Wall clock time and date at job start Tue Mar 31 2020 06:06:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53002 * 109.46837 * 2 1 4 4 C 1.53006 * 109.46886 * 240.00494 * 2 1 3 5 5 O 1.45192 * 109.47209 * 120.00499 * 2 1 3 6 6 C 1.34642 * 117.00330 * 60.00096 * 5 2 1 7 7 O 1.21509 * 119.99702 * 359.97438 * 6 5 2 8 8 N 1.34776 * 119.99911 * 180.02562 * 6 5 2 9 9 C 1.46500 * 119.99642 * 179.97438 * 8 6 5 10 10 H 1.08998 * 112.85118 * 23.80585 * 9 8 6 11 11 C 1.53788 * 113.61347 * 154.99682 * 9 8 6 12 12 C 1.53782 * 87.07974 * 140.06485 * 11 9 8 13 13 H 1.09002 * 113.60965 * 89.20006 * 12 11 9 14 14 C 1.50693 * 113.61166 * 220.01747 * 12 11 9 15 15 O 1.21213 * 120.00493 * 0.02562 * 14 12 11 16 16 O 1.34310 * 119.99805 * 179.72730 * 14 12 11 17 17 C 1.34922 * 117.00349 * 180.27868 * 16 14 12 18 18 H 1.08003 * 119.99659 * 359.97438 * 17 16 14 19 19 C 1.38755 * 120.00272 * 179.97438 * 17 16 14 20 20 N 1.31440 * 119.99938 * 179.97438 * 19 17 16 21 21 Si 1.86793 * 119.99861 * 0.02562 * 19 17 16 22 22 H 1.48494 * 109.47399 * 89.99829 * 21 19 17 23 23 H 1.48510 * 109.47111 * 209.99773 * 21 19 17 24 24 H 1.48501 * 109.47357 * 329.99520 * 21 19 17 25 25 C 1.53780 * 113.69276 * 252.53225 * 9 8 6 26 26 H 1.08995 * 109.47210 * 299.99383 * 1 2 3 27 27 H 1.09005 * 109.47605 * 59.99898 * 1 2 3 28 28 H 1.09006 * 109.47140 * 179.97438 * 1 2 3 29 29 H 1.09005 * 109.46838 * 179.97438 * 3 2 1 30 30 H 1.09000 * 109.47510 * 300.00207 * 3 2 1 31 31 H 1.08998 * 109.46975 * 60.00780 * 3 2 1 32 32 H 1.09000 * 109.47030 * 299.99377 * 4 2 1 33 33 H 1.09000 * 109.47281 * 59.99903 * 4 2 1 34 34 H 1.08996 * 109.46872 * 180.02562 * 4 2 1 35 35 H 0.96998 * 120.00247 * 359.97438 * 8 6 5 36 36 H 1.09002 * 113.61131 * 25.51491 * 11 9 8 37 37 H 1.08999 * 113.61115 * 254.61774 * 11 9 8 38 38 H 0.97002 * 119.99938 * 180.02562 * 20 19 17 39 39 H 1.09000 * 113.61315 * 105.45918 * 25 9 8 40 40 H 1.09000 * 113.61001 * 334.55695 * 25 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0399 -0.7212 -1.2494 5 8 2.0140 -0.6845 1.1854 6 6 1.6523 -1.9724 1.3382 7 8 0.9509 -2.5095 0.5038 8 7 2.0673 -2.6656 2.4170 9 6 1.6732 -4.0667 2.5834 10 1 1.4209 -4.5504 1.6397 11 6 2.6462 -4.8813 3.4522 12 6 1.4085 -5.5555 4.0674 13 1 1.0847 -6.4470 3.5303 14 6 1.5174 -5.7753 5.5543 15 8 2.5162 -5.4280 6.1468 16 8 0.5053 -6.3507 6.2239 17 6 0.6645 -6.5131 7.5538 18 1 1.5758 -6.1861 8.0324 19 6 -0.3424 -7.1001 8.3066 20 7 -0.1870 -7.2588 9.6021 21 14 -1.9182 -7.6664 7.4787 22 1 -1.7668 -9.0762 7.0379 23 1 -3.0459 -7.5667 8.4400 24 1 -2.1949 -6.8062 6.3002 25 6 0.6262 -4.2872 3.6878 26 1 -0.3633 0.5137 0.8900 27 1 -0.3634 0.5139 -0.8900 28 1 -0.3634 -1.0277 -0.0005 29 1 3.1299 1.4425 0.0005 30 1 1.6765 1.9564 -0.8899 31 1 1.6766 1.9563 0.8900 32 1 1.6767 -1.7489 -1.2494 33 1 1.6766 -0.2073 -2.1393 34 1 3.1299 -0.7216 -1.2491 35 1 2.6269 -2.2367 3.0832 36 1 3.2109 -4.2753 4.1608 37 1 3.2760 -5.5629 2.8806 38 1 -0.8908 -7.6695 10.1284 39 1 -0.3748 -4.4893 3.3065 40 1 0.6386 -3.5188 4.4608 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000496174288.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:06:39 Heat of formation + Delta-G solvation = -168.645829 kcal Electronic energy + Delta-G solvation = -22609.851568 eV Core-core repulsion = 19004.008091 eV Total energy + Delta-G solvation = -3605.843477 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 285.145 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.97505 -41.40307 -39.76578 -37.93165 -37.10913 -35.33373 -34.50408 -34.06868 -28.69498 -28.32170 -28.26519 -26.77414 -26.59219 -23.85190 -21.95787 -21.30723 -20.43384 -20.11196 -19.09012 -18.86780 -17.66748 -17.16939 -17.06278 -16.83348 -16.20267 -16.11568 -15.52867 -15.36779 -15.27502 -14.53740 -14.40260 -14.08486 -13.80485 -13.54518 -13.33851 -13.23654 -13.03936 -12.87743 -12.83148 -12.56778 -12.47315 -12.36328 -12.31567 -12.24503 -12.09370 -11.85565 -11.67225 -11.35754 -11.08092 -11.01227 -10.83745 -10.17339 -8.55202 -6.41850 1.16359 1.29273 1.34459 1.52052 1.57877 1.75253 2.27054 2.45415 2.90192 3.18824 3.36837 3.45267 3.72403 3.78591 3.83909 3.91642 3.98368 4.42787 4.48775 4.60381 4.61634 4.65455 4.70198 4.78270 4.80238 4.88208 4.88522 4.91216 4.95979 5.05126 5.18482 5.32260 5.35380 5.46531 5.49519 5.59598 5.89572 6.40823 6.54580 6.82776 7.34155 7.60967 8.57895 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.031973 B = 0.003070 C = 0.002983 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 875.521922 B = 9117.388618 C = 9382.926737 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.123 3.877 3 C -0.137 4.137 4 C -0.179 4.179 5 O -0.372 6.372 6 C 0.649 3.351 7 O -0.588 6.588 8 N -0.693 5.693 9 C 0.157 3.843 10 H 0.136 0.864 11 C -0.114 4.114 12 C -0.098 4.098 13 H 0.151 0.849 14 C 0.420 3.580 15 O -0.574 6.574 16 O -0.257 6.257 17 C -0.408 4.408 18 H 0.056 0.944 19 C 0.014 3.986 20 N -0.919 5.919 21 Si 0.983 3.017 22 H -0.259 1.259 23 H -0.267 1.267 24 H -0.249 1.249 25 C -0.135 4.135 26 H 0.058 0.942 27 H 0.091 0.909 28 H 0.063 0.937 29 H 0.069 0.931 30 H 0.103 0.897 31 H 0.066 0.934 32 H 0.064 0.936 33 H 0.090 0.910 34 H 0.062 0.938 35 H 0.415 0.585 36 H 0.089 0.911 37 H 0.109 0.891 38 H 0.289 0.711 39 H 0.097 0.903 40 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.263 13.811 -23.714 27.471 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C 0.087 3.913 3 C -0.194 4.194 4 C -0.236 4.236 5 O -0.286 6.286 6 C 0.402 3.598 7 O -0.479 6.479 8 N -0.351 5.351 9 C 0.053 3.947 10 H 0.154 0.846 11 C -0.152 4.152 12 C -0.118 4.118 13 H 0.168 0.832 14 C 0.267 3.733 15 O -0.470 6.470 16 O -0.166 6.166 17 C -0.484 4.484 18 H 0.074 0.926 19 C -0.185 4.185 20 N -0.559 5.559 21 Si 0.803 3.197 22 H -0.183 1.183 23 H -0.192 1.192 24 H -0.172 1.172 25 C -0.174 4.174 26 H 0.077 0.923 27 H 0.110 0.890 28 H 0.082 0.918 29 H 0.088 0.912 30 H 0.121 0.879 31 H 0.085 0.915 32 H 0.083 0.917 33 H 0.109 0.891 34 H 0.081 0.919 35 H 0.251 0.749 36 H 0.107 0.893 37 H 0.127 0.873 38 H 0.099 0.901 39 H 0.115 0.885 40 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 1.097 13.659 -23.822 27.482 hybrid contribution -0.002 -0.190 1.121 1.137 sum 1.095 13.468 -22.701 26.419 Atomic orbital electron populations 1.22485 0.94076 1.03781 1.03471 1.22427 0.94542 0.92711 0.81601 1.21892 1.02444 0.90798 1.04233 1.22469 1.01641 1.02320 0.97163 1.86326 1.71595 1.23170 1.47553 1.18262 0.78520 0.80808 0.82181 1.90882 1.41930 1.70879 1.44216 1.44777 1.54895 1.12198 1.23267 1.22401 0.94620 0.78904 0.98732 0.84626 1.23296 0.95610 0.98589 0.97674 1.22306 1.01740 1.01767 0.85958 0.83152 1.24190 0.80923 0.76278 0.91918 1.90571 1.33160 1.51736 1.71534 1.83549 1.42983 1.68229 1.21890 1.20323 1.05300 1.42895 0.79906 0.92578 1.25593 1.02554 0.95129 0.95265 1.69710 1.36603 1.42784 1.06797 0.85072 0.76020 0.79729 0.78902 1.18318 1.19209 1.17244 1.23472 1.00305 0.95048 0.98546 0.92317 0.89016 0.91779 0.91181 0.87878 0.91506 0.91718 0.89079 0.91921 0.74885 0.89276 0.87264 0.90128 0.88465 0.90436 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.17 8.37 71.98 0.60 -2.57 16 2 C 0.12 2.14 1.13 -10.79 -0.01 2.12 16 3 C -0.14 -1.55 8.85 71.98 0.64 -0.92 16 4 C -0.18 -2.92 8.37 71.98 0.60 -2.32 16 5 O -0.37 -8.22 9.94 -55.52 -0.55 -8.77 16 6 C 0.65 15.82 8.06 129.79 1.05 16.87 16 7 O -0.59 -16.44 11.48 19.81 0.23 -16.21 16 8 N -0.69 -15.03 5.36 -567.59 -3.04 -18.07 16 9 C 0.16 3.42 4.24 45.52 0.19 3.61 16 10 H 0.14 2.73 7.46 -2.39 -0.02 2.71 16 11 C -0.11 -2.72 7.16 31.12 0.22 -2.49 16 12 C -0.10 -2.93 4.26 -11.02 -0.05 -2.98 16 13 H 0.15 3.59 8.14 -2.39 -0.02 3.57 16 14 C 0.42 19.28 7.43 71.23 0.53 19.81 16 15 O -0.57 -30.51 15.14 20.77 0.31 -30.20 16 16 O -0.26 -13.62 8.58 14.85 0.13 -13.49 16 17 C -0.41 -25.21 10.10 67.94 0.69 -24.52 16 18 H 0.06 3.94 7.09 -2.91 -0.02 3.92 16 19 C 0.01 0.83 5.49 84.88 0.47 1.30 16 20 N -0.92 -55.96 13.96 21.62 0.30 -55.66 16 21 Si 0.98 43.70 28.62 68.60 1.96 45.66 16 22 H -0.26 -10.85 7.11 99.48 0.71 -10.14 16 23 H -0.27 -11.14 7.11 99.48 0.71 -10.43 16 24 H -0.25 -10.57 7.11 99.48 0.71 -9.86 16 25 C -0.13 -3.54 7.43 31.12 0.23 -3.31 16 26 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 27 H 0.09 1.15 8.14 -2.38 -0.02 1.13 16 28 H 0.06 1.47 5.88 -2.38 -0.01 1.46 16 29 H 0.07 0.76 8.14 -2.38 -0.02 0.74 16 30 H 0.10 0.70 8.14 -2.39 -0.02 0.68 16 31 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 32 H 0.06 1.40 5.88 -2.39 -0.01 1.39 16 33 H 0.09 1.05 8.14 -2.39 -0.02 1.04 16 34 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 35 H 0.41 7.94 8.84 -92.71 -0.82 7.12 16 36 H 0.09 2.45 7.41 -2.39 -0.02 2.43 16 37 H 0.11 2.09 8.14 -2.39 -0.02 2.07 16 38 H 0.29 15.84 8.31 -92.71 -0.77 15.07 16 39 H 0.10 2.33 8.14 -2.39 -0.02 2.31 16 40 H 0.08 2.29 8.09 -2.39 -0.02 2.27 16 Total: -1.00 -76.69 335.66 4.73 -71.96 By element: Atomic # 1 Polarization: 19.94 SS G_CDS: 0.23 Total: 20.17 kcal Atomic # 6 Polarization: -0.55 SS G_CDS: 5.16 Total: 4.61 kcal Atomic # 7 Polarization: -70.99 SS G_CDS: -2.74 Total: -73.73 kcal Atomic # 8 Polarization: -68.78 SS G_CDS: 0.12 Total: -68.67 kcal Atomic # 14 Polarization: 43.70 SS G_CDS: 1.96 Total: 45.66 kcal Total: -76.69 4.73 -71.96 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000496174288.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -96.688 kcal (2) G-P(sol) polarization free energy of solvation -76.688 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -173.376 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.730 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.958 kcal (6) G-S(sol) free energy of system = (1) + (5) -168.646 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds