Wall clock time and date at job start Tue Mar 31 2020 05:39:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52999 * 109.46626 * 2 1 4 4 C 1.52997 * 109.47164 * 120.00297 * 2 1 3 5 5 O 1.45202 * 109.46867 * 240.00586 * 2 1 3 6 6 C 1.34628 * 117.00407 * 59.99955 * 5 2 1 7 7 O 1.21513 * 120.00136 * 359.97438 * 6 5 2 8 8 N 1.34780 * 120.00286 * 179.97438 * 6 5 2 9 9 C 1.47068 * 136.05505 * 359.62674 * 8 6 5 10 10 C 1.53755 * 87.88762 * 152.96564 * 9 8 6 11 11 C 1.53008 * 114.57091 * 272.66446 * 10 9 8 12 12 C 1.50694 * 114.08810 * 139.78360 * 10 9 8 13 13 O 1.21218 * 119.99564 * 266.56088 * 12 10 9 14 14 O 1.34312 * 120.00422 * 86.55750 * 12 10 9 15 15 C 1.34922 * 116.99999 * 179.97438 * 14 12 10 16 16 H 1.07996 * 119.99968 * 0.02562 * 15 14 12 17 17 C 1.38751 * 119.99690 * 180.02562 * 15 14 12 18 18 N 1.31446 * 120.00011 * 0.02562 * 17 15 14 19 19 Si 1.86803 * 119.99902 * 180.02562 * 17 15 14 20 20 H 1.48502 * 109.47041 * 359.97438 * 19 17 15 21 21 H 1.48497 * 109.47035 * 119.99923 * 19 17 15 22 22 H 1.48504 * 109.47110 * 240.00102 * 19 17 15 23 23 C 1.47068 * 136.05954 * 179.97438 * 8 6 5 24 24 H 1.09001 * 109.46801 * 59.99811 * 1 2 3 25 25 H 1.09001 * 109.46998 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.47050 * 299.99699 * 1 2 3 27 27 H 1.09000 * 109.47160 * 60.00369 * 3 2 1 28 28 H 1.09002 * 109.46719 * 180.02562 * 3 2 1 29 29 H 1.08993 * 109.47839 * 299.99931 * 3 2 1 30 30 H 1.09001 * 109.47375 * 59.99966 * 4 2 1 31 31 H 1.09002 * 109.46777 * 180.02562 * 4 2 1 32 32 H 1.09000 * 109.47140 * 299.99948 * 4 2 1 33 33 H 1.09003 * 113.46695 * 267.69823 * 9 8 6 34 34 H 1.09004 * 113.46693 * 38.13532 * 9 8 6 35 35 H 1.09001 * 109.46800 * 153.67337 * 11 10 9 36 36 H 1.09000 * 109.46706 * 273.67186 * 11 10 9 37 37 H 1.08997 * 109.47378 * 33.67156 * 11 10 9 38 38 H 0.97002 * 119.99731 * 180.02562 * 18 17 15 39 39 H 1.08998 * 113.46755 * 321.86921 * 23 8 6 40 40 H 1.09004 * 113.46677 * 92.30306 * 23 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0401 -0.7213 1.2492 5 8 2.0140 -0.6844 -1.1857 6 6 1.6523 -0.1727 -2.3772 7 8 0.9509 0.8184 -2.4252 8 7 2.0681 -0.7598 -3.5170 9 6 2.8986 -1.9218 -3.8677 10 6 2.1052 -2.0207 -5.1810 11 6 0.8243 -2.8525 -5.0894 12 6 2.9478 -2.3552 -6.3848 13 8 3.3939 -1.4665 -7.0781 14 8 3.2045 -3.6378 -6.6896 15 6 3.9646 -3.8680 -7.7803 16 1 4.3370 -3.0389 -8.3637 17 6 4.2678 -5.1698 -8.1524 18 7 3.8141 -6.1789 -7.4426 19 14 5.3208 -5.4885 -9.6621 20 1 5.7016 -4.1941 -10.2822 21 1 6.5462 -6.2268 -9.2640 22 1 4.5510 -6.2981 -10.6406 23 6 1.8960 -0.5168 -4.9572 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.6766 1.9563 0.8900 28 1 3.1300 1.4425 -0.0005 29 1 1.6767 1.9564 -0.8899 30 1 1.6767 -1.7490 1.2492 31 1 3.1301 -0.7209 1.2493 32 1 1.6767 -0.2075 2.1392 33 1 3.9504 -1.6754 -4.0134 34 1 2.7529 -2.7752 -3.2054 35 1 0.1155 -2.5123 -5.8445 36 1 1.0603 -3.9029 -5.2596 37 1 0.3846 -2.7347 -4.0991 38 1 4.0264 -7.0890 -7.7025 39 1 0.8962 -0.1734 -5.2231 40 1 2.6832 0.1002 -5.3904 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000497008679.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:39:33 Heat of formation + Delta-G solvation = -121.024199 kcal Electronic energy + Delta-G solvation = -23195.985069 eV Core-core repulsion = 19592.206621 eV Total energy + Delta-G solvation = -3603.778448 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 285.145 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.04552 -39.97633 -38.32630 -36.53506 -35.12119 -34.10258 -32.25239 -31.28102 -27.56287 -27.50737 -27.11894 -26.10311 -25.60049 -23.17996 -21.54507 -19.50430 -18.58971 -17.78321 -17.77505 -16.89881 -16.63345 -15.92807 -15.30999 -15.12951 -14.61528 -14.45973 -14.31855 -14.07060 -13.46519 -13.38095 -13.05643 -12.82163 -12.62486 -12.37072 -12.02826 -12.01388 -11.90192 -11.74312 -11.62962 -11.54870 -11.42401 -11.30985 -11.21300 -10.56589 -10.44604 -10.43572 -10.31696 -10.04592 -9.82943 -9.13410 -8.69055 -8.63941 -6.47659 -4.15353 1.97666 2.88650 3.02140 3.16617 3.23643 3.33380 3.73531 3.90311 4.36337 4.54615 4.58095 4.62597 4.76089 4.84832 5.05090 5.18273 5.26243 5.30642 5.38147 5.53136 5.54730 5.59787 5.64495 5.71559 5.71890 5.78646 5.84836 5.97520 6.06156 6.12745 6.15894 6.20029 6.45005 6.49041 6.74313 7.33929 7.74455 7.87711 8.36164 8.60823 9.01313 9.76487 10.69761 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.035310 B = 0.003414 C = 0.003321 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 792.785027 B = 8199.009496 C = 8428.919550 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.135 3.865 3 C -0.183 4.183 4 C -0.140 4.140 5 O -0.360 6.360 6 C 0.684 3.316 7 O -0.571 6.571 8 N -0.633 5.633 9 C 0.124 3.876 10 C -0.083 4.083 11 C -0.121 4.121 12 C 0.414 3.586 13 O -0.551 6.551 14 O -0.203 6.203 15 C -0.383 4.383 16 H 0.097 0.903 17 C 0.044 3.956 18 N -0.861 5.861 19 Si 0.942 3.058 20 H -0.265 1.265 21 H -0.276 1.276 22 H -0.276 1.276 23 C 0.152 3.848 24 H 0.088 0.912 25 H 0.060 0.940 26 H 0.068 0.932 27 H 0.069 0.931 28 H 0.059 0.941 29 H 0.087 0.913 30 H 0.067 0.933 31 H 0.066 0.934 32 H 0.079 0.921 33 H 0.094 0.906 34 H 0.092 0.908 35 H 0.065 0.935 36 H 0.084 0.916 37 H 0.060 0.940 38 H 0.270 0.730 39 H 0.087 0.913 40 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.584 7.729 14.187 16.794 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C 0.098 3.902 3 C -0.240 4.240 4 C -0.197 4.197 5 O -0.275 6.275 6 C 0.440 3.560 7 O -0.461 6.461 8 N -0.374 5.374 9 C 0.001 3.999 10 C -0.085 4.085 11 C -0.178 4.178 12 C 0.259 3.741 13 O -0.448 6.448 14 O -0.110 6.110 15 C -0.459 4.459 16 H 0.115 0.885 17 C -0.161 4.161 18 N -0.498 5.498 19 Si 0.767 3.233 20 H -0.189 1.189 21 H -0.201 1.201 22 H -0.201 1.201 23 C 0.031 3.969 24 H 0.106 0.894 25 H 0.079 0.921 26 H 0.087 0.913 27 H 0.088 0.912 28 H 0.078 0.922 29 H 0.106 0.894 30 H 0.086 0.914 31 H 0.085 0.915 32 H 0.098 0.902 33 H 0.112 0.888 34 H 0.111 0.889 35 H 0.084 0.916 36 H 0.103 0.897 37 H 0.079 0.921 38 H 0.080 0.920 39 H 0.105 0.895 40 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -4.759 8.121 14.296 17.116 hybrid contribution 0.572 -0.142 -0.630 0.863 sum -4.188 7.978 13.665 16.369 Atomic orbital electron populations 1.22521 0.94043 1.02980 1.04494 1.22064 0.94392 0.92195 0.81554 1.22515 1.01583 0.95454 1.04489 1.21851 1.02296 1.01171 0.94404 1.86328 1.71377 1.56405 1.13382 1.17153 0.78736 0.80283 0.79786 1.90881 1.42167 1.26599 1.86494 1.48079 1.53027 1.32295 1.04033 1.23113 0.95683 0.88161 0.92933 1.21825 0.97346 0.96508 0.92864 1.21494 0.93550 1.00876 1.01850 1.22299 0.82461 0.83136 0.86165 1.90577 1.53309 1.48720 1.52241 1.83858 1.59253 1.24532 1.43319 1.21309 1.28541 0.93573 1.02497 0.88512 1.25338 0.97508 0.94175 0.99044 1.69997 1.42562 0.99063 1.38139 0.85624 0.78946 0.78968 0.79803 1.18901 1.20135 1.20142 1.23000 1.03821 0.95105 0.74990 0.89354 0.92112 0.91278 0.91243 0.92191 0.89388 0.91392 0.91462 0.90242 0.88825 0.88948 0.91608 0.89733 0.92109 0.92033 0.89480 0.87810 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.99 8.37 37.16 0.31 -1.68 16 2 C 0.13 1.54 1.13 -90.62 -0.10 1.44 16 3 C -0.18 -2.00 8.37 37.16 0.31 -1.69 16 4 C -0.14 -1.20 8.85 37.16 0.33 -0.87 16 5 O -0.36 -5.21 9.91 -40.29 -0.40 -5.61 16 6 C 0.68 11.05 8.26 54.06 0.45 11.49 16 7 O -0.57 -9.99 12.66 -19.28 -0.24 -10.23 16 8 N -0.63 -10.03 3.50 -190.87 -0.67 -10.69 16 9 C 0.12 1.95 7.77 -8.37 -0.07 1.88 16 10 C -0.08 -1.46 1.47 -155.02 -0.23 -1.69 16 11 C -0.12 -1.90 9.19 37.16 0.34 -1.56 16 12 C 0.41 9.55 7.04 36.00 0.25 9.80 16 13 O -0.55 -13.92 15.18 -19.06 -0.29 -14.21 16 14 O -0.20 -5.47 9.32 -20.71 -0.19 -5.66 16 15 C -0.38 -10.84 9.65 30.92 0.30 -10.54 16 16 H 0.10 2.77 6.86 -52.49 -0.36 2.41 16 17 C 0.04 1.19 5.49 -17.53 -0.10 1.09 16 18 N -0.86 -24.21 13.67 55.48 0.76 -23.45 16 19 Si 0.94 20.59 29.55 -169.99 -5.02 15.56 16 20 H -0.26 -5.72 7.11 56.52 0.40 -5.32 16 21 H -0.28 -5.84 7.11 56.52 0.40 -5.44 16 22 H -0.28 -5.86 7.11 56.52 0.40 -5.45 16 23 C 0.15 2.44 7.55 -8.51 -0.06 2.37 16 24 H 0.09 1.18 5.88 -51.93 -0.31 0.87 16 25 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 26 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 27 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 28 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 29 H 0.09 1.18 5.88 -51.93 -0.31 0.87 16 30 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 32 H 0.08 0.51 8.14 -51.93 -0.42 0.08 16 33 H 0.09 1.46 8.10 -51.93 -0.42 1.04 16 34 H 0.09 1.33 8.13 -51.93 -0.42 0.91 16 35 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 36 H 0.08 1.47 7.80 -51.93 -0.41 1.06 16 37 H 0.06 0.85 7.94 -51.93 -0.41 0.44 16 38 H 0.27 6.95 8.31 -40.82 -0.34 6.61 16 39 H 0.09 1.29 8.12 -51.93 -0.42 0.87 16 40 H 0.10 1.72 7.45 -51.93 -0.39 1.33 16 LS Contribution 337.87 15.07 5.09 5.09 Total: -1.00 -32.07 337.87 -5.19 -37.26 By element: Atomic # 1 Polarization: 7.84 SS G_CDS: -5.96 Total: 1.89 kcal Atomic # 6 Polarization: 8.33 SS G_CDS: 1.74 Total: 10.06 kcal Atomic # 7 Polarization: -34.24 SS G_CDS: 0.09 Total: -34.15 kcal Atomic # 8 Polarization: -34.59 SS G_CDS: -1.13 Total: -35.71 kcal Atomic # 14 Polarization: 20.59 SS G_CDS: -5.02 Total: 15.56 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -32.07 -5.19 -37.26 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000497008679.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.769 kcal (2) G-P(sol) polarization free energy of solvation -32.068 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.837 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.187 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.255 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.024 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds