Wall clock time and date at job start Tue Mar 31 2020 06:06:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.45200 * 109.47169 * 2 1 4 4 C 1.34636 * 117.00101 * 180.02562 * 3 2 1 5 5 O 1.21514 * 120.00025 * 359.97438 * 4 3 2 6 6 N 1.34782 * 120.00629 * 180.02562 * 4 3 2 7 7 C 1.46493 * 120.00199 * 179.97438 * 6 4 3 8 8 C 1.53003 * 109.47024 * 179.97438 * 7 6 4 9 9 C 1.50698 * 109.47524 * 180.02562 * 8 7 6 10 10 O 1.20828 * 119.99534 * 0.02562 * 9 8 7 11 11 O 1.34230 * 120.00276 * 179.97438 * 9 8 7 12 12 C 1.45198 * 116.99995 * 184.35054 * 11 9 8 13 13 C 1.50697 * 112.85075 * 294.78240 * 12 11 9 14 14 H 1.07996 * 120.00460 * 124.37004 * 13 12 11 15 15 C 1.37877 * 120.00034 * 304.64375 * 13 12 11 16 16 N 1.31514 * 120.00456 * 185.67263 * 15 13 12 17 17 Si 1.86803 * 119.99826 * 5.66997 * 15 13 12 18 18 H 1.48500 * 109.47122 * 84.88081 * 17 15 13 19 19 H 1.48505 * 109.47211 * 204.88076 * 17 15 13 20 20 H 1.48505 * 109.46971 * 324.88091 * 17 15 13 21 21 C 1.53778 * 113.61233 * 65.97593 * 12 11 9 22 22 C 1.53955 * 87.01979 * 89.23077 * 21 12 11 23 23 C 1.53777 * 87.11072 * 25.36097 * 22 21 12 24 24 H 1.09000 * 109.46747 * 300.00028 * 1 2 3 25 25 H 1.08996 * 109.47147 * 59.99535 * 1 2 3 26 26 H 1.08996 * 109.47049 * 180.02562 * 1 2 3 27 27 H 1.09008 * 109.46985 * 240.00125 * 2 1 3 28 28 H 1.09004 * 109.47402 * 120.00202 * 2 1 3 29 29 H 0.97003 * 119.98940 * 359.97438 * 6 4 3 30 30 H 1.08997 * 109.47204 * 60.00438 * 7 6 4 31 31 H 1.08993 * 109.47531 * 299.99963 * 7 6 4 32 32 H 1.09000 * 109.47179 * 60.00054 * 8 7 6 33 33 H 1.09007 * 109.47129 * 300.00566 * 8 7 6 34 34 H 0.97003 * 120.00086 * 179.97438 * 16 15 13 35 35 H 1.09002 * 113.61715 * 203.74894 * 21 12 11 36 36 H 1.09002 * 113.62053 * 334.64937 * 21 12 11 37 37 H 1.09002 * 113.53645 * 270.80796 * 22 21 12 38 38 H 1.08995 * 113.74545 * 139.94809 * 22 21 12 39 39 H 1.09000 * 113.61296 * 220.09453 * 23 22 21 40 40 H 1.08998 * 113.69248 * 89.20167 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3488 1.5454 -0.0005 5 8 4.0890 0.5817 -0.0005 6 7 3.8640 2.7908 0.0000 7 6 5.3164 2.9826 -0.0001 8 6 5.6330 4.4795 -0.0001 9 6 7.1270 4.6770 -0.0008 10 8 7.8630 3.7188 -0.0016 11 8 7.6401 5.9174 -0.0014 12 6 9.0841 6.0334 -0.1002 13 6 9.8002 5.4641 1.0974 14 1 10.5525 4.7008 0.9642 15 6 9.4909 5.9136 2.3636 16 7 10.1907 5.5001 3.3974 17 14 8.0776 7.1099 2.6106 18 1 6.8033 6.3552 2.7190 19 1 8.2996 7.8879 3.8560 20 1 8.0066 8.0379 1.4533 21 6 9.6505 5.5479 -1.4448 22 6 9.4487 6.9855 -1.9574 23 6 9.5636 7.4407 -0.4930 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3633 -1.0276 0.0005 27 1 1.8933 -0.5139 -0.8901 28 1 1.8934 -0.5139 0.8900 29 1 3.2731 3.5600 0.0003 30 1 5.7438 2.5213 -0.8903 31 1 5.7440 2.5205 0.8896 32 1 5.2056 4.9414 0.8899 33 1 5.2054 4.9414 -0.8901 34 1 9.9733 5.8167 4.2882 35 1 10.6964 5.2451 -1.3944 36 1 9.0198 4.8126 -1.9445 37 1 8.4643 7.1583 -2.3925 38 1 10.2601 7.3435 -2.5909 39 1 8.8626 8.2313 -0.2253 40 1 10.5851 7.6570 -0.1805 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000495733097.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:06:10 Heat of formation + Delta-G solvation = -168.732086 kcal Electronic energy + Delta-G solvation = -22872.266824 eV Core-core repulsion = 19266.419607 eV Total energy + Delta-G solvation = -3605.847217 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 285.145 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -41.70849 -41.44444 -39.20572 -38.06041 -36.46699 -36.14832 -34.55684 -32.93933 -31.79366 -28.98758 -26.59794 -26.22255 -24.28596 -23.77441 -22.44681 -22.01728 -20.13390 -19.88185 -19.27041 -18.14782 -17.92763 -17.50835 -17.36448 -16.86470 -16.59283 -15.90247 -15.79127 -15.51099 -14.99118 -14.80411 -14.71172 -14.44017 -13.70633 -13.54903 -13.38627 -13.19665 -13.06009 -12.98449 -12.93503 -12.61403 -12.53437 -12.15212 -11.98432 -11.91435 -11.85606 -11.65157 -11.56140 -11.25731 -10.99408 -10.58758 -10.44144 -10.39351 -8.36784 -6.47000 0.92603 1.33015 1.34853 1.43710 1.59959 1.63090 2.04910 2.34928 3.00180 3.18614 3.49857 3.78985 3.88079 3.95046 4.02325 4.05215 4.09873 4.21121 4.34534 4.36825 4.54718 4.62273 4.69919 4.85126 4.86042 4.93691 4.98191 5.06124 5.10051 5.13089 5.16389 5.31609 5.42425 5.53848 5.59507 5.84131 6.28028 6.31727 6.58893 7.07002 7.20504 7.25120 8.78608 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.023605 B = 0.003749 C = 0.003534 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1185.897494 B = 7467.221140 C = 7920.820720 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.071 3.929 3 O -0.367 6.367 4 C 0.645 3.355 5 O -0.611 6.611 6 N -0.689 5.689 7 C 0.157 3.843 8 C -0.117 4.117 9 C 0.450 3.550 10 O -0.527 6.527 11 O -0.354 6.354 12 C 0.176 3.824 13 C -0.516 4.516 14 H 0.026 0.974 15 C 0.019 3.981 16 N -0.941 5.941 17 Si 0.943 3.057 18 H -0.270 1.270 19 H -0.302 1.302 20 H -0.214 1.214 21 C -0.145 4.145 22 C -0.118 4.118 23 C -0.121 4.121 24 H 0.069 0.931 25 H 0.072 0.928 26 H 0.103 0.897 27 H 0.068 0.932 28 H 0.064 0.936 29 H 0.426 0.574 30 H 0.071 0.929 31 H 0.053 0.947 32 H 0.127 0.873 33 H 0.155 0.845 34 H 0.267 0.733 35 H 0.071 0.929 36 H 0.054 0.946 37 H 0.095 0.905 38 H 0.088 0.912 39 H 0.077 0.923 40 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.724 0.149 -10.277 23.133 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.003 4.003 3 O -0.281 6.281 4 C 0.398 3.602 5 O -0.502 6.502 6 N -0.351 5.351 7 C 0.034 3.966 8 C -0.155 4.155 9 C 0.293 3.707 10 O -0.415 6.415 11 O -0.272 6.272 12 C 0.141 3.859 13 C -0.554 4.554 14 H 0.045 0.955 15 C -0.180 4.180 16 N -0.580 5.580 17 Si 0.767 3.233 18 H -0.196 1.196 19 H -0.230 1.230 20 H -0.137 1.137 21 C -0.182 4.182 22 C -0.155 4.155 23 C -0.158 4.158 24 H 0.088 0.912 25 H 0.091 0.909 26 H 0.121 0.879 27 H 0.087 0.913 28 H 0.083 0.917 29 H 0.265 0.735 30 H 0.090 0.910 31 H 0.072 0.928 32 H 0.145 0.855 33 H 0.173 0.827 34 H 0.075 0.925 35 H 0.090 0.910 36 H 0.073 0.927 37 H 0.114 0.886 38 H 0.106 0.894 39 H 0.095 0.905 40 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -20.137 -0.632 -10.115 22.543 hybrid contribution 0.196 -0.149 0.986 1.016 sum -19.941 -0.781 -9.129 21.945 Atomic orbital electron populations 1.21841 0.89740 1.04583 1.03902 1.23283 0.96839 0.77612 1.02609 1.86248 1.20389 1.34741 1.86677 1.18229 0.81607 0.84317 0.76035 1.91015 1.60921 1.41194 1.57104 1.44322 1.07625 1.05634 1.77481 1.20802 0.77765 0.95060 1.02972 1.21525 0.88011 0.96635 1.09281 1.23749 0.92604 0.81637 0.72721 1.90680 1.63132 1.42687 1.45007 1.86274 1.27711 1.30913 1.82291 1.21322 0.74124 0.96690 0.93786 1.21198 1.20715 1.22070 0.91383 0.95535 1.25993 0.98784 0.97930 0.95316 1.70095 1.41552 1.46407 0.99951 0.85854 0.79009 0.80035 0.78378 1.19554 1.22994 1.13691 1.23296 1.00783 0.97791 0.96362 1.22865 1.03081 0.93996 0.95529 1.23244 1.01457 0.94841 0.96300 0.91179 0.90905 0.87888 0.91336 0.91717 0.73526 0.91042 0.92846 0.85462 0.82716 0.92464 0.91014 0.92688 0.88648 0.89384 0.90466 0.89402 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.43 10.29 71.98 0.74 -0.69 16 2 C 0.07 1.24 6.19 71.98 0.45 1.69 16 3 O -0.37 -8.06 10.27 -55.46 -0.57 -8.63 16 4 C 0.65 17.75 8.75 129.79 1.14 18.89 16 5 O -0.61 -22.11 16.13 19.80 0.32 -21.80 16 6 N -0.69 -15.29 5.56 -590.86 -3.29 -18.58 16 7 C 0.16 4.41 4.96 86.38 0.43 4.84 16 8 C -0.12 -2.93 5.93 29.85 0.18 -2.75 16 9 C 0.45 17.80 7.31 71.24 0.52 18.32 16 10 O -0.53 -25.73 14.11 21.96 0.31 -25.42 16 11 O -0.35 -14.63 7.27 -51.42 -0.37 -15.00 16 12 C 0.18 8.02 0.11 -11.02 0.00 8.02 16 13 C -0.52 -30.10 7.92 25.60 0.20 -29.89 16 14 H 0.03 1.79 8.06 -2.91 -0.02 1.76 16 15 C 0.02 1.10 5.47 84.65 0.46 1.56 16 16 N -0.94 -60.04 13.96 21.45 0.30 -59.74 16 17 Si 0.94 43.89 25.54 68.60 1.75 45.64 16 18 H -0.27 -11.92 7.11 99.48 0.71 -11.22 16 19 H -0.30 -14.11 7.11 99.48 0.71 -13.40 16 20 H -0.21 -8.71 5.15 99.48 0.51 -8.20 16 21 C -0.14 -5.80 6.91 31.18 0.22 -5.59 16 22 C -0.12 -3.62 8.03 31.18 0.25 -3.37 16 23 C -0.12 -4.57 6.50 31.12 0.20 -4.37 16 24 H 0.07 0.68 8.14 -2.39 -0.02 0.66 16 25 H 0.07 0.66 8.14 -2.39 -0.02 0.64 16 26 H 0.10 0.61 8.14 -2.39 -0.02 0.59 16 27 H 0.07 1.23 8.14 -2.38 -0.02 1.21 16 28 H 0.06 1.21 8.14 -2.39 -0.02 1.20 16 29 H 0.43 6.01 8.58 -92.71 -0.80 5.21 16 30 H 0.07 2.19 8.10 -2.39 -0.02 2.17 16 31 H 0.05 1.85 8.10 -2.39 -0.02 1.83 16 32 H 0.13 2.75 8.14 -2.39 -0.02 2.73 16 33 H 0.16 2.44 8.14 -2.38 -0.02 2.42 16 34 H 0.27 15.90 8.31 -92.71 -0.77 15.13 16 35 H 0.07 3.03 8.09 -2.39 -0.02 3.01 16 36 H 0.05 2.18 7.35 -2.39 -0.02 2.17 16 37 H 0.10 2.53 8.14 -2.39 -0.02 2.51 16 38 H 0.09 2.25 8.14 -2.39 -0.02 2.23 16 39 H 0.08 2.70 6.60 -2.39 -0.02 2.69 16 40 H 0.09 3.42 8.09 -2.39 -0.02 3.40 16 Total: -1.00 -81.39 335.13 3.28 -78.11 By element: Atomic # 1 Polarization: 18.70 SS G_CDS: 0.05 Total: 18.76 kcal Atomic # 6 Polarization: 1.88 SS G_CDS: 4.78 Total: 6.66 kcal Atomic # 7 Polarization: -75.33 SS G_CDS: -2.99 Total: -78.32 kcal Atomic # 8 Polarization: -70.53 SS G_CDS: -0.31 Total: -70.85 kcal Atomic # 14 Polarization: 43.89 SS G_CDS: 1.75 Total: 45.64 kcal Total: -81.39 3.28 -78.11 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000495733097.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -90.623 kcal (2) G-P(sol) polarization free energy of solvation -81.393 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -172.017 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.285 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.109 kcal (6) G-S(sol) free energy of system = (1) + (5) -168.732 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds