Wall clock time and date at job start Tue Mar 31 2020 06:06:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.45200 * 109.47169 * 2 1 4 4 C 1.34636 * 117.00101 * 180.02562 * 3 2 1 5 5 O 1.21514 * 120.00025 * 359.97438 * 4 3 2 6 6 N 1.34782 * 120.00629 * 180.02562 * 4 3 2 7 7 C 1.46493 * 120.00199 * 179.97438 * 6 4 3 8 8 C 1.53003 * 109.47024 * 179.97438 * 7 6 4 9 9 C 1.50698 * 109.47524 * 180.02562 * 8 7 6 10 10 O 1.20828 * 119.99534 * 0.02562 * 9 8 7 11 11 O 1.34230 * 120.00276 * 179.97438 * 9 8 7 12 12 C 1.45198 * 116.99995 * 184.35054 * 11 9 8 13 13 C 1.50697 * 112.85075 * 294.78240 * 12 11 9 14 14 H 1.07996 * 120.00460 * 124.37004 * 13 12 11 15 15 C 1.37877 * 120.00034 * 304.64375 * 13 12 11 16 16 N 1.31514 * 120.00456 * 185.67263 * 15 13 12 17 17 Si 1.86803 * 119.99826 * 5.66997 * 15 13 12 18 18 H 1.48500 * 109.47122 * 84.88081 * 17 15 13 19 19 H 1.48505 * 109.47211 * 204.88076 * 17 15 13 20 20 H 1.48505 * 109.46971 * 324.88091 * 17 15 13 21 21 C 1.53778 * 113.61233 * 65.97593 * 12 11 9 22 22 C 1.53955 * 87.01979 * 89.23077 * 21 12 11 23 23 C 1.53777 * 87.11072 * 25.36097 * 22 21 12 24 24 H 1.09000 * 109.46747 * 300.00028 * 1 2 3 25 25 H 1.08996 * 109.47147 * 59.99535 * 1 2 3 26 26 H 1.08996 * 109.47049 * 180.02562 * 1 2 3 27 27 H 1.09008 * 109.46985 * 240.00125 * 2 1 3 28 28 H 1.09004 * 109.47402 * 120.00202 * 2 1 3 29 29 H 0.97003 * 119.98940 * 359.97438 * 6 4 3 30 30 H 1.08997 * 109.47204 * 60.00438 * 7 6 4 31 31 H 1.08993 * 109.47531 * 299.99963 * 7 6 4 32 32 H 1.09000 * 109.47179 * 60.00054 * 8 7 6 33 33 H 1.09007 * 109.47129 * 300.00566 * 8 7 6 34 34 H 0.97003 * 120.00086 * 179.97438 * 16 15 13 35 35 H 1.09002 * 113.61715 * 203.74894 * 21 12 11 36 36 H 1.09002 * 113.62053 * 334.64937 * 21 12 11 37 37 H 1.09002 * 113.53645 * 270.80796 * 22 21 12 38 38 H 1.08995 * 113.74545 * 139.94809 * 22 21 12 39 39 H 1.09000 * 113.61296 * 220.09453 * 23 22 21 40 40 H 1.08998 * 113.69248 * 89.20167 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3488 1.5454 -0.0005 5 8 4.0890 0.5817 -0.0005 6 7 3.8640 2.7908 0.0000 7 6 5.3164 2.9826 -0.0001 8 6 5.6330 4.4795 -0.0001 9 6 7.1270 4.6770 -0.0008 10 8 7.8630 3.7188 -0.0016 11 8 7.6401 5.9174 -0.0014 12 6 9.0841 6.0334 -0.1002 13 6 9.8002 5.4641 1.0974 14 1 10.5525 4.7008 0.9642 15 6 9.4909 5.9136 2.3636 16 7 10.1907 5.5001 3.3974 17 14 8.0776 7.1099 2.6106 18 1 6.8033 6.3552 2.7190 19 1 8.2996 7.8879 3.8560 20 1 8.0066 8.0379 1.4533 21 6 9.6505 5.5479 -1.4448 22 6 9.4487 6.9855 -1.9574 23 6 9.5636 7.4407 -0.4930 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3633 -1.0276 0.0005 27 1 1.8933 -0.5139 -0.8901 28 1 1.8934 -0.5139 0.8900 29 1 3.2731 3.5600 0.0003 30 1 5.7438 2.5213 -0.8903 31 1 5.7440 2.5205 0.8896 32 1 5.2056 4.9414 0.8899 33 1 5.2054 4.9414 -0.8901 34 1 9.9733 5.8167 4.2882 35 1 10.6964 5.2451 -1.3944 36 1 9.0198 4.8126 -1.9445 37 1 8.4643 7.1583 -2.3925 38 1 10.2601 7.3435 -2.5909 39 1 8.8626 8.2313 -0.2253 40 1 10.5851 7.6570 -0.1805 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000495733097.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:06:11 Heat of formation + Delta-G solvation = -143.378104 kcal Electronic energy + Delta-G solvation = -22871.167392 eV Core-core repulsion = 19266.419607 eV Total energy + Delta-G solvation = -3604.747786 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 285.145 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.52302 -39.86727 -37.67387 -36.93301 -35.20619 -34.47659 -32.39782 -32.10294 -30.73009 -27.02991 -24.99217 -24.90497 -23.26071 -22.28446 -21.37587 -20.55552 -18.86656 -18.32144 -17.41547 -16.89575 -16.85402 -16.02992 -15.85703 -15.22110 -14.97409 -14.62050 -14.44639 -14.23632 -13.84064 -13.50876 -13.06272 -12.95643 -12.61672 -12.26196 -11.99144 -11.90316 -11.84969 -11.57312 -11.49485 -11.35713 -11.06715 -10.70329 -10.69583 -10.41440 -10.32697 -10.02731 -9.94829 -9.57667 -9.28956 -8.99363 -8.62291 -8.60299 -6.17870 -4.22968 1.97313 2.75705 3.04534 3.28143 3.31605 3.41356 3.61559 4.14341 4.39267 4.68052 4.70635 4.73590 5.03218 5.08262 5.10571 5.28085 5.29040 5.44380 5.48276 5.49078 5.60461 5.64567 5.83407 5.86821 5.91940 6.13609 6.19913 6.24495 6.28341 6.58237 6.61859 6.74117 6.95596 7.18112 7.27968 7.39447 7.70862 8.24119 8.36711 8.75850 8.90410 9.43201 10.92878 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.023605 B = 0.003749 C = 0.003534 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1185.897494 B = 7467.221140 C = 7920.820720 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.082 3.918 3 O -0.374 6.374 4 C 0.647 3.353 5 O -0.568 6.568 6 N -0.708 5.708 7 C 0.148 3.852 8 C -0.134 4.134 9 C 0.462 3.538 10 O -0.481 6.481 11 O -0.360 6.360 12 C 0.193 3.807 13 C -0.511 4.511 14 H 0.084 0.916 15 C 0.079 3.921 16 N -0.884 5.884 17 Si 0.885 3.115 18 H -0.282 1.282 19 H -0.300 1.300 20 H -0.249 1.249 21 C -0.140 4.140 22 C -0.148 4.148 23 C -0.122 4.122 24 H 0.066 0.934 25 H 0.066 0.934 26 H 0.081 0.919 27 H 0.070 0.930 28 H 0.071 0.929 29 H 0.406 0.594 30 H 0.083 0.917 31 H 0.085 0.915 32 H 0.105 0.895 33 H 0.105 0.895 34 H 0.266 0.734 35 H 0.086 0.914 36 H 0.056 0.944 37 H 0.070 0.930 38 H 0.058 0.942 39 H 0.063 0.937 40 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.201 -2.190 -8.440 19.284 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.007 3.993 3 O -0.289 6.289 4 C 0.399 3.601 5 O -0.456 6.456 6 N -0.368 5.368 7 C 0.026 3.974 8 C -0.173 4.173 9 C 0.302 3.698 10 O -0.367 6.367 11 O -0.279 6.279 12 C 0.159 3.841 13 C -0.548 4.548 14 H 0.102 0.898 15 C -0.126 4.126 16 N -0.521 5.521 17 Si 0.714 3.286 18 H -0.209 1.209 19 H -0.227 1.227 20 H -0.173 1.173 21 C -0.177 4.177 22 C -0.185 4.185 23 C -0.159 4.159 24 H 0.085 0.915 25 H 0.085 0.915 26 H 0.100 0.900 27 H 0.089 0.911 28 H 0.089 0.911 29 H 0.241 0.759 30 H 0.102 0.898 31 H 0.104 0.896 32 H 0.123 0.877 33 H 0.124 0.876 34 H 0.076 0.924 35 H 0.105 0.895 36 H 0.075 0.925 37 H 0.089 0.911 38 H 0.077 0.923 39 H 0.081 0.919 40 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -16.561 -3.003 -8.246 18.743 hybrid contribution -0.939 0.753 0.433 1.279 sum -17.501 -2.250 -7.813 19.297 Atomic orbital electron populations 1.21828 0.92617 1.03029 1.03498 1.22948 0.94693 0.78744 1.02929 1.86217 1.22206 1.33275 1.87197 1.18026 0.81043 0.84388 0.76613 1.91037 1.59736 1.39642 1.55160 1.44625 1.08406 1.05400 1.78382 1.21111 0.76582 0.94715 1.04966 1.21506 0.92943 0.96923 1.05899 1.22498 0.90151 0.82711 0.74424 1.90677 1.61368 1.41571 1.43073 1.86309 1.29244 1.30192 1.82115 1.21259 0.73623 0.94280 0.94975 1.21054 1.21237 1.23578 0.88882 0.89775 1.25045 0.95935 0.95727 0.95884 1.69930 1.38971 1.43867 0.99302 0.86779 0.82548 0.81819 0.77443 1.20876 1.22732 1.17331 1.23317 1.01847 0.95204 0.97354 1.22971 1.00579 0.97991 0.96983 1.23272 1.01708 0.96740 0.94193 0.91473 0.91502 0.90021 0.91125 0.91085 0.75907 0.89845 0.89640 0.87707 0.87642 0.92433 0.89503 0.92542 0.91147 0.92321 0.91852 0.88630 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.94 10.29 37.16 0.38 -0.56 16 2 C 0.08 0.76 6.19 37.16 0.23 0.99 16 3 O -0.37 -4.42 10.27 -40.31 -0.41 -4.84 16 4 C 0.65 9.23 8.75 54.06 0.47 9.70 16 5 O -0.57 -10.16 16.13 -19.28 -0.31 -10.47 16 6 N -0.71 -8.65 5.56 -65.28 -0.36 -9.01 16 7 C 0.15 2.17 4.96 -4.04 -0.02 2.15 16 8 C -0.13 -1.91 5.93 -27.88 -0.17 -2.08 16 9 C 0.46 9.49 7.31 36.00 0.26 9.75 16 10 O -0.48 -11.49 14.11 -18.75 -0.26 -11.75 16 11 O -0.36 -7.92 7.27 -39.26 -0.29 -8.20 16 12 C 0.19 4.48 0.11 -90.96 -0.01 4.47 16 13 C -0.51 -14.31 7.92 -34.44 -0.27 -14.58 16 14 H 0.08 2.62 8.06 -52.49 -0.42 2.20 16 15 C 0.08 2.26 5.47 -17.82 -0.10 2.16 16 16 N -0.88 -26.92 13.96 55.43 0.77 -26.15 16 17 Si 0.89 21.72 25.54 -169.99 -4.34 17.37 16 18 H -0.28 -6.78 7.11 56.52 0.40 -6.37 16 19 H -0.30 -7.37 7.11 56.52 0.40 -6.97 16 20 H -0.25 -5.69 5.15 56.52 0.29 -5.40 16 21 C -0.14 -2.85 6.91 -25.83 -0.18 -3.03 16 22 C -0.15 -2.56 8.03 -25.83 -0.21 -2.77 16 23 C -0.12 -2.46 6.50 -25.92 -0.17 -2.63 16 24 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 25 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 26 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 27 H 0.07 0.66 8.14 -51.92 -0.42 0.23 16 28 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 29 H 0.41 3.64 8.58 -40.82 -0.35 3.29 16 30 H 0.08 1.29 8.10 -51.93 -0.42 0.87 16 31 H 0.09 1.46 8.10 -51.93 -0.42 1.04 16 32 H 0.10 1.38 8.14 -51.93 -0.42 0.96 16 33 H 0.11 1.14 8.14 -51.93 -0.42 0.72 16 34 H 0.27 7.60 8.31 -40.82 -0.34 7.26 16 35 H 0.09 1.78 8.09 -51.93 -0.42 1.36 16 36 H 0.06 1.14 7.35 -51.93 -0.38 0.76 16 37 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 38 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 39 H 0.06 1.25 6.60 -51.93 -0.34 0.91 16 40 H 0.10 1.93 8.09 -51.93 -0.42 1.51 16 LS Contribution 335.13 15.07 5.05 5.05 Total: -1.00 -34.59 335.13 -6.16 -40.74 By element: Atomic # 1 Polarization: 9.91 SS G_CDS: -6.23 Total: 3.68 kcal Atomic # 6 Polarization: 3.35 SS G_CDS: 0.23 Total: 3.58 kcal Atomic # 7 Polarization: -35.57 SS G_CDS: 0.41 Total: -35.16 kcal Atomic # 8 Polarization: -33.99 SS G_CDS: -1.28 Total: -35.26 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -4.34 Total: 17.37 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -34.59 -6.16 -40.74 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000495733097.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -102.636 kcal (2) G-P(sol) polarization free energy of solvation -34.587 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -137.223 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.155 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.742 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.378 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds