Wall clock time and date at job start Tue Mar 31 2020 06:06:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53002 * 109.46837 * 2 1 4 4 C 1.53006 * 109.46886 * 240.00494 * 2 1 3 5 5 O 1.45192 * 109.47209 * 120.00499 * 2 1 3 6 6 C 1.34642 * 117.00330 * 60.00096 * 5 2 1 7 7 O 1.21509 * 119.99702 * 359.97438 * 6 5 2 8 8 N 1.34776 * 119.99911 * 180.02562 * 6 5 2 9 9 C 1.46500 * 119.99642 * 179.97438 * 8 6 5 10 10 H 1.08998 * 112.85118 * 23.80585 * 9 8 6 11 11 C 1.53788 * 113.61347 * 154.99682 * 9 8 6 12 12 C 1.53782 * 87.07974 * 140.06485 * 11 9 8 13 13 H 1.09002 * 113.60965 * 89.20006 * 12 11 9 14 14 C 1.50693 * 113.61166 * 220.01747 * 12 11 9 15 15 O 1.21213 * 120.00493 * 0.02562 * 14 12 11 16 16 O 1.34310 * 119.99805 * 179.72730 * 14 12 11 17 17 C 1.34922 * 117.00349 * 180.27868 * 16 14 12 18 18 H 1.08003 * 119.99659 * 359.97438 * 17 16 14 19 19 C 1.38755 * 120.00272 * 179.97438 * 17 16 14 20 20 N 1.31440 * 119.99938 * 179.97438 * 19 17 16 21 21 Si 1.86793 * 119.99861 * 0.02562 * 19 17 16 22 22 H 1.48494 * 109.47399 * 89.99829 * 21 19 17 23 23 H 1.48510 * 109.47111 * 209.99773 * 21 19 17 24 24 H 1.48501 * 109.47357 * 329.99520 * 21 19 17 25 25 C 1.53780 * 113.69276 * 252.53225 * 9 8 6 26 26 H 1.08995 * 109.47210 * 299.99383 * 1 2 3 27 27 H 1.09005 * 109.47605 * 59.99898 * 1 2 3 28 28 H 1.09006 * 109.47140 * 179.97438 * 1 2 3 29 29 H 1.09005 * 109.46838 * 179.97438 * 3 2 1 30 30 H 1.09000 * 109.47510 * 300.00207 * 3 2 1 31 31 H 1.08998 * 109.46975 * 60.00780 * 3 2 1 32 32 H 1.09000 * 109.47030 * 299.99377 * 4 2 1 33 33 H 1.09000 * 109.47281 * 59.99903 * 4 2 1 34 34 H 1.08996 * 109.46872 * 180.02562 * 4 2 1 35 35 H 0.96998 * 120.00247 * 359.97438 * 8 6 5 36 36 H 1.09002 * 113.61131 * 25.51491 * 11 9 8 37 37 H 1.08999 * 113.61115 * 254.61774 * 11 9 8 38 38 H 0.97002 * 119.99938 * 180.02562 * 20 19 17 39 39 H 1.09000 * 113.61315 * 105.45918 * 25 9 8 40 40 H 1.09000 * 113.61001 * 334.55695 * 25 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0399 -0.7212 -1.2494 5 8 2.0140 -0.6845 1.1854 6 6 1.6523 -1.9724 1.3382 7 8 0.9509 -2.5095 0.5038 8 7 2.0673 -2.6656 2.4170 9 6 1.6732 -4.0667 2.5834 10 1 1.4209 -4.5504 1.6397 11 6 2.6462 -4.8813 3.4522 12 6 1.4085 -5.5555 4.0674 13 1 1.0847 -6.4470 3.5303 14 6 1.5174 -5.7753 5.5543 15 8 2.5162 -5.4280 6.1468 16 8 0.5053 -6.3507 6.2239 17 6 0.6645 -6.5131 7.5538 18 1 1.5758 -6.1861 8.0324 19 6 -0.3424 -7.1001 8.3066 20 7 -0.1870 -7.2588 9.6021 21 14 -1.9182 -7.6664 7.4787 22 1 -1.7668 -9.0762 7.0379 23 1 -3.0459 -7.5667 8.4400 24 1 -2.1949 -6.8062 6.3002 25 6 0.6262 -4.2872 3.6878 26 1 -0.3633 0.5137 0.8900 27 1 -0.3634 0.5139 -0.8900 28 1 -0.3634 -1.0277 -0.0005 29 1 3.1299 1.4425 0.0005 30 1 1.6765 1.9564 -0.8899 31 1 1.6766 1.9563 0.8900 32 1 1.6767 -1.7489 -1.2494 33 1 1.6766 -0.2073 -2.1393 34 1 3.1299 -0.7216 -1.2491 35 1 2.6269 -2.2367 3.0832 36 1 3.2109 -4.2753 4.1608 37 1 3.2760 -5.5629 2.8806 38 1 -0.8908 -7.6695 10.1284 39 1 -0.3748 -4.4893 3.3065 40 1 0.6386 -3.5188 4.4608 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000496174288.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:06:39 Heat of formation + Delta-G solvation = -145.502870 kcal Electronic energy + Delta-G solvation = -22608.848014 eV Core-core repulsion = 19004.008091 eV Total energy + Delta-G solvation = -3604.839923 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 285.145 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.96756 -39.88853 -38.34214 -36.87449 -35.20316 -34.44225 -33.12220 -32.29386 -27.66820 -27.60812 -26.99957 -25.66007 -24.87865 -22.71768 -20.65110 -20.30893 -19.13094 -18.13269 -17.94303 -17.32939 -16.53763 -16.24195 -15.54549 -15.42558 -14.83598 -14.64426 -14.44062 -14.31964 -13.82201 -13.48093 -12.83958 -12.76532 -12.51746 -12.40866 -12.33914 -12.15991 -12.13914 -12.05767 -11.67213 -11.57834 -11.36711 -11.12975 -10.99310 -10.65316 -10.54812 -10.46748 -10.29117 -10.14934 -9.70291 -9.26005 -9.06411 -8.68359 -6.37394 -4.13104 2.05569 2.72739 3.12228 3.24302 3.33901 3.39735 3.93425 4.20490 4.25947 4.46726 4.50377 4.50740 4.58660 4.65477 4.87221 5.00795 5.13777 5.20229 5.28012 5.33010 5.42687 5.50604 5.61340 5.62245 5.70268 5.72962 5.82796 5.93858 5.98969 6.02777 6.05700 6.16940 6.36418 6.44747 6.53359 7.35062 7.73673 8.03379 8.28915 8.61298 9.01270 9.69230 10.71144 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.031973 B = 0.003070 C = 0.002983 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 875.521922 B = 9117.388618 C = 9382.926737 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.136 3.864 3 C -0.141 4.141 4 C -0.183 4.183 5 O -0.366 6.366 6 C 0.650 3.350 7 O -0.571 6.571 8 N -0.697 5.697 9 C 0.138 3.862 10 H 0.123 0.877 11 C -0.122 4.122 12 C -0.098 4.098 13 H 0.118 0.882 14 C 0.419 3.581 15 O -0.540 6.540 16 O -0.249 6.249 17 C -0.382 4.382 18 H 0.109 0.891 19 C 0.065 3.935 20 N -0.875 5.875 21 Si 0.905 3.095 22 H -0.273 1.273 23 H -0.282 1.282 24 H -0.259 1.259 25 C -0.135 4.135 26 H 0.060 0.940 27 H 0.069 0.931 28 H 0.089 0.911 29 H 0.066 0.934 30 H 0.079 0.921 31 H 0.067 0.933 32 H 0.088 0.912 33 H 0.069 0.931 34 H 0.059 0.941 35 H 0.408 0.592 36 H 0.103 0.897 37 H 0.082 0.918 38 H 0.279 0.721 39 H 0.083 0.917 40 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.407 13.329 -20.818 24.836 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C 0.099 3.901 3 C -0.198 4.198 4 C -0.240 4.240 5 O -0.281 6.281 6 C 0.404 3.596 7 O -0.460 6.460 8 N -0.355 5.355 9 C 0.034 3.966 10 H 0.141 0.859 11 C -0.160 4.160 12 C -0.118 4.118 13 H 0.136 0.864 14 C 0.265 3.735 15 O -0.435 6.435 16 O -0.157 6.157 17 C -0.458 4.458 18 H 0.126 0.874 19 C -0.138 4.138 20 N -0.515 5.515 21 Si 0.730 3.270 22 H -0.199 1.199 23 H -0.208 1.208 24 H -0.183 1.183 25 C -0.174 4.174 26 H 0.079 0.921 27 H 0.088 0.912 28 H 0.107 0.893 29 H 0.085 0.915 30 H 0.098 0.902 31 H 0.086 0.914 32 H 0.107 0.893 33 H 0.088 0.912 34 H 0.078 0.922 35 H 0.244 0.756 36 H 0.122 0.878 37 H 0.101 0.899 38 H 0.090 0.910 39 H 0.102 0.898 40 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 2.205 13.150 -20.931 24.817 hybrid contribution -0.496 -0.150 0.235 0.569 sum 1.710 13.000 -20.696 24.500 Atomic orbital electron populations 1.22522 0.93973 1.05198 1.02442 1.22049 0.94408 0.91482 0.82146 1.21863 1.02229 0.92620 1.03105 1.22517 1.01508 1.03579 0.96438 1.86311 1.71583 1.23805 1.46410 1.18156 0.78743 0.80428 0.82294 1.90884 1.41155 1.70399 1.43562 1.44832 1.55031 1.12303 1.23284 1.22622 0.96220 0.78666 0.99073 0.85940 1.23312 0.96186 0.98527 0.97976 1.21966 0.98956 0.99484 0.91357 0.86373 1.22602 0.82472 0.79033 0.89391 1.90588 1.31964 1.50985 1.69960 1.83527 1.41642 1.66806 1.23755 1.20656 1.06213 1.40904 0.78015 0.87372 1.24554 0.98716 0.95837 0.94712 1.69609 1.34786 1.42029 1.05036 0.86222 0.81374 0.79709 0.79692 1.19857 1.20795 1.18313 1.23439 0.99074 0.96614 0.98231 0.92121 0.91239 0.89260 0.91490 0.90204 0.91434 0.89308 0.91230 0.92216 0.75637 0.87816 0.89885 0.91047 0.89790 0.88917 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.76 8.37 37.16 0.31 -1.44 16 2 C 0.14 1.30 1.13 -90.62 -0.10 1.20 16 3 C -0.14 -0.98 8.85 37.16 0.33 -0.65 16 4 C -0.18 -1.66 8.37 37.16 0.31 -1.35 16 5 O -0.37 -4.28 9.94 -40.33 -0.40 -4.68 16 6 C 0.65 8.36 8.06 54.05 0.44 8.79 16 7 O -0.57 -8.32 11.48 -19.28 -0.22 -8.55 16 8 N -0.70 -8.07 5.36 -57.93 -0.31 -8.38 16 9 C 0.14 1.65 4.24 -67.11 -0.28 1.37 16 10 H 0.12 1.44 7.46 -51.93 -0.39 1.05 16 11 C -0.12 -1.58 7.16 -25.91 -0.19 -1.76 16 12 C -0.10 -1.55 4.26 -90.96 -0.39 -1.93 16 13 H 0.12 1.61 8.14 -51.93 -0.42 1.19 16 14 C 0.42 9.54 7.43 36.00 0.27 9.81 16 15 O -0.54 -13.84 15.14 -19.05 -0.29 -14.13 16 16 O -0.25 -6.51 8.58 -20.71 -0.18 -6.69 16 17 C -0.38 -11.34 10.10 30.92 0.31 -11.03 16 18 H 0.11 3.54 7.09 -52.48 -0.37 3.16 16 19 C 0.07 1.88 5.49 -17.53 -0.10 1.78 16 20 N -0.88 -25.98 13.96 55.48 0.77 -25.21 16 21 Si 0.90 21.42 28.62 -169.99 -4.86 16.56 16 22 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 23 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 24 H -0.26 -6.00 7.11 56.52 0.40 -5.60 16 25 C -0.13 -1.89 7.43 -25.92 -0.19 -2.08 16 26 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 27 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 28 H 0.09 1.06 5.88 -51.93 -0.31 0.76 16 29 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 31 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.09 1.01 5.88 -51.93 -0.31 0.70 16 33 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 34 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 35 H 0.41 4.13 8.84 -40.82 -0.36 3.77 16 36 H 0.10 1.46 7.41 -51.93 -0.38 1.08 16 37 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 38 H 0.28 7.57 8.31 -40.82 -0.34 7.23 16 39 H 0.08 1.11 8.14 -51.93 -0.42 0.69 16 40 H 0.09 1.39 8.09 -51.93 -0.42 0.97 16 LS Contribution 335.66 15.07 5.06 5.06 Total: -1.00 -33.71 335.66 -5.61 -39.32 By element: Atomic # 1 Polarization: 9.89 SS G_CDS: -5.90 Total: 3.99 kcal Atomic # 6 Polarization: 1.98 SS G_CDS: 0.72 Total: 2.70 kcal Atomic # 7 Polarization: -34.06 SS G_CDS: 0.46 Total: -33.59 kcal Atomic # 8 Polarization: -32.95 SS G_CDS: -1.09 Total: -34.04 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -4.86 Total: 16.56 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -33.71 -5.61 -39.32 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000496174288.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -106.179 kcal (2) G-P(sol) polarization free energy of solvation -33.713 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.892 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.611 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.324 kcal (6) G-S(sol) free energy of system = (1) + (5) -145.503 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds