Wall clock time and date at job start Tue Mar 31 2020 06:16:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45197 * 1 3 3 C 1.34643 * 116.99867 * 2 1 4 4 O 1.21508 * 120.00126 * 359.97438 * 3 2 1 5 5 N 1.34782 * 119.99773 * 179.97438 * 3 2 1 6 6 C 1.46498 * 119.99613 * 179.97438 * 5 3 2 7 7 C 1.53001 * 109.47273 * 180.02562 * 6 5 3 8 8 C 1.52999 * 109.47399 * 180.02562 * 7 6 5 9 9 C 1.50703 * 109.46850 * 179.97438 * 8 7 6 10 10 O 1.20824 * 120.00159 * 0.02562 * 9 8 7 11 11 O 1.34233 * 119.99694 * 179.97438 * 9 8 7 12 12 C 1.45191 * 116.99742 * 185.11513 * 11 9 8 13 13 C 1.50701 * 112.85371 * 296.94574 * 12 11 9 14 14 H 1.08004 * 119.99923 * 115.13254 * 13 12 11 15 15 C 1.37877 * 119.99806 * 295.41590 * 13 12 11 16 16 N 1.31512 * 120.00075 * 4.92997 * 15 13 12 17 17 Si 1.86803 * 119.99926 * 184.94296 * 15 13 12 18 18 H 1.48502 * 109.47197 * 59.99063 * 17 15 13 19 19 H 1.48496 * 109.47285 * 179.97438 * 17 15 13 20 20 H 1.48506 * 109.46697 * 299.99390 * 17 15 13 21 21 C 1.53785 * 113.61631 * 68.14533 * 12 11 9 22 22 C 1.53959 * 87.02053 * 89.22699 * 21 12 11 23 23 C 1.53784 * 87.11062 * 25.36457 * 22 21 12 24 24 H 1.08996 * 109.46885 * 180.02562 * 1 2 3 25 25 H 1.09000 * 109.47227 * 299.99913 * 1 2 3 26 26 H 1.09003 * 109.47190 * 60.00042 * 1 2 3 27 27 H 0.96992 * 120.00384 * 0.02562 * 5 3 2 28 28 H 1.09000 * 109.47258 * 60.00684 * 6 5 3 29 29 H 1.09003 * 109.47446 * 300.00233 * 6 5 3 30 30 H 1.09000 * 109.46656 * 60.00026 * 7 6 5 31 31 H 1.09003 * 109.46839 * 300.00315 * 7 6 5 32 32 H 1.08995 * 109.47129 * 59.99813 * 8 7 6 33 33 H 1.08995 * 109.46911 * 299.99912 * 8 7 6 34 34 H 0.96998 * 120.00027 * 185.00155 * 16 15 13 35 35 H 1.08993 * 113.61470 * 203.74528 * 21 12 11 36 36 H 1.08997 * 113.61498 * 334.64983 * 21 12 11 37 37 H 1.08997 * 113.53953 * 270.81115 * 22 21 12 38 38 H 1.09001 * 113.74435 * 139.94021 * 22 21 12 39 39 H 1.09002 * 113.61550 * 220.09147 * 23 22 21 40 40 H 1.09001 * 113.69217 * 89.19816 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0632 1.1997 0.0000 4 8 1.4014 2.2187 -0.0005 5 7 3.4092 1.2702 0.0005 6 6 4.0742 2.5755 0.0000 7 6 5.5910 2.3752 0.0001 8 6 6.2856 3.7385 0.0001 9 6 7.7796 3.5410 0.0009 10 8 8.2415 2.4245 0.0009 11 8 8.5973 4.6055 0.0005 12 6 10.0207 4.3433 -0.1140 13 6 10.5656 3.5531 1.0478 14 1 10.9570 2.5591 0.8886 15 6 10.5592 4.0968 2.3148 16 7 9.9905 5.2635 2.5268 17 14 11.3586 3.1765 3.7302 18 1 12.7994 2.9701 3.4355 19 1 11.2175 3.9686 4.9783 20 1 10.6948 1.8592 3.9017 21 6 10.4362 3.7870 -1.4862 22 6 10.6174 5.2488 -1.9342 23 6 10.8518 5.5919 -0.4536 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 3.9375 0.4568 0.0005 28 1 3.7810 3.1331 0.8895 29 1 3.7817 3.1320 -0.8905 30 1 5.8839 1.8178 -0.8897 31 1 5.8839 1.8185 0.8903 32 1 5.9926 4.2954 0.8900 33 1 5.9928 4.2954 -0.8899 34 1 10.0487 5.6798 3.4010 35 1 11.3661 3.2189 -1.4637 36 1 9.6332 3.2660 -2.0075 37 1 9.7117 5.6930 -2.3473 38 1 11.4927 5.4097 -2.5635 39 1 10.3837 6.5258 -0.1424 40 1 11.8952 5.5186 -0.1469 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000497088103.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:16:43 Heat of formation + Delta-G solvation = -174.401643 kcal Electronic energy + Delta-G solvation = -22583.940904 eV Core-core repulsion = 18977.847836 eV Total energy + Delta-G solvation = -3606.093068 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 285.145 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.49451 -41.17203 -38.97680 -37.97461 -36.59454 -35.84346 -34.41301 -33.80249 -29.28301 -28.46330 -27.54260 -26.34187 -24.61182 -23.41437 -22.41180 -21.47151 -19.96018 -19.66802 -19.00268 -18.05505 -17.71671 -17.32582 -17.08141 -16.73575 -16.63167 -15.96487 -15.72986 -15.36059 -15.02431 -14.98307 -14.41709 -13.91596 -13.47821 -13.38516 -13.27823 -13.20615 -12.96263 -12.90262 -12.75520 -12.48721 -12.33423 -11.96188 -11.90311 -11.81951 -11.80114 -11.79506 -11.64260 -11.04863 -10.75970 -10.43919 -10.28804 -10.25695 -8.15001 -6.31456 1.16693 1.36883 1.38413 1.45866 1.68383 1.77728 2.32849 2.39056 3.15660 3.30326 3.78080 3.98035 3.99995 4.01268 4.07873 4.23007 4.35391 4.37433 4.44576 4.53424 4.58003 4.66090 4.73198 4.78483 4.88007 5.06406 5.08116 5.09545 5.11038 5.27437 5.36133 5.38168 5.53204 5.67418 5.78065 6.02747 6.32641 6.50398 6.71334 7.23401 7.34582 7.48333 8.88335 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.020920 B = 0.003411 C = 0.003115 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1338.134347 B = 8206.672809 C = 8985.277716 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.049 3.951 2 O -0.376 6.376 3 C 0.643 3.357 4 O -0.607 6.607 5 N -0.699 5.699 6 C 0.145 3.855 7 C -0.104 4.104 8 C -0.105 4.105 9 C 0.447 3.553 10 O -0.541 6.541 11 O -0.351 6.351 12 C 0.210 3.790 13 C -0.536 4.536 14 H 0.044 0.956 15 C 0.034 3.966 16 N -0.889 5.889 17 Si 0.943 3.057 18 H -0.266 1.266 19 H -0.278 1.278 20 H -0.282 1.282 21 C -0.149 4.149 22 C -0.125 4.125 23 C -0.099 4.099 24 H 0.136 0.864 25 H 0.060 0.940 26 H 0.062 0.938 27 H 0.419 0.581 28 H 0.073 0.927 29 H 0.082 0.918 30 H 0.081 0.919 31 H 0.068 0.932 32 H 0.108 0.892 33 H 0.127 0.873 34 H 0.263 0.737 35 H 0.078 0.922 36 H 0.048 0.952 37 H 0.081 0.919 38 H 0.084 0.916 39 H 0.049 0.951 40 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.255 -5.716 -6.632 15.885 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.045 4.045 2 O -0.290 6.290 3 C 0.396 3.604 4 O -0.499 6.499 5 N -0.359 5.359 6 C 0.022 3.978 7 C -0.142 4.142 8 C -0.143 4.143 9 C 0.291 3.709 10 O -0.432 6.432 11 O -0.267 6.267 12 C 0.176 3.824 13 C -0.573 4.573 14 H 0.062 0.938 15 C -0.169 4.169 16 N -0.526 5.526 17 Si 0.768 3.232 18 H -0.191 1.191 19 H -0.203 1.203 20 H -0.208 1.208 21 C -0.186 4.186 22 C -0.163 4.163 23 C -0.137 4.137 24 H 0.154 0.846 25 H 0.079 0.921 26 H 0.081 0.919 27 H 0.256 0.744 28 H 0.091 0.909 29 H 0.101 0.899 30 H 0.100 0.900 31 H 0.086 0.914 32 H 0.126 0.874 33 H 0.145 0.855 34 H 0.072 0.928 35 H 0.097 0.903 36 H 0.067 0.933 37 H 0.100 0.900 38 H 0.103 0.897 39 H 0.068 0.932 40 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -13.556 -5.443 -6.476 15.979 hybrid contribution 0.716 -0.809 1.155 1.581 sum -12.840 -6.253 -5.321 15.241 Atomic orbital electron populations 1.23505 0.72725 1.05632 1.02624 1.86260 1.25901 1.30045 1.86774 1.18306 0.83789 0.82248 0.76097 1.90978 1.65458 1.36051 1.57418 1.44652 1.02618 1.11525 1.77073 1.21299 0.90339 0.82632 1.03492 1.21395 0.92296 0.96264 1.04287 1.21266 0.85938 0.99985 1.07102 1.23996 0.91513 0.83143 0.72244 1.90542 1.79113 1.26825 1.46739 1.86371 1.21227 1.37516 1.81564 1.20805 0.74963 0.94501 0.92149 1.21380 1.40919 1.01749 0.93296 0.93783 1.25660 0.94780 0.95982 1.00498 1.70120 1.41678 1.17061 1.23763 0.85864 0.79546 0.78627 0.79135 1.19122 1.20315 1.20813 1.23407 1.00801 0.96930 0.97504 1.22889 1.02079 0.95241 0.96044 1.22696 0.98803 0.97314 0.94906 0.84627 0.92115 0.91907 0.74441 0.90897 0.89942 0.89986 0.91362 0.87377 0.85469 0.92798 0.90319 0.93302 0.90006 0.89721 0.93184 0.90657 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.68 10.56 113.37 1.20 1.88 16 2 O -0.38 -7.73 10.62 -55.52 -0.59 -8.32 16 3 C 0.64 15.89 8.75 129.79 1.14 17.03 16 4 O -0.61 -18.73 16.13 19.81 0.32 -18.41 16 5 N -0.70 -14.61 5.56 -590.84 -3.29 -17.90 16 6 C 0.14 3.04 5.67 86.38 0.49 3.53 16 7 C -0.10 -2.54 4.62 30.59 0.14 -2.40 16 8 C -0.10 -3.03 5.81 29.85 0.17 -2.85 16 9 C 0.45 19.24 7.34 71.24 0.52 19.77 16 10 O -0.54 -26.32 14.20 21.97 0.31 -26.00 16 11 O -0.35 -17.04 9.83 -51.45 -0.51 -17.54 16 12 C 0.21 10.43 0.33 -11.01 0.00 10.43 16 13 C -0.54 -29.95 7.16 25.60 0.18 -29.77 16 14 H 0.04 2.56 7.82 -2.91 -0.02 2.54 16 15 C 0.03 1.85 5.38 84.65 0.46 2.31 16 16 N -0.89 -50.14 12.79 21.45 0.27 -49.87 16 17 Si 0.94 44.00 29.54 68.60 2.03 46.03 16 18 H -0.27 -11.96 7.11 99.48 0.71 -11.26 16 19 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 20 H -0.28 -13.39 7.11 99.48 0.71 -12.68 16 21 C -0.15 -6.30 6.97 31.18 0.22 -6.08 16 22 C -0.13 -4.52 8.03 31.18 0.25 -4.27 16 23 C -0.10 -4.43 7.08 31.12 0.22 -4.21 16 24 H 0.14 0.91 8.14 -2.39 -0.02 0.89 16 25 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 26 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 27 H 0.42 7.15 8.58 -92.71 -0.80 6.35 16 28 H 0.07 1.60 8.14 -2.39 -0.02 1.58 16 29 H 0.08 1.64 8.14 -2.39 -0.02 1.62 16 30 H 0.08 1.97 8.10 -2.39 -0.02 1.95 16 31 H 0.07 1.86 8.10 -2.39 -0.02 1.84 16 32 H 0.11 3.01 8.14 -2.39 -0.02 2.99 16 33 H 0.13 2.89 8.14 -2.39 -0.02 2.87 16 34 H 0.26 14.15 8.32 -92.71 -0.77 13.37 16 35 H 0.08 3.30 8.09 -2.39 -0.02 3.28 16 36 H 0.05 2.04 7.55 -2.39 -0.02 2.02 16 37 H 0.08 2.74 8.14 -2.39 -0.02 2.72 16 38 H 0.08 2.53 8.14 -2.39 -0.02 2.51 16 39 H 0.05 2.31 8.14 -2.39 -0.02 2.29 16 40 H 0.07 3.38 8.09 -2.39 -0.02 3.36 16 Total: -1.00 -72.23 343.76 3.78 -68.46 By element: Atomic # 1 Polarization: 17.95 SS G_CDS: 0.24 Total: 18.19 kcal Atomic # 6 Polarization: 0.38 SS G_CDS: 4.98 Total: 5.36 kcal Atomic # 7 Polarization: -64.75 SS G_CDS: -3.01 Total: -67.76 kcal Atomic # 8 Polarization: -69.82 SS G_CDS: -0.46 Total: -70.28 kcal Atomic # 14 Polarization: 44.00 SS G_CDS: 2.03 Total: 46.03 kcal Total: -72.23 3.78 -68.46 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000497088103.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -105.947 kcal (2) G-P(sol) polarization free energy of solvation -72.232 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -178.179 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.777 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.455 kcal (6) G-S(sol) free energy of system = (1) + (5) -174.402 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds