Wall clock time and date at job start Tue Mar 31 2020 05:48:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47282 * 2 1 4 4 C 1.52993 * 109.47412 * 239.99515 * 2 1 3 5 5 O 1.45202 * 109.46734 * 119.99657 * 2 1 3 6 6 C 1.34642 * 116.99936 * 60.00028 * 5 2 1 7 7 O 1.21503 * 119.99921 * 0.02562 * 6 5 2 8 8 N 1.34778 * 119.99943 * 179.97438 * 6 5 2 9 9 C 1.46501 * 119.99966 * 180.27690 * 8 6 5 10 10 C 1.52993 * 109.46781 * 174.41812 * 9 8 6 11 11 C 1.50700 * 115.55066 * 294.72565 * 10 9 8 12 12 O 1.21211 * 119.99739 * 114.56298 * 11 10 9 13 13 O 1.34309 * 120.00620 * 294.56389 * 11 10 9 14 14 C 1.34912 * 117.00244 * 179.97438 * 13 11 10 15 15 H 1.07999 * 119.99986 * 0.02562 * 14 13 11 16 16 C 1.38762 * 119.99961 * 180.02562 * 14 13 11 17 17 N 1.31441 * 119.99947 * 359.97438 * 16 14 13 18 18 Si 1.86800 * 120.00071 * 179.97438 * 16 14 13 19 19 H 1.48510 * 109.47020 * 359.97438 * 18 16 14 20 20 H 1.48500 * 109.47169 * 119.99601 * 18 16 14 21 21 H 1.48494 * 109.47139 * 239.99811 * 18 16 14 22 22 C 1.53005 * 117.49691 * 149.06313 * 10 9 8 23 23 C 1.53003 * 117.50391 * 80.40525 * 10 9 8 24 24 H 1.08995 * 109.47300 * 300.00830 * 1 2 3 25 25 H 1.09011 * 109.46734 * 60.00008 * 1 2 3 26 26 H 1.08997 * 109.47494 * 180.02562 * 1 2 3 27 27 H 1.09003 * 109.47201 * 179.97438 * 3 2 1 28 28 H 1.08998 * 109.47106 * 299.99404 * 3 2 1 29 29 H 1.09001 * 109.47348 * 59.99688 * 3 2 1 30 30 H 1.09001 * 109.47356 * 300.00191 * 4 2 1 31 31 H 1.08999 * 109.47225 * 60.00002 * 4 2 1 32 32 H 1.08997 * 109.47503 * 180.02562 * 4 2 1 33 33 H 0.97006 * 120.00138 * 0.02562 * 8 6 5 34 34 H 1.09000 * 109.46969 * 294.41795 * 9 8 6 35 35 H 1.08996 * 109.46876 * 54.41803 * 9 8 6 36 36 H 0.96996 * 120.00057 * 180.02562 * 17 16 14 37 37 H 1.08994 * 117.49935 * 0.02562 * 22 10 9 38 38 H 1.09002 * 117.49686 * 145.01548 * 22 10 9 39 39 H 1.08997 * 117.49896 * 214.97409 * 23 10 9 40 40 H 1.09000 * 117.49207 * 359.97271 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2491 5 8 2.0139 -0.6844 1.1856 6 6 1.6521 -1.9723 1.3385 7 8 0.9515 -2.5096 0.5037 8 7 2.0678 -2.6656 2.4168 9 6 1.6791 -4.0687 2.5801 10 6 2.3899 -4.6560 3.8009 11 6 3.8903 -4.7501 3.6966 12 8 4.5916 -4.0858 4.4288 13 8 4.4506 -5.5701 2.7923 14 6 5.7986 -5.6065 2.7508 15 1 6.3765 -4.9935 3.4266 16 6 6.4426 -6.4317 1.8399 17 7 5.7394 -7.1782 1.0178 18 14 8.3091 -6.4817 1.7819 19 1 8.8610 -5.5546 2.8024 20 1 8.7762 -7.8630 2.0631 21 1 8.7737 -6.0667 0.4340 22 6 1.6654 -5.7567 4.5785 23 6 1.7950 -4.3542 5.1779 24 1 -0.3633 0.5139 0.8899 25 1 -0.3633 0.5139 -0.8901 26 1 -0.3634 -1.0276 0.0005 27 1 3.1300 1.4425 0.0005 28 1 1.6768 1.9563 -0.8900 29 1 1.6767 1.9564 0.8900 30 1 1.6767 -1.7490 -1.2491 31 1 1.6767 -0.2076 -2.1391 32 1 3.1300 -0.7217 -1.2489 33 1 2.6274 -2.2367 3.0831 34 1 0.6003 -4.1327 2.7220 35 1 1.9623 -4.6301 1.6898 36 1 6.1895 -7.7553 0.3813 37 1 0.6827 -6.0627 4.2200 38 1 2.2742 -6.5487 5.0149 39 1 2.4889 -4.2241 6.0083 40 1 0.8975 -3.7368 5.2139 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000495349088.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:48:56 Heat of formation + Delta-G solvation = -163.731144 kcal Electronic energy + Delta-G solvation = -23241.977927 eV Core-core repulsion = 19636.347567 eV Total energy + Delta-G solvation = -3605.630360 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 285.145 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.89822 -41.27413 -39.06362 -38.01908 -36.91937 -35.57596 -34.62629 -34.32495 -28.80799 -28.36101 -28.28529 -27.69880 -24.86176 -23.59005 -23.09661 -21.28316 -20.69888 -19.89332 -19.33661 -18.33539 -17.58917 -17.39832 -17.02157 -16.66826 -16.27572 -16.07159 -15.62507 -15.49180 -15.19412 -14.80036 -14.41463 -14.23013 -13.78798 -13.39742 -13.29380 -13.14836 -13.09495 -12.90274 -12.86064 -12.49910 -12.47850 -12.43711 -12.34546 -12.23555 -12.05096 -11.68456 -11.42000 -11.38688 -11.12662 -10.94902 -10.73299 -10.27327 -8.57434 -6.37600 1.09855 1.23678 1.30777 1.49371 1.55906 1.72832 2.04972 2.52311 2.76447 2.94221 3.16713 3.41379 3.74522 3.76004 3.80631 3.91542 3.95361 4.35632 4.45598 4.56875 4.62316 4.63040 4.69879 4.76013 4.76518 4.84823 4.88109 4.92167 4.93676 5.03725 5.15806 5.17943 5.20978 5.29393 5.36174 5.53125 5.79089 6.31102 6.61242 6.87595 7.27191 7.74648 8.63287 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.014566 B = 0.004877 C = 0.004059 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1921.876153 B = 5740.336793 C = 6897.250158 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.121 3.879 3 C -0.135 4.135 4 C -0.183 4.183 5 O -0.372 6.372 6 C 0.649 3.351 7 O -0.589 6.589 8 N -0.705 5.705 9 C 0.194 3.806 10 C -0.167 4.167 11 C 0.430 3.570 12 O -0.577 6.577 13 O -0.237 6.237 14 C -0.422 4.422 15 H 0.081 0.919 16 C -0.003 4.003 17 N -0.900 5.900 18 Si 1.015 2.985 19 H -0.264 1.264 20 H -0.257 1.257 21 H -0.262 1.262 22 C -0.126 4.126 23 C -0.117 4.117 24 H 0.067 0.933 25 H 0.094 0.906 26 H 0.062 0.938 27 H 0.061 0.939 28 H 0.107 0.893 29 H 0.073 0.927 30 H 0.057 0.943 31 H 0.098 0.902 32 H 0.051 0.949 33 H 0.410 0.590 34 H 0.114 0.886 35 H 0.054 0.946 36 H 0.279 0.721 37 H 0.145 0.855 38 H 0.092 0.908 39 H 0.095 0.905 40 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.419 12.231 0.411 16.737 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.085 3.915 3 C -0.192 4.192 4 C -0.240 4.240 5 O -0.287 6.287 6 C 0.402 3.598 7 O -0.480 6.480 8 N -0.363 5.363 9 C 0.071 3.929 10 C -0.169 4.169 11 C 0.277 3.723 12 O -0.475 6.475 13 O -0.145 6.145 14 C -0.498 4.498 15 H 0.099 0.901 16 C -0.203 4.203 17 N -0.537 5.537 18 Si 0.834 3.166 19 H -0.188 1.188 20 H -0.181 1.181 21 H -0.186 1.186 22 C -0.163 4.163 23 C -0.153 4.153 24 H 0.086 0.914 25 H 0.113 0.887 26 H 0.080 0.920 27 H 0.081 0.919 28 H 0.126 0.874 29 H 0.092 0.908 30 H 0.076 0.924 31 H 0.116 0.884 32 H 0.070 0.930 33 H 0.245 0.755 34 H 0.132 0.868 35 H 0.072 0.928 36 H 0.088 0.912 37 H 0.163 0.837 38 H 0.111 0.889 39 H 0.114 0.886 40 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -11.564 12.034 -0.053 16.690 hybrid contribution 1.452 -0.192 0.056 1.465 sum -10.112 11.842 0.003 15.572 Atomic orbital electron populations 1.22448 0.93092 1.03825 1.03923 1.22498 0.95283 0.92672 0.81078 1.21890 1.02109 0.90506 1.04663 1.22500 1.01175 1.02282 0.98054 1.86327 1.71754 1.22973 1.47649 1.18125 0.78830 0.80960 0.81862 1.90870 1.42549 1.70955 1.43638 1.44780 1.55406 1.12462 1.23695 1.20660 0.99272 0.78050 0.94882 1.20989 0.86955 1.11692 0.97271 1.23103 0.91209 0.78708 0.79235 1.90518 1.65255 1.46297 1.45403 1.83901 1.23937 1.55471 1.51203 1.21457 0.78498 1.27822 1.21977 0.90137 1.26535 1.06160 0.93939 0.93707 1.70089 1.38568 1.24895 1.20187 0.84604 0.73510 0.79353 0.79126 1.18752 1.18137 1.18634 1.23264 1.02114 0.91921 0.99038 1.23249 1.02365 0.98638 0.91097 0.91434 0.88698 0.91953 0.91948 0.87424 0.90758 0.92364 0.88355 0.93022 0.75479 0.86829 0.92753 0.91207 0.83744 0.88921 0.88641 0.83851 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.79 8.37 71.98 0.60 -3.19 16 2 C 0.12 2.96 1.13 -10.80 -0.01 2.95 16 3 C -0.13 -2.31 8.85 71.98 0.64 -1.67 16 4 C -0.18 -4.78 8.37 71.98 0.60 -4.17 16 5 O -0.37 -11.67 9.94 -55.51 -0.55 -12.22 16 6 C 0.65 22.77 8.06 129.79 1.05 23.82 16 7 O -0.59 -22.50 11.87 19.83 0.24 -22.27 16 8 N -0.70 -23.92 5.46 -590.86 -3.23 -27.15 16 9 C 0.19 6.45 5.51 86.38 0.48 6.93 16 10 C -0.17 -5.88 2.03 -52.93 -0.11 -5.99 16 11 C 0.43 21.55 7.05 71.24 0.50 22.05 16 12 O -0.58 -31.28 15.93 20.77 0.33 -30.95 16 13 O -0.24 -14.20 9.75 14.97 0.15 -14.06 16 14 C -0.42 -26.04 9.65 67.95 0.66 -25.39 16 15 H 0.08 5.05 6.86 -2.91 -0.02 5.03 16 16 C 0.00 -0.17 5.49 84.88 0.47 0.30 16 17 N -0.90 -54.26 13.67 21.63 0.30 -53.96 16 18 Si 1.02 44.21 29.55 68.60 2.03 46.24 16 19 H -0.26 -11.26 7.11 99.48 0.71 -10.56 16 20 H -0.26 -10.37 7.11 99.48 0.71 -9.67 16 21 H -0.26 -10.74 7.11 99.48 0.71 -10.03 16 22 C -0.13 -3.37 9.93 30.62 0.30 -3.07 16 23 C -0.12 -2.97 9.78 30.62 0.30 -2.67 16 24 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 25 H 0.09 1.51 8.14 -2.38 -0.02 1.49 16 26 H 0.06 1.71 5.88 -2.39 -0.01 1.70 16 27 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 28 H 0.11 1.23 8.14 -2.39 -0.02 1.21 16 29 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 30 H 0.06 1.91 5.88 -2.39 -0.01 1.89 16 31 H 0.10 1.90 8.14 -2.39 -0.02 1.88 16 32 H 0.05 1.41 8.14 -2.39 -0.02 1.39 16 33 H 0.41 13.68 8.57 -92.70 -0.79 12.89 16 34 H 0.11 2.94 8.09 -2.39 -0.02 2.92 16 35 H 0.05 2.20 8.13 -2.39 -0.02 2.18 16 36 H 0.28 15.20 8.31 -92.71 -0.77 14.43 16 37 H 0.14 2.77 8.14 -2.39 -0.02 2.76 16 38 H 0.09 2.74 8.14 -2.39 -0.02 2.72 16 39 H 0.10 2.69 7.99 -2.39 -0.02 2.67 16 40 H 0.14 2.55 8.14 -2.39 -0.02 2.53 16 Total: -1.00 -78.50 342.84 4.98 -73.51 By element: Atomic # 1 Polarization: 30.72 SS G_CDS: 0.26 Total: 30.98 kcal Atomic # 6 Polarization: 4.41 SS G_CDS: 5.47 Total: 9.88 kcal Atomic # 7 Polarization: -78.18 SS G_CDS: -2.93 Total: -81.11 kcal Atomic # 8 Polarization: -79.66 SS G_CDS: 0.16 Total: -79.49 kcal Atomic # 14 Polarization: 44.21 SS G_CDS: 2.03 Total: 46.24 kcal Total: -78.50 4.98 -73.51 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000495349088.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -90.218 kcal (2) G-P(sol) polarization free energy of solvation -78.495 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -168.713 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.982 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.513 kcal (6) G-S(sol) free energy of system = (1) + (5) -163.731 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds