933 32 H 0.061 0.939 33 H 0.410 0.590 34 H 0.076 0.924 35 H 0.090 0.910 36 H 0.270 0.730 37 H 0.106 0.894 38 H 0.105 0.895 39 H 0.106 0.894 40 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.449 11.046 0.165 15.206 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C 0.099 3.901 3 C -0.197 4.197 4 C -0.242 4.242 5 O -0.280 6.280 6 C 0.405 3.595 7 O -0.461 6.461 8 N -0.362 5.362 9 C 0.061 3.939 10 C -0.139 4.139 11 C 0.275 3.725 12 O -0.449 6.449 13 O -0.110 6.110 14 C -0.460 4.460 15 H 0.114 0.886 16 C -0.161 4.161 17 N -0.497 5.497 18 Si 0.766 3.234 19 H -0.189 1.189 20 H -0.201 1.201 21 H -0.201 1.201 22 C -0.179 4.179 23 C -0.184 4.184 24 H 0.077 0.923 25 H 0.087 0.913 26 H 0.107 0.893 27 H 0.086 0.914 28 H 0.097 0.903 29 H 0.084 0.916 30 H 0.108 0.892 31 H 0.086 0.914 32 H 0.080 0.920 33 H 0.245 0.755 34 H 0.094 0.906 35 H 0.109 0.891 36 H 0.079 0.921 37 H 0.124 0.876 38 H 0.124 0.876 39 H 0.124 0.876 40 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -10.574 10.837 -0.311 15.144 hybrid contribution 1.223 0.111 0.102 1.232 sum -9.351 10.948 -0.209 14.400 Atomic orbital electron populations 1.22511 0.94193 1.05078 1.02152 1.22022 0.94186 0.91472 0.82426 1.21853 1.02426 0.92657 1.02814 1.22523 1.01876 1.03633 0.96176 1.86310 1.71641 1.23859 1.46189 1.17985 0.78984 0.80407 0.82078 1.90875 1.41723 1.70395 1.43148 1.44708 1.55422 1.12406 1.23678 1.20736 0.97574 0.78650 0.96891 1.20959 0.91228 1.07268 0.94474 1.21805 0.88434 0.80933 0.81347 1.90562 1.63545 1.45873 1.44901 1.83868 1.24250 1.53618 1.49237 1.21289 0.77618 1.26366 1.20707 0.88644 1.25343 1.00628 0.95190 0.94932 1.70004 1.36049 1.24165 1.19451 0.85633 0.80638 0.78503 0.78606 1.18921 1.20100 1.20131 1.23038 1.01397 0.92304 1.01141 1.23076 1.02121 0.98627 0.94581 0.92347 0.91350 0.89283 0.91390 0.90315 0.91599 0.89174 0.91371 0.91997 0.75508 0.90582 0.89139 0.92053 0.87603 0.87648 0.87591 0.87889 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.12 8.37 37.16 0.31 -1.81 16 2 C 0.14 1.74 1.13 -90.63 -0.10 1.64 16 3 C -0.14 -1.36 8.85 37.16 0.33 -1.04 16 4 C -0.18 -2.44 8.37 37.15 0.31 -2.13 16 5 O -0.37 -5.74 9.94 -40.33 -0.40 -6.14 16 6 C 0.65 11.32 8.06 54.06 0.44 11.76 16 7 O -0.57 -10.71 11.87 -19.27 -0.23 -10.94 16 8 N -0.70 -11.88 5.46 -65.28 -0.36 -12.23 16 9 C 0.18 3.09 5.51 -4.04 -0.02 3.07 16 10 C -0.14 -2.45 2.03 -155.66 -0.32 -2.77 16 11 C 0.43 10.39 7.05 36.01 0.25 10.64 16 12 O -0.55 -14.45 15.93 -19.05 -0.30 -14.75 16 13 O -0.20 -5.80 9.75 -20.68 -0.20 -6.00 16 14 C -0.38 -11.34 9.65 30.93 0.30 -11.04 16 15 H 0.10 2.84 6.86 -52.49 -0.36 2.48 16 16 C 0.04 1.23 5.49 -17.53 -0.10 1.14 16 17 N -0.86 -25.27 13.67 55.48 0.76 -24.51 16 18 Si 0.94 21.35 29.55 -169.99 -5.02 16.33 16 19 H -0.27 -5.92 7.11 56.52 0.40 -5.52 16 20 H -0.28 -6.02 7.11 56.52 0.40 -5.62 16 21 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 22 C -0.14 -2.04 9.93 -26.69 -0.26 -2.30 16 23 C -0.15 -2.06 9.78 -26.69 -0.26 -2.32 16 24 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 25 H 0.07 0.64 8.14 -51.92 -0.42 0.22 16 26 H 0.09 1.25 5.88 -51.93 -0.31 0.94 16 27 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 28 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 29 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 30 H 0.09 1.44 5.88 -51.93 -0.31 1.13 16 31 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 32 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 33 H 0.41 6.78 8.57 -40.82 -0.35 6.43 16 34 H 0.08 1.07 8.09 -51.93 -0.42 0.65 16 35 H 0.09 1.76 8.13 -51.93 -0.42 1.34 16 36 H 0.27 7.25 8.31 -40.82 -0.34 6.91 16 37 H 0.11 1.23 8.14 -51.93 -0.42 0.80 16 38 H 0.11 1.61 8.14 -51.93 -0.42 1.18 16 39 H 0.11 1.58 7.99 -51.93 -0.42 1.17 16 40 H 0.10 1.16 8.14 -51.93 -0.42 0.74 16 LS Contribution 342.84 15.07 5.17 5.17 Total: -1.00 -33.90 342.84 -5.65 -39.55 By element: Atomic # 1 Polarization: 14.63 SS G_CDS: -5.94 Total: 8.69 kcal Atomic # 6 Polarization: 3.96 SS G_CDS: 0.88 Total: 4.84 kcal Atomic # 7 Polarization: -37.15 SS G_CDS: 0.40 Total: -36.74 kcal Atomic # 8 Polarization: -36.69 SS G_CDS: -1.13 Total: -37.83 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.02 Total: 16.33 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -33.90 -5.65 -39.55 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000495349088.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -100.865 kcal (2) G-P(sol) polarization free energy of solvation -33.901 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.765 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.654 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.555 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.419 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds