Wall clock time and date at job start Tue Mar 31 2020 05:39:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52999 * 109.46626 * 2 1 4 4 C 1.52997 * 109.47164 * 120.00297 * 2 1 3 5 5 O 1.45202 * 109.46867 * 240.00586 * 2 1 3 6 6 C 1.34628 * 117.00407 * 59.99955 * 5 2 1 7 7 O 1.21513 * 120.00136 * 359.97438 * 6 5 2 8 8 N 1.34780 * 120.00286 * 179.97438 * 6 5 2 9 9 C 1.47068 * 136.05505 * 359.62674 * 8 6 5 10 10 C 1.53755 * 87.88762 * 152.96564 * 9 8 6 11 11 C 1.53008 * 114.57091 * 272.66446 * 10 9 8 12 12 C 1.50694 * 114.08810 * 139.78360 * 10 9 8 13 13 O 1.21218 * 119.99564 * 266.56088 * 12 10 9 14 14 O 1.34312 * 120.00422 * 86.55750 * 12 10 9 15 15 C 1.34922 * 116.99999 * 179.97438 * 14 12 10 16 16 H 1.07996 * 119.99968 * 0.02562 * 15 14 12 17 17 C 1.38751 * 119.99690 * 180.02562 * 15 14 12 18 18 N 1.31446 * 120.00011 * 0.02562 * 17 15 14 19 19 Si 1.86803 * 119.99902 * 180.02562 * 17 15 14 20 20 H 1.48502 * 109.47041 * 359.97438 * 19 17 15 21 21 H 1.48497 * 109.47035 * 119.99923 * 19 17 15 22 22 H 1.48504 * 109.47110 * 240.00102 * 19 17 15 23 23 C 1.47068 * 136.05954 * 179.97438 * 8 6 5 24 24 H 1.09001 * 109.46801 * 59.99811 * 1 2 3 25 25 H 1.09001 * 109.46998 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.47050 * 299.99699 * 1 2 3 27 27 H 1.09000 * 109.47160 * 60.00369 * 3 2 1 28 28 H 1.09002 * 109.46719 * 180.02562 * 3 2 1 29 29 H 1.08993 * 109.47839 * 299.99931 * 3 2 1 30 30 H 1.09001 * 109.47375 * 59.99966 * 4 2 1 31 31 H 1.09002 * 109.46777 * 180.02562 * 4 2 1 32 32 H 1.09000 * 109.47140 * 299.99948 * 4 2 1 33 33 H 1.09003 * 113.46695 * 267.69823 * 9 8 6 34 34 H 1.09004 * 113.46693 * 38.13532 * 9 8 6 35 35 H 1.09001 * 109.46800 * 153.67337 * 11 10 9 36 36 H 1.09000 * 109.46706 * 273.67186 * 11 10 9 37 37 H 1.08997 * 109.47378 * 33.67156 * 11 10 9 38 38 H 0.97002 * 119.99731 * 180.02562 * 18 17 15 39 39 H 1.08998 * 113.46755 * 321.86921 * 23 8 6 40 40 H 1.09004 * 113.46677 * 92.30306 * 23 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0401 -0.7213 1.2492 5 8 2.0140 -0.6844 -1.1857 6 6 1.6523 -0.1727 -2.3772 7 8 0.9509 0.8184 -2.4252 8 7 2.0681 -0.7598 -3.5170 9 6 2.8986 -1.9218 -3.8677 10 6 2.1052 -2.0207 -5.1810 11 6 0.8243 -2.8525 -5.0894 12 6 2.9478 -2.3552 -6.3848 13 8 3.3939 -1.4665 -7.0781 14 8 3.2045 -3.6378 -6.6896 15 6 3.9646 -3.8680 -7.7803 16 1 4.3370 -3.0389 -8.3637 17 6 4.2678 -5.1698 -8.1524 18 7 3.8141 -6.1789 -7.4426 19 14 5.3208 -5.4885 -9.6621 20 1 5.7016 -4.1941 -10.2822 21 1 6.5462 -6.2268 -9.2640 22 1 4.5510 -6.2981 -10.6406 23 6 1.8960 -0.5168 -4.9572 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.6766 1.9563 0.8900 28 1 3.1300 1.4425 -0.0005 29 1 1.6767 1.9564 -0.8899 30 1 1.6767 -1.7490 1.2492 31 1 3.1301 -0.7209 1.2493 32 1 1.6767 -0.2075 2.1392 33 1 3.9504 -1.6754 -4.0134 34 1 2.7529 -2.7752 -3.2054 35 1 0.1155 -2.5123 -5.8445 36 1 1.0603 -3.9029 -5.2596 37 1 0.3846 -2.7347 -4.0991 38 1 4.0264 -7.0890 -7.7025 39 1 0.8962 -0.1734 -5.2231 40 1 2.6832 0.1002 -5.3904 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000497008679.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:39:32 Heat of formation + Delta-G solvation = -140.756609 kcal Electronic energy + Delta-G solvation = -23196.840731 eV Core-core repulsion = 19592.206621 eV Total energy + Delta-G solvation = -3604.634109 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 285.145 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -42.38850 -41.35937 -40.01387 -37.74634 -37.08512 -35.09291 -34.29799 -32.65983 -28.41832 -28.35385 -28.28906 -27.75895 -27.26411 -24.80133 -22.78368 -20.81978 -20.06922 -19.82188 -19.06342 -18.34966 -17.75674 -17.44783 -16.73151 -16.67435 -16.23310 -16.07948 -15.40733 -15.25441 -15.00439 -14.60596 -14.37735 -14.22756 -13.65985 -13.40670 -13.33832 -13.13018 -13.10896 -12.94674 -12.89543 -12.86898 -12.82450 -12.46315 -12.39239 -12.27993 -12.17299 -11.99109 -11.63555 -11.41094 -11.23717 -10.93892 -10.67372 -10.02617 -8.52108 -6.31071 0.78706 1.26006 1.37948 1.54906 1.57885 1.63989 2.12138 2.56195 2.73413 2.95151 3.12375 3.50176 3.75496 3.80105 3.85866 3.94677 4.01208 4.32920 4.36083 4.47270 4.51761 4.61133 4.62984 4.71837 4.77508 4.80156 4.81213 4.86104 4.88574 4.91981 5.12917 5.19432 5.26210 5.29115 5.33454 5.43141 5.84310 6.47407 6.63498 6.93596 7.13538 7.75987 8.67849 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.035310 B = 0.003414 C = 0.003321 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 792.785027 B = 8199.009496 C = 8428.919550 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.120 3.880 3 C -0.179 4.179 4 C -0.135 4.135 5 O -0.365 6.365 6 C 0.684 3.316 7 O -0.586 6.586 8 N -0.631 5.631 9 C 0.130 3.870 10 C -0.083 4.083 11 C -0.112 4.112 12 C 0.418 3.582 13 O -0.575 6.575 14 O -0.229 6.229 15 C -0.420 4.420 16 H 0.083 0.917 17 C 0.001 3.999 18 N -0.897 5.897 19 Si 1.013 2.987 20 H -0.265 1.265 21 H -0.261 1.261 22 H -0.262 1.262 23 C 0.156 3.844 24 H 0.060 0.940 25 H 0.062 0.938 26 H 0.095 0.905 27 H 0.096 0.904 28 H 0.059 0.941 29 H 0.059 0.941 30 H 0.068 0.932 31 H 0.067 0.933 32 H 0.107 0.893 33 H 0.092 0.908 34 H 0.109 0.891 35 H 0.073 0.927 36 H 0.066 0.934 37 H 0.083 0.917 38 H 0.279 0.721 39 H 0.102 0.898 40 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.689 7.695 15.501 17.930 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C 0.084 3.916 3 C -0.237 4.237 4 C -0.192 4.192 5 O -0.280 6.280 6 C 0.441 3.559 7 O -0.477 6.477 8 N -0.373 5.373 9 C 0.008 3.992 10 C -0.085 4.085 11 C -0.169 4.169 12 C 0.265 3.735 13 O -0.473 6.473 14 O -0.136 6.136 15 C -0.495 4.495 16 H 0.100 0.900 17 C -0.200 4.200 18 N -0.533 5.533 19 Si 0.832 3.168 20 H -0.189 1.189 21 H -0.186 1.186 22 H -0.186 1.186 23 C 0.035 3.965 24 H 0.079 0.921 25 H 0.081 0.919 26 H 0.114 0.886 27 H 0.115 0.885 28 H 0.078 0.922 29 H 0.078 0.922 30 H 0.087 0.913 31 H 0.086 0.914 32 H 0.125 0.875 33 H 0.110 0.890 34 H 0.127 0.873 35 H 0.092 0.908 36 H 0.085 0.915 37 H 0.102 0.898 38 H 0.088 0.912 39 H 0.120 0.880 40 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -4.877 8.095 15.643 18.276 hybrid contribution 0.557 -0.026 -0.931 1.085 sum -4.320 8.069 14.713 17.327 Atomic orbital electron populations 1.22477 0.93629 1.03059 1.04436 1.22542 0.94964 0.92744 0.81322 1.22476 1.01548 0.95213 1.04420 1.21888 1.02347 1.01263 0.93674 1.86347 1.71414 1.56804 1.13458 1.17217 0.78438 0.80058 0.80199 1.90886 1.42787 1.27249 1.86811 1.47978 1.53051 1.32260 1.03988 1.23079 0.95380 0.88807 0.91973 1.21894 0.97528 0.97898 0.91156 1.21444 0.92718 0.99292 1.03458 1.23351 0.81480 0.81814 0.86843 1.90549 1.54171 1.49093 1.53529 1.83884 1.59908 1.26433 1.43358 1.21461 1.30353 0.94019 1.03690 0.89957 1.26438 0.98251 0.93310 1.02038 1.70070 1.43627 0.99752 1.39900 0.84623 0.77490 0.78897 0.75743 1.18917 1.18562 1.18650 1.22922 1.04445 0.93715 0.75396 0.92063 0.91925 0.88629 0.88532 0.92184 0.92172 0.91252 0.91430 0.87472 0.88955 0.87256 0.90774 0.91541 0.89842 0.91198 0.87997 0.88565 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.54 8.37 71.98 0.60 -2.93 16 2 C 0.12 2.50 1.13 -10.79 -0.01 2.49 16 3 C -0.18 -3.62 8.37 71.98 0.60 -3.01 16 4 C -0.13 -1.91 8.85 71.98 0.64 -1.27 16 5 O -0.37 -10.07 9.91 -55.38 -0.55 -10.62 16 6 C 0.68 21.44 8.26 129.79 1.07 22.52 16 7 O -0.59 -20.19 12.66 19.80 0.25 -19.94 16 8 N -0.63 -19.40 3.50 -988.20 -3.46 -22.86 16 9 C 0.13 4.00 7.77 83.27 0.65 4.65 16 10 C -0.08 -2.87 1.47 -52.51 -0.08 -2.95 16 11 C -0.11 -3.45 9.19 71.98 0.66 -2.78 16 12 C 0.42 19.73 7.04 71.23 0.50 20.24 16 13 O -0.58 -29.83 15.18 20.75 0.32 -29.51 16 14 O -0.23 -12.66 9.32 14.84 0.14 -12.53 16 15 C -0.42 -24.39 9.65 67.94 0.66 -23.74 16 16 H 0.08 4.89 6.86 -2.91 -0.02 4.87 16 17 C 0.00 0.04 5.49 84.87 0.47 0.50 16 18 N -0.90 -50.84 13.67 21.62 0.30 -50.54 16 19 Si 1.01 42.02 29.55 68.60 2.03 44.05 16 20 H -0.27 -10.87 7.11 99.48 0.71 -10.17 16 21 H -0.26 -10.15 7.11 99.48 0.71 -9.45 16 22 H -0.26 -10.22 7.11 99.48 0.71 -9.51 16 23 C 0.16 4.94 7.55 83.17 0.63 5.56 16 24 H 0.06 1.57 5.88 -2.39 -0.01 1.56 16 25 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 26 H 0.09 1.34 8.14 -2.39 -0.02 1.32 16 27 H 0.10 1.38 8.14 -2.39 -0.02 1.36 16 28 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 29 H 0.06 1.57 5.88 -2.39 -0.01 1.56 16 30 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 31 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 32 H 0.11 0.93 8.14 -2.39 -0.02 0.91 16 33 H 0.09 2.86 8.10 -2.39 -0.02 2.84 16 34 H 0.11 3.00 8.13 -2.39 -0.02 2.98 16 35 H 0.07 2.13 8.14 -2.39 -0.02 2.11 16 36 H 0.07 2.30 7.80 -2.39 -0.02 2.29 16 37 H 0.08 2.19 7.94 -2.39 -0.02 2.17 16 38 H 0.28 14.33 8.31 -92.71 -0.77 13.56 16 39 H 0.10 2.92 8.12 -2.39 -0.02 2.90 16 40 H 0.10 3.20 7.45 -2.39 -0.02 3.18 16 Total: -1.00 -70.40 337.87 6.44 -63.96 By element: Atomic # 1 Polarization: 17.68 SS G_CDS: 1.03 Total: 18.72 kcal Atomic # 6 Polarization: 12.89 SS G_CDS: 6.39 Total: 19.27 kcal Atomic # 7 Polarization: -70.24 SS G_CDS: -3.16 Total: -73.40 kcal Atomic # 8 Polarization: -72.75 SS G_CDS: 0.16 Total: -72.60 kcal Atomic # 14 Polarization: 42.02 SS G_CDS: 2.03 Total: 44.05 kcal Total: -70.40 6.44 -63.96 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000497008679.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.797 kcal (2) G-P(sol) polarization free energy of solvation -70.401 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -147.198 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.442 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.959 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.757 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds