Wall clock time and date at job start Tue Mar 31 2020 06:16:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45197 * 1 3 3 C 1.34643 * 116.99867 * 2 1 4 4 O 1.21508 * 120.00126 * 359.97438 * 3 2 1 5 5 N 1.34782 * 119.99773 * 179.97438 * 3 2 1 6 6 C 1.46498 * 119.99613 * 179.97438 * 5 3 2 7 7 C 1.53001 * 109.47273 * 180.02562 * 6 5 3 8 8 C 1.52999 * 109.47399 * 180.02562 * 7 6 5 9 9 C 1.50703 * 109.46850 * 179.97438 * 8 7 6 10 10 O 1.20824 * 120.00159 * 0.02562 * 9 8 7 11 11 O 1.34233 * 119.99694 * 179.97438 * 9 8 7 12 12 C 1.45191 * 116.99742 * 185.11513 * 11 9 8 13 13 C 1.50701 * 112.85371 * 296.94574 * 12 11 9 14 14 H 1.08004 * 119.99923 * 115.13254 * 13 12 11 15 15 C 1.37877 * 119.99806 * 295.41590 * 13 12 11 16 16 N 1.31512 * 120.00075 * 4.92997 * 15 13 12 17 17 Si 1.86803 * 119.99926 * 184.94296 * 15 13 12 18 18 H 1.48502 * 109.47197 * 59.99063 * 17 15 13 19 19 H 1.48496 * 109.47285 * 179.97438 * 17 15 13 20 20 H 1.48506 * 109.46697 * 299.99390 * 17 15 13 21 21 C 1.53785 * 113.61631 * 68.14533 * 12 11 9 22 22 C 1.53959 * 87.02053 * 89.22699 * 21 12 11 23 23 C 1.53784 * 87.11062 * 25.36457 * 22 21 12 24 24 H 1.08996 * 109.46885 * 180.02562 * 1 2 3 25 25 H 1.09000 * 109.47227 * 299.99913 * 1 2 3 26 26 H 1.09003 * 109.47190 * 60.00042 * 1 2 3 27 27 H 0.96992 * 120.00384 * 0.02562 * 5 3 2 28 28 H 1.09000 * 109.47258 * 60.00684 * 6 5 3 29 29 H 1.09003 * 109.47446 * 300.00233 * 6 5 3 30 30 H 1.09000 * 109.46656 * 60.00026 * 7 6 5 31 31 H 1.09003 * 109.46839 * 300.00315 * 7 6 5 32 32 H 1.08995 * 109.47129 * 59.99813 * 8 7 6 33 33 H 1.08995 * 109.46911 * 299.99912 * 8 7 6 34 34 H 0.96998 * 120.00027 * 185.00155 * 16 15 13 35 35 H 1.08993 * 113.61470 * 203.74528 * 21 12 11 36 36 H 1.08997 * 113.61498 * 334.64983 * 21 12 11 37 37 H 1.08997 * 113.53953 * 270.81115 * 22 21 12 38 38 H 1.09001 * 113.74435 * 139.94021 * 22 21 12 39 39 H 1.09002 * 113.61550 * 220.09147 * 23 22 21 40 40 H 1.09001 * 113.69217 * 89.19816 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0632 1.1997 0.0000 4 8 1.4014 2.2187 -0.0005 5 7 3.4092 1.2702 0.0005 6 6 4.0742 2.5755 0.0000 7 6 5.5910 2.3752 0.0001 8 6 6.2856 3.7385 0.0001 9 6 7.7796 3.5410 0.0009 10 8 8.2415 2.4245 0.0009 11 8 8.5973 4.6055 0.0005 12 6 10.0207 4.3433 -0.1140 13 6 10.5656 3.5531 1.0478 14 1 10.9570 2.5591 0.8886 15 6 10.5592 4.0968 2.3148 16 7 9.9905 5.2635 2.5268 17 14 11.3586 3.1765 3.7302 18 1 12.7994 2.9701 3.4355 19 1 11.2175 3.9686 4.9783 20 1 10.6948 1.8592 3.9017 21 6 10.4362 3.7870 -1.4862 22 6 10.6174 5.2488 -1.9342 23 6 10.8518 5.5919 -0.4536 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 3.9375 0.4568 0.0005 28 1 3.7810 3.1331 0.8895 29 1 3.7817 3.1320 -0.8905 30 1 5.8839 1.8178 -0.8897 31 1 5.8839 1.8185 0.8903 32 1 5.9926 4.2954 0.8900 33 1 5.9928 4.2954 -0.8899 34 1 10.0487 5.6798 3.4010 35 1 11.3661 3.2189 -1.4637 36 1 9.6332 3.2660 -2.0075 37 1 9.7117 5.6930 -2.3473 38 1 11.4927 5.4097 -2.5635 39 1 10.3837 6.5258 -0.1424 40 1 11.8952 5.5186 -0.1469 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000497088103.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:16:44 Heat of formation + Delta-G solvation = -152.315506 kcal Electronic energy + Delta-G solvation = -22582.983177 eV Core-core repulsion = 18977.847836 eV Total energy + Delta-G solvation = -3605.135341 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 285.145 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.53865 -39.43781 -37.45021 -36.89577 -35.49995 -34.06225 -32.65638 -32.33416 -28.32939 -26.88622 -26.22085 -24.58992 -23.00713 -22.06512 -21.46270 -19.97720 -18.71001 -18.17854 -17.22106 -16.96472 -16.79227 -15.83681 -15.66278 -15.04361 -14.76512 -14.60079 -14.37730 -14.20803 -13.93167 -13.43019 -13.18146 -12.36972 -12.28802 -12.12749 -12.04951 -11.59728 -11.40733 -11.26769 -11.09286 -10.98696 -10.87419 -10.77757 -10.76148 -10.50213 -10.12573 -9.99968 -9.94312 -9.34681 -9.28821 -8.79105 -8.50870 -8.37828 -6.08186 -4.18875 2.02968 2.67191 3.28672 3.33279 3.37377 3.46341 3.85476 4.16143 4.38042 4.90552 4.92764 4.97568 5.03217 5.14189 5.22977 5.25649 5.55910 5.59384 5.64613 5.70678 5.79827 5.85149 6.01270 6.16896 6.18298 6.22695 6.32111 6.41444 6.44795 6.75104 6.80995 7.16127 7.23647 7.24106 7.51754 7.80266 7.92658 8.16504 8.34073 8.83190 9.19462 9.50644 10.96483 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.020920 B = 0.003411 C = 0.003115 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1338.134347 B = 8206.672809 C = 8985.277716 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.057 3.943 2 O -0.375 6.375 3 C 0.645 3.355 4 O -0.574 6.574 5 N -0.706 5.706 6 C 0.136 3.864 7 C -0.118 4.118 8 C -0.114 4.114 9 C 0.460 3.540 10 O -0.510 6.510 11 O -0.336 6.336 12 C 0.235 3.765 13 C -0.518 4.518 14 H 0.064 0.936 15 C 0.074 3.926 16 N -0.866 5.866 17 Si 0.890 3.110 18 H -0.275 1.275 19 H -0.286 1.286 20 H -0.275 1.275 21 C -0.152 4.152 22 C -0.152 4.152 23 C -0.097 4.097 24 H 0.101 0.899 25 H 0.063 0.937 26 H 0.062 0.938 27 H 0.409 0.591 28 H 0.074 0.926 29 H 0.073 0.927 30 H 0.079 0.921 31 H 0.081 0.919 32 H 0.100 0.900 33 H 0.095 0.905 34 H 0.262 0.738 35 H 0.080 0.920 36 H 0.049 0.951 37 H 0.068 0.932 38 H 0.052 0.948 39 H 0.062 0.938 40 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.527 -5.446 -5.892 14.877 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.038 4.038 2 O -0.288 6.288 3 C 0.397 3.603 4 O -0.463 6.463 5 N -0.365 5.365 6 C 0.014 3.986 7 C -0.156 4.156 8 C -0.153 4.153 9 C 0.302 3.698 10 O -0.399 6.399 11 O -0.252 6.252 12 C 0.201 3.799 13 C -0.556 4.556 14 H 0.083 0.917 15 C -0.131 4.131 16 N -0.503 5.503 17 Si 0.717 3.283 18 H -0.200 1.200 19 H -0.212 1.212 20 H -0.201 1.201 21 C -0.190 4.190 22 C -0.190 4.190 23 C -0.135 4.135 24 H 0.120 0.880 25 H 0.081 0.919 26 H 0.081 0.919 27 H 0.245 0.755 28 H 0.093 0.907 29 H 0.091 0.909 30 H 0.097 0.903 31 H 0.100 0.900 32 H 0.118 0.882 33 H 0.114 0.886 34 H 0.072 0.928 35 H 0.099 0.901 36 H 0.068 0.932 37 H 0.086 0.914 38 H 0.071 0.929 39 H 0.081 0.919 40 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -12.835 -5.153 -5.732 14.972 hybrid contribution 0.536 -0.821 0.933 1.353 sum -12.298 -5.974 -4.799 14.490 Atomic orbital electron populations 1.23177 0.74467 1.03375 1.02733 1.86245 1.24184 1.31236 1.87174 1.18161 0.83541 0.82125 0.76484 1.91003 1.64685 1.34878 1.55781 1.44711 1.02897 1.11120 1.77783 1.21442 0.91679 0.82420 1.03088 1.21556 0.91549 0.97745 1.04789 1.21176 0.90702 0.98148 1.05250 1.22793 0.89354 0.84057 0.73594 1.90568 1.78064 1.25877 1.45375 1.86398 1.21303 1.36349 1.81153 1.20584 0.74449 0.93266 0.91629 1.21195 1.40421 1.02294 0.91673 0.91741 1.25058 0.94216 0.95219 0.98580 1.70044 1.40797 1.16098 1.23329 0.86689 0.80051 0.80111 0.81413 1.20020 1.21208 1.20069 1.23474 1.01092 0.95287 0.99121 1.23027 1.00143 0.97916 0.97906 1.22736 0.99715 0.98851 0.92161 0.88044 0.91860 0.91874 0.75548 0.90740 0.90857 0.90257 0.89984 0.88168 0.88631 0.92829 0.90133 0.93206 0.91359 0.92903 0.91880 0.89952 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.44 10.56 101.05 1.07 1.51 16 2 O -0.37 -4.13 10.62 -40.33 -0.43 -4.55 16 3 C 0.64 8.36 8.75 54.06 0.47 8.83 16 4 O -0.57 -9.11 16.13 -19.28 -0.31 -9.42 16 5 N -0.71 -7.90 5.56 -65.28 -0.36 -8.26 16 6 C 0.14 1.55 5.67 -4.04 -0.02 1.53 16 7 C -0.12 -1.52 4.62 -26.73 -0.12 -1.65 16 8 C -0.11 -1.74 5.81 -27.88 -0.16 -1.90 16 9 C 0.46 9.97 7.34 36.01 0.26 10.23 16 10 O -0.51 -12.28 14.20 -18.75 -0.27 -12.55 16 11 O -0.34 -8.18 9.83 -39.27 -0.39 -8.56 16 12 C 0.23 5.81 0.33 -90.95 -0.03 5.78 16 13 C -0.52 -14.25 7.16 -34.44 -0.25 -14.50 16 14 H 0.06 1.82 7.82 -52.48 -0.41 1.41 16 15 C 0.07 2.04 5.38 -17.82 -0.10 1.94 16 16 N -0.87 -24.22 12.79 55.43 0.71 -23.51 16 17 Si 0.89 21.27 29.54 -169.99 -5.02 16.25 16 18 H -0.27 -6.43 7.11 56.52 0.40 -6.02 16 19 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 20 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 21 C -0.15 -3.27 6.97 -25.82 -0.18 -3.45 16 22 C -0.15 -2.91 8.03 -25.82 -0.21 -3.12 16 23 C -0.10 -2.18 7.08 -25.91 -0.18 -2.36 16 24 H 0.10 0.47 8.14 -51.93 -0.42 0.05 16 25 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 26 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 27 H 0.41 3.80 8.58 -40.82 -0.35 3.45 16 28 H 0.07 0.88 8.14 -51.93 -0.42 0.45 16 29 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 30 H 0.08 1.01 8.10 -51.93 -0.42 0.59 16 31 H 0.08 1.15 8.10 -51.93 -0.42 0.73 16 32 H 0.10 1.47 8.14 -51.93 -0.42 1.05 16 33 H 0.10 1.22 8.14 -51.93 -0.42 0.80 16 34 H 0.26 7.01 8.32 -40.82 -0.34 6.67 16 35 H 0.08 1.70 8.09 -51.93 -0.42 1.28 16 36 H 0.05 1.06 7.55 -51.93 -0.39 0.66 16 37 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 38 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 39 H 0.06 1.46 8.14 -51.93 -0.42 1.04 16 40 H 0.08 1.85 8.09 -51.93 -0.42 1.43 16 LS Contribution 343.76 15.07 5.18 5.18 Total: -1.00 -33.28 343.76 -6.53 -39.81 By element: Atomic # 1 Polarization: 8.97 SS G_CDS: -6.20 Total: 2.77 kcal Atomic # 6 Polarization: 2.30 SS G_CDS: 0.55 Total: 2.85 kcal Atomic # 7 Polarization: -32.12 SS G_CDS: 0.35 Total: -31.77 kcal Atomic # 8 Polarization: -33.70 SS G_CDS: -1.39 Total: -35.09 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.02 Total: 16.25 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -33.28 -6.53 -39.81 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000497088103.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -112.501 kcal (2) G-P(sol) polarization free energy of solvation -33.284 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -145.784 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.531 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.815 kcal (6) G-S(sol) free energy of system = (1) + (5) -152.316 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds