Wall clock time and date at job start Tue Mar 31 2020 05:48:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52999 * 109.47379 * 2 1 4 4 C 1.53006 * 109.47027 * 239.99867 * 2 1 3 5 5 O 1.45206 * 109.46749 * 120.00124 * 2 1 3 6 6 C 1.34638 * 117.00029 * 60.00278 * 5 2 1 7 7 O 1.21510 * 119.99843 * 359.97438 * 6 5 2 8 8 N 1.34773 * 120.00036 * 180.02562 * 6 5 2 9 9 C 1.46497 * 120.00060 * 179.97438 * 8 6 5 10 10 C 1.50700 * 112.85021 * 309.66278 * 9 8 6 11 11 O 1.21213 * 119.99758 * 205.33168 * 10 9 8 12 12 O 1.34307 * 119.99699 * 25.60908 * 10 9 8 13 13 C 1.34923 * 117.00000 * 179.72351 * 12 10 9 14 14 H 1.08007 * 119.99533 * 0.02562 * 13 12 10 15 15 C 1.38749 * 120.00389 * 179.97438 * 13 12 10 16 16 N 1.31438 * 119.99878 * 0.02562 * 15 13 12 17 17 Si 1.86804 * 120.00141 * 180.02562 * 15 13 12 18 18 H 1.48500 * 109.46919 * 0.02562 * 17 15 13 19 19 H 1.48494 * 109.46750 * 120.00372 * 17 15 13 20 20 H 1.48497 * 109.46768 * 240.00292 * 17 15 13 21 21 C 1.53790 * 113.61560 * 80.85836 * 9 8 6 22 22 C 1.53955 * 87.01854 * 89.22896 * 21 9 8 23 23 C 1.53782 * 87.11463 * 25.36416 * 22 21 9 24 24 H 1.08992 * 109.47098 * 300.00287 * 1 2 3 25 25 H 1.09001 * 109.46551 * 59.99953 * 1 2 3 26 26 H 1.09001 * 109.47365 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.46951 * 179.97438 * 3 2 1 28 28 H 1.08992 * 109.47258 * 300.00178 * 3 2 1 29 29 H 1.09004 * 109.46802 * 59.99895 * 3 2 1 30 30 H 1.08996 * 109.47318 * 299.99994 * 4 2 1 31 31 H 1.08998 * 109.46823 * 60.00746 * 4 2 1 32 32 H 1.08998 * 109.46537 * 180.02562 * 4 2 1 33 33 H 0.96998 * 120.00180 * 359.97438 * 8 6 5 34 34 H 0.96996 * 120.00334 * 179.97438 * 16 15 13 35 35 H 1.08994 * 113.61490 * 203.74856 * 21 9 8 36 36 H 1.09000 * 113.61241 * 334.65000 * 21 9 8 37 37 H 1.08999 * 113.53826 * 270.81085 * 22 21 9 38 38 H 1.09004 * 113.74331 * 139.94321 * 22 21 9 39 39 H 1.09003 * 113.61596 * 220.09520 * 23 22 21 40 40 H 1.08999 * 113.69004 * 89.19358 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2493 5 8 2.0139 -0.6845 1.1856 6 6 1.6522 -1.9724 1.3383 7 8 0.9509 -2.5095 0.5039 8 7 2.0670 -2.6655 2.4171 9 6 1.6729 -4.0666 2.5836 10 6 0.1898 -4.2804 2.4231 11 8 -0.3475 -5.2260 2.9583 12 8 -0.5354 -3.4264 1.6826 13 6 -1.8566 -3.6783 1.5750 14 1 -2.2851 -4.5355 2.0732 15 6 -2.6648 -2.8358 0.8254 16 7 -2.1433 -1.7924 0.2196 17 14 -4.4940 -3.1843 0.6771 18 1 -4.8287 -4.4088 1.4476 19 1 -5.2624 -2.0343 1.2177 20 1 -4.8451 -3.3864 -0.7516 21 6 2.5289 -5.0486 1.7661 22 6 3.4701 -5.1155 2.9826 23 6 2.2575 -4.7254 3.8443 24 1 -0.3633 0.5138 0.8899 25 1 -0.3632 0.5139 -0.8900 26 1 -0.3634 -1.0277 -0.0005 27 1 3.1301 1.4424 0.0005 28 1 1.6768 1.9563 -0.8899 29 1 1.6767 1.9563 0.8900 30 1 1.6767 -1.7489 -1.2493 31 1 1.6767 -0.2074 -2.1392 32 1 3.1300 -0.7217 -1.2490 33 1 2.6266 -2.2367 3.0834 34 1 -2.7082 -1.2035 -0.3048 35 1 2.0261 -5.9914 1.5508 36 1 2.9854 -4.6000 0.8838 37 1 4.2558 -4.3602 2.9671 38 1 3.8491 -6.1163 3.1898 39 1 2.4953 -4.0162 4.6371 40 1 1.6796 -5.5788 4.1989 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000496032857.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:48:53 Heat of formation + Delta-G solvation = -145.161427 kcal Electronic energy + Delta-G solvation = -25025.137538 eV Core-core repulsion = 21420.312422 eV Total energy + Delta-G solvation = -3604.825117 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 285.145 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -42.04332 -40.90887 -39.45975 -37.63520 -36.70491 -35.05013 -34.15494 -33.68445 -28.38358 -28.17415 -27.91483 -26.86427 -26.54896 -23.69480 -22.53115 -20.82522 -20.03418 -19.71244 -19.04380 -18.76659 -17.19312 -17.02954 -16.58471 -16.46761 -16.24086 -15.99894 -15.40605 -15.27336 -14.93398 -14.45415 -14.11354 -13.66982 -13.53912 -13.42804 -13.19349 -12.98747 -12.85867 -12.71199 -12.46091 -12.37241 -12.25495 -12.21807 -12.14771 -12.06663 -11.84653 -11.77614 -11.54202 -11.15795 -10.77030 -10.62244 -10.47343 -10.01379 -8.22999 -6.14473 1.15951 1.32709 1.34557 1.48894 1.70140 2.15478 2.21472 2.86090 3.08327 3.22168 3.37520 3.62347 3.81750 4.01184 4.02738 4.19092 4.21141 4.66612 4.70564 4.77488 4.78560 4.83030 4.86404 4.91494 4.93487 5.00935 5.06896 5.07960 5.14917 5.21287 5.24642 5.25630 5.46726 5.57496 5.79263 5.89398 6.48657 6.64333 6.78902 7.10109 7.75422 7.96449 8.77679 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.011612 B = 0.009967 C = 0.005770 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2410.722831 B = 2808.582695 C = 4851.639829 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.130 3.870 3 C -0.128 4.128 4 C -0.169 4.169 5 O -0.372 6.372 6 C 0.625 3.375 7 O -0.519 6.519 8 N -0.683 5.683 9 C 0.172 3.828 10 C 0.377 3.623 11 O -0.594 6.594 12 O -0.180 6.180 13 C -0.431 4.431 14 H 0.064 0.936 15 C 0.007 3.993 16 N -0.851 5.851 17 Si 1.004 2.996 18 H -0.275 1.275 19 H -0.263 1.263 20 H -0.264 1.264 21 C -0.134 4.134 22 C -0.105 4.105 23 C -0.113 4.113 24 H 0.021 0.979 25 H 0.054 0.946 26 H 0.140 0.860 27 H 0.078 0.922 28 H 0.093 0.907 29 H 0.060 0.940 30 H 0.053 0.947 31 H 0.079 0.921 32 H 0.070 0.930 33 H 0.419 0.581 34 H 0.270 0.730 35 H 0.079 0.921 36 H 0.074 0.926 37 H 0.111 0.889 38 H 0.102 0.898 39 H 0.106 0.894 40 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.291 3.912 1.485 13.934 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.261 4.261 2 C 0.093 3.907 3 C -0.185 4.185 4 C -0.226 4.226 5 O -0.288 6.288 6 C 0.377 3.623 7 O -0.403 6.403 8 N -0.347 5.347 9 C 0.084 3.916 10 C 0.225 3.775 11 O -0.494 6.494 12 O -0.085 6.085 13 C -0.508 4.508 14 H 0.082 0.918 15 C -0.195 4.195 16 N -0.486 5.486 17 Si 0.825 3.175 18 H -0.199 1.199 19 H -0.187 1.187 20 H -0.189 1.189 21 C -0.173 4.173 22 C -0.142 4.142 23 C -0.151 4.151 24 H 0.040 0.960 25 H 0.073 0.927 26 H 0.157 0.843 27 H 0.097 0.903 28 H 0.112 0.888 29 H 0.079 0.921 30 H 0.072 0.928 31 H 0.098 0.902 32 H 0.089 0.911 33 H 0.257 0.743 34 H 0.080 0.920 35 H 0.097 0.903 36 H 0.093 0.907 37 H 0.129 0.871 38 H 0.120 0.880 39 H 0.125 0.875 40 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 12.699 3.709 0.954 13.263 hybrid contribution -1.336 -0.033 0.083 1.339 sum 11.362 3.676 1.036 11.987 Atomic orbital electron populations 1.23031 0.93875 1.10157 0.99083 1.22302 0.94470 0.92323 0.81575 1.21829 1.02376 0.90844 1.03500 1.22347 1.01286 1.01922 0.97067 1.86165 1.71683 1.23302 1.47654 1.18338 0.79226 0.81157 0.83556 1.91129 1.36409 1.70101 1.42629 1.43979 1.56347 1.10157 1.24187 1.21276 0.85456 0.81814 1.03098 1.24523 0.91644 0.82461 0.78913 1.90493 1.73560 1.33944 1.51387 1.84393 1.20121 1.46852 1.57145 1.21385 0.82079 1.13093 1.34218 0.91803 1.26230 1.04073 0.94701 0.94533 1.69858 1.36145 1.13323 1.29282 0.84761 0.75586 0.78456 0.78671 1.19937 1.18725 1.18900 1.23343 0.97073 0.97664 0.99214 1.22840 0.95192 1.04539 0.91598 1.23260 0.96838 1.00880 0.94102 0.95960 0.92699 0.84278 0.90302 0.88806 0.92096 0.92817 0.90240 0.91087 0.74251 0.92006 0.90263 0.90683 0.87102 0.87991 0.87547 0.88482 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -8.87 7.78 71.98 0.56 -8.31 16 2 C 0.13 4.58 1.13 -10.79 -0.01 4.57 16 3 C -0.13 -3.26 8.85 71.98 0.64 -2.62 16 4 C -0.17 -5.60 8.37 71.98 0.60 -5.00 16 5 O -0.37 -14.14 9.94 -55.47 -0.55 -14.69 16 6 C 0.63 26.59 7.41 129.79 0.96 27.55 16 7 O -0.52 -26.54 8.40 27.84 0.23 -26.31 16 8 N -0.68 -23.99 5.21 -551.32 -2.87 -26.86 16 9 C 0.17 6.48 1.11 3.39 0.00 6.49 16 10 C 0.38 20.11 7.02 71.24 0.50 20.61 16 11 O -0.59 -34.13 15.27 20.76 0.32 -33.82 16 12 O -0.18 -10.95 5.48 22.88 0.13 -10.82 16 13 C -0.43 -27.32 9.65 67.94 0.66 -26.67 16 14 H 0.06 4.21 6.86 -2.91 -0.02 4.19 16 15 C 0.01 0.42 5.49 84.87 0.47 0.89 16 16 N -0.85 -48.84 10.07 21.62 0.22 -48.62 16 17 Si 1.00 45.46 29.55 68.60 2.03 47.49 16 18 H -0.27 -12.58 7.11 99.48 0.71 -11.87 16 19 H -0.26 -11.11 7.11 99.48 0.71 -10.40 16 20 H -0.26 -11.29 7.11 99.48 0.71 -10.58 16 21 C -0.13 -4.26 7.43 31.18 0.23 -4.03 16 22 C -0.10 -2.17 8.00 31.18 0.25 -1.92 16 23 C -0.11 -3.06 7.23 31.12 0.23 -2.84 16 24 H 0.02 0.98 8.14 -2.39 -0.02 0.96 16 25 H 0.05 2.15 8.14 -2.39 -0.02 2.13 16 26 H 0.14 7.31 2.73 -2.39 -0.01 7.30 16 27 H 0.08 1.67 8.14 -2.39 -0.02 1.65 16 28 H 0.09 2.01 8.14 -2.39 -0.02 1.99 16 29 H 0.06 1.55 8.14 -2.39 -0.02 1.53 16 30 H 0.05 2.21 5.88 -2.39 -0.01 2.20 16 31 H 0.08 2.30 8.14 -2.39 -0.02 2.28 16 32 H 0.07 1.98 8.14 -2.39 -0.02 1.96 16 33 H 0.42 11.07 8.74 -92.71 -0.81 10.26 16 34 H 0.27 14.29 8.31 -92.71 -0.77 13.52 16 35 H 0.08 2.75 8.09 -2.39 -0.02 2.73 16 36 H 0.07 2.40 8.14 -2.39 -0.02 2.38 16 37 H 0.11 1.75 8.14 -2.39 -0.02 1.73 16 38 H 0.10 1.66 8.14 -2.38 -0.02 1.64 16 39 H 0.11 2.24 8.11 -2.39 -0.02 2.22 16 40 H 0.10 2.97 7.37 -2.39 -0.02 2.95 16 Total: -1.00 -78.97 322.23 4.83 -74.15 By element: Atomic # 1 Polarization: 30.52 SS G_CDS: 0.25 Total: 30.77 kcal Atomic # 6 Polarization: 3.64 SS G_CDS: 5.08 Total: 8.72 kcal Atomic # 7 Polarization: -72.82 SS G_CDS: -2.66 Total: -75.48 kcal Atomic # 8 Polarization: -85.76 SS G_CDS: 0.13 Total: -85.64 kcal Atomic # 14 Polarization: 45.46 SS G_CDS: 2.03 Total: 47.49 kcal Total: -78.97 4.83 -74.15 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000496032857.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.015 kcal (2) G-P(sol) polarization free energy of solvation -78.972 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -149.987 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.825 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.147 kcal (6) G-S(sol) free energy of system = (1) + (5) -145.161 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds