Wall clock time and date at job start Tue Mar 31 2020 05:48:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52999 * 109.47379 * 2 1 4 4 C 1.53006 * 109.47027 * 239.99867 * 2 1 3 5 5 O 1.45206 * 109.46749 * 120.00124 * 2 1 3 6 6 C 1.34638 * 117.00029 * 60.00278 * 5 2 1 7 7 O 1.21510 * 119.99843 * 359.97438 * 6 5 2 8 8 N 1.34773 * 120.00036 * 180.02562 * 6 5 2 9 9 C 1.46497 * 120.00060 * 179.97438 * 8 6 5 10 10 C 1.50700 * 112.85021 * 309.66278 * 9 8 6 11 11 O 1.21213 * 119.99758 * 205.33168 * 10 9 8 12 12 O 1.34307 * 119.99699 * 25.60908 * 10 9 8 13 13 C 1.34923 * 117.00000 * 179.72351 * 12 10 9 14 14 H 1.08007 * 119.99533 * 0.02562 * 13 12 10 15 15 C 1.38749 * 120.00389 * 179.97438 * 13 12 10 16 16 N 1.31438 * 119.99878 * 0.02562 * 15 13 12 17 17 Si 1.86804 * 120.00141 * 180.02562 * 15 13 12 18 18 H 1.48500 * 109.46919 * 0.02562 * 17 15 13 19 19 H 1.48494 * 109.46750 * 120.00372 * 17 15 13 20 20 H 1.48497 * 109.46768 * 240.00292 * 17 15 13 21 21 C 1.53790 * 113.61560 * 80.85836 * 9 8 6 22 22 C 1.53955 * 87.01854 * 89.22896 * 21 9 8 23 23 C 1.53782 * 87.11463 * 25.36416 * 22 21 9 24 24 H 1.08992 * 109.47098 * 300.00287 * 1 2 3 25 25 H 1.09001 * 109.46551 * 59.99953 * 1 2 3 26 26 H 1.09001 * 109.47365 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.46951 * 179.97438 * 3 2 1 28 28 H 1.08992 * 109.47258 * 300.00178 * 3 2 1 29 29 H 1.09004 * 109.46802 * 59.99895 * 3 2 1 30 30 H 1.08996 * 109.47318 * 299.99994 * 4 2 1 31 31 H 1.08998 * 109.46823 * 60.00746 * 4 2 1 32 32 H 1.08998 * 109.46537 * 180.02562 * 4 2 1 33 33 H 0.96998 * 120.00180 * 359.97438 * 8 6 5 34 34 H 0.96996 * 120.00334 * 179.97438 * 16 15 13 35 35 H 1.08994 * 113.61490 * 203.74856 * 21 9 8 36 36 H 1.09000 * 113.61241 * 334.65000 * 21 9 8 37 37 H 1.08999 * 113.53826 * 270.81085 * 22 21 9 38 38 H 1.09004 * 113.74331 * 139.94321 * 22 21 9 39 39 H 1.09003 * 113.61596 * 220.09520 * 23 22 21 40 40 H 1.08999 * 113.69004 * 89.19358 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2493 5 8 2.0139 -0.6845 1.1856 6 6 1.6522 -1.9724 1.3383 7 8 0.9509 -2.5095 0.5039 8 7 2.0670 -2.6655 2.4171 9 6 1.6729 -4.0666 2.5836 10 6 0.1898 -4.2804 2.4231 11 8 -0.3475 -5.2260 2.9583 12 8 -0.5354 -3.4264 1.6826 13 6 -1.8566 -3.6783 1.5750 14 1 -2.2851 -4.5355 2.0732 15 6 -2.6648 -2.8358 0.8254 16 7 -2.1433 -1.7924 0.2196 17 14 -4.4940 -3.1843 0.6771 18 1 -4.8287 -4.4088 1.4476 19 1 -5.2624 -2.0343 1.2177 20 1 -4.8451 -3.3864 -0.7516 21 6 2.5289 -5.0486 1.7661 22 6 3.4701 -5.1155 2.9826 23 6 2.2575 -4.7254 3.8443 24 1 -0.3633 0.5138 0.8899 25 1 -0.3632 0.5139 -0.8900 26 1 -0.3634 -1.0277 -0.0005 27 1 3.1301 1.4424 0.0005 28 1 1.6768 1.9563 -0.8899 29 1 1.6767 1.9563 0.8900 30 1 1.6767 -1.7489 -1.2493 31 1 1.6767 -0.2074 -2.1392 32 1 3.1300 -0.7217 -1.2490 33 1 2.6266 -2.2367 3.0834 34 1 -2.7082 -1.2035 -0.3048 35 1 2.0261 -5.9914 1.5508 36 1 2.9854 -4.6000 0.8838 37 1 4.2558 -4.3602 2.9671 38 1 3.8491 -6.1163 3.1898 39 1 2.4953 -4.0162 4.6371 40 1 1.6796 -5.5788 4.1989 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000496032857.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:48:53 Heat of formation + Delta-G solvation = -121.979341 kcal Electronic energy + Delta-G solvation = -25024.132288 eV Core-core repulsion = 21420.312422 eV Total energy + Delta-G solvation = -3603.819866 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 285.145 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -40.45566 -39.26607 -37.70343 -36.03208 -34.69479 -33.50936 -32.30685 -31.94638 -26.94077 -26.62557 -26.32490 -25.59146 -24.70319 -22.12109 -20.93226 -19.35555 -18.48252 -17.63119 -17.43397 -16.94572 -15.69102 -15.22151 -15.10618 -14.84397 -14.31006 -14.20807 -14.00161 -13.72880 -13.44271 -12.86264 -12.36678 -12.23229 -12.05122 -12.02127 -11.73992 -11.50557 -11.30854 -11.10327 -11.00635 -10.84752 -10.76224 -10.63068 -10.47170 -10.33542 -10.27451 -10.15849 -9.73749 -9.57355 -8.97386 -8.82261 -8.40256 -8.36650 -6.15042 -3.90512 2.70648 3.15970 3.25849 3.32510 3.55513 3.85598 4.04983 4.59162 4.61696 4.69936 4.82441 5.07258 5.32066 5.33569 5.35681 5.38689 5.61201 5.78188 5.87155 5.94589 6.00895 6.05373 6.12421 6.18550 6.19811 6.28894 6.35488 6.41035 6.68429 6.75309 6.84636 6.96410 7.05300 7.25711 7.47964 7.97742 8.11180 8.38156 8.85494 9.21762 9.36106 10.06964 10.89638 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.011612 B = 0.009967 C = 0.005770 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2410.722831 B = 2808.582695 C = 4851.639829 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.138 3.862 3 C -0.137 4.137 4 C -0.177 4.177 5 O -0.377 6.377 6 C 0.633 3.367 7 O -0.481 6.481 8 N -0.699 5.699 9 C 0.186 3.814 10 C 0.392 3.608 11 O -0.564 6.564 12 O -0.162 6.162 13 C -0.382 4.382 14 H 0.088 0.912 15 C 0.047 3.953 16 N -0.841 5.841 17 Si 0.936 3.064 18 H -0.269 1.269 19 H -0.279 1.279 20 H -0.278 1.278 21 C -0.130 4.130 22 C -0.138 4.138 23 C -0.121 4.121 24 H 0.040 0.960 25 H 0.043 0.957 26 H 0.173 0.827 27 H 0.055 0.945 28 H 0.073 0.927 29 H 0.060 0.940 30 H 0.090 0.910 31 H 0.062 0.938 32 H 0.046 0.954 33 H 0.399 0.601 34 H 0.264 0.736 35 H 0.095 0.905 36 H 0.077 0.923 37 H 0.081 0.919 38 H 0.074 0.926 39 H 0.076 0.924 40 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.323 2.779 1.269 11.728 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.261 4.261 2 C 0.101 3.899 3 C -0.194 4.194 4 C -0.234 4.234 5 O -0.293 6.293 6 C 0.384 3.616 7 O -0.362 6.362 8 N -0.361 5.361 9 C 0.098 3.902 10 C 0.237 3.763 11 O -0.463 6.463 12 O -0.067 6.067 13 C -0.459 4.459 14 H 0.106 0.894 15 C -0.157 4.157 16 N -0.478 5.478 17 Si 0.762 3.238 18 H -0.193 1.193 19 H -0.205 1.205 20 H -0.204 1.204 21 C -0.169 4.169 22 C -0.175 4.175 23 C -0.159 4.159 24 H 0.059 0.941 25 H 0.062 0.938 26 H 0.190 0.810 27 H 0.075 0.925 28 H 0.091 0.909 29 H 0.080 0.920 30 H 0.109 0.891 31 H 0.081 0.919 32 H 0.066 0.934 33 H 0.234 0.766 34 H 0.074 0.926 35 H 0.113 0.887 36 H 0.096 0.904 37 H 0.100 0.900 38 H 0.093 0.907 39 H 0.094 0.906 40 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 10.679 2.547 0.715 11.001 hybrid contribution -0.725 0.319 0.169 0.810 sum 9.954 2.865 0.885 10.396 Atomic orbital electron populations 1.23177 0.90910 1.12525 0.99528 1.22054 0.96519 0.89880 0.81461 1.21845 1.00999 0.94124 1.02469 1.22447 0.99930 1.04168 0.96847 1.86143 1.72018 1.24208 1.46941 1.17995 0.79558 0.80698 0.83306 1.91128 1.34766 1.69270 1.41062 1.44138 1.56831 1.10539 1.24623 1.20843 0.89726 0.80610 0.99011 1.22995 0.88975 0.83558 0.80735 1.90542 1.72091 1.32973 1.50646 1.84341 1.20560 1.45750 1.55999 1.21332 0.80676 1.12231 1.31617 0.89388 1.25225 0.99676 0.95172 0.95633 1.69632 1.34632 1.13398 1.30093 0.85722 0.81451 0.78494 0.78168 1.19310 1.20514 1.20412 1.23292 0.96573 0.99412 0.97598 1.22890 0.96379 1.01998 0.96269 1.23209 0.96580 1.01312 0.94785 0.94070 0.93792 0.81010 0.92547 0.90855 0.92040 0.89099 0.91949 0.93446 0.76620 0.92590 0.88659 0.90417 0.90012 0.90745 0.90579 0.87031 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -4.38 7.78 37.16 0.29 -4.09 16 2 C 0.14 2.50 1.13 -90.62 -0.10 2.40 16 3 C -0.14 -1.93 8.85 37.16 0.33 -1.61 16 4 C -0.18 -3.03 8.37 37.16 0.31 -2.71 16 5 O -0.38 -7.31 9.94 -40.32 -0.40 -7.71 16 6 C 0.63 13.36 7.41 54.05 0.40 13.77 16 7 O -0.48 -11.86 8.40 -27.67 -0.23 -12.09 16 8 N -0.70 -12.57 5.21 -52.78 -0.28 -12.85 16 9 C 0.19 3.53 1.11 -132.15 -0.15 3.38 16 10 C 0.39 10.00 7.02 36.01 0.25 10.25 16 11 O -0.56 -15.40 15.27 -19.05 -0.29 -15.70 16 12 O -0.16 -4.68 5.48 -29.07 -0.16 -4.84 16 13 C -0.38 -11.44 9.65 30.92 0.30 -11.15 16 14 H 0.09 2.71 6.86 -52.48 -0.36 2.35 16 15 C 0.05 1.31 5.49 -17.53 -0.10 1.21 16 16 N -0.84 -23.42 10.07 55.48 0.56 -22.86 16 17 Si 0.94 21.66 29.55 -169.99 -5.02 16.63 16 18 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 19 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 20 H -0.28 -6.29 7.11 56.52 0.40 -5.88 16 21 C -0.13 -2.11 7.43 -25.82 -0.19 -2.31 16 22 C -0.14 -1.68 8.00 -25.83 -0.21 -1.89 16 23 C -0.12 -1.77 7.23 -25.91 -0.19 -1.96 16 24 H 0.04 0.90 8.14 -51.93 -0.42 0.48 16 25 H 0.04 0.86 8.14 -51.93 -0.42 0.43 16 26 H 0.17 4.37 2.73 -51.93 -0.14 4.23 16 27 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 28 H 0.07 0.91 8.14 -51.93 -0.42 0.48 16 29 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 30 H 0.09 1.84 5.88 -51.93 -0.31 1.54 16 31 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 32 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 33 H 0.40 5.73 8.74 -40.82 -0.36 5.37 16 34 H 0.26 6.86 8.31 -40.82 -0.34 6.52 16 35 H 0.09 1.62 8.09 -51.93 -0.42 1.20 16 36 H 0.08 1.27 8.14 -51.93 -0.42 0.84 16 37 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 38 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 39 H 0.08 0.94 8.11 -51.93 -0.42 0.51 16 40 H 0.11 1.76 7.37 -51.93 -0.38 1.38 16 LS Contribution 322.23 15.07 4.86 4.86 Total: -1.00 -33.40 322.23 -5.77 -39.17 By element: Atomic # 1 Polarization: 15.83 SS G_CDS: -5.75 Total: 10.08 kcal Atomic # 6 Polarization: 4.35 SS G_CDS: 0.95 Total: 5.30 kcal Atomic # 7 Polarization: -35.99 SS G_CDS: 0.28 Total: -35.71 kcal Atomic # 8 Polarization: -39.25 SS G_CDS: -1.08 Total: -40.33 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -5.02 Total: 16.63 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -33.40 -5.77 -39.17 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000496032857.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.809 kcal (2) G-P(sol) polarization free energy of solvation -33.403 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.212 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.768 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.171 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.979 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds