Wall clock time and date at job start Tue Mar 31 2020 06:16:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34636 * 116.99855 * 2 1 4 4 O 1.21509 * 120.00384 * 0.02562 * 3 2 1 5 5 N 1.34780 * 120.00274 * 180.02562 * 3 2 1 6 6 C 1.46919 * 120.63395 * 179.97438 * 5 3 2 7 7 C 1.53195 * 108.89273 * 126.29715 * 6 5 3 8 8 C 1.53346 * 109.14901 * 54.57640 * 7 6 5 9 9 O 1.45206 * 109.42022 * 178.67239 * 8 7 6 10 10 C 1.34224 * 117.00000 * 270.13463 * 9 8 7 11 11 O 1.20819 * 120.00512 * 359.97438 * 10 9 8 12 12 C 1.50702 * 119.99963 * 179.97438 * 10 9 8 13 13 C 1.52996 * 109.47198 * 179.97438 * 12 10 9 14 14 C 1.50704 * 109.46864 * 179.97438 * 13 12 10 15 15 H 1.07997 * 120.00110 * 0.02562 * 14 13 12 16 16 C 1.37877 * 119.99763 * 180.02562 * 14 13 12 17 17 N 1.31516 * 120.00057 * 180.02562 * 16 14 13 18 18 Si 1.86800 * 120.00313 * 359.97438 * 16 14 13 19 19 H 1.48497 * 109.47055 * 89.99999 * 18 16 14 20 20 H 1.48495 * 109.47320 * 210.00386 * 18 16 14 21 21 H 1.48502 * 109.46826 * 330.00224 * 18 16 14 22 22 C 1.53034 * 109.61010 * 298.71225 * 8 7 6 23 23 C 1.46933 * 120.62602 * 359.97266 * 5 3 2 24 24 H 1.09002 * 109.47122 * 299.99367 * 1 2 3 25 25 H 1.08996 * 109.47710 * 60.00013 * 1 2 3 26 26 H 1.08999 * 109.46771 * 180.02562 * 1 2 3 27 27 H 1.09002 * 109.58751 * 246.15665 * 6 5 3 28 28 H 1.08996 * 109.58750 * 6.43850 * 6 5 3 29 29 H 1.08997 * 109.49914 * 174.65962 * 7 6 5 30 30 H 1.09002 * 109.49585 * 294.75599 * 7 6 5 31 31 H 1.09001 * 109.42242 * 58.75065 * 8 7 6 32 32 H 1.09008 * 109.47070 * 299.99838 * 12 10 9 33 33 H 1.09002 * 109.47372 * 59.99473 * 12 10 9 34 34 H 1.08996 * 109.47466 * 299.99710 * 13 12 10 35 35 H 1.08994 * 109.47546 * 60.00102 * 13 12 10 36 36 H 0.97002 * 120.00350 * 179.97438 * 17 16 14 37 37 H 1.08994 * 109.50232 * 301.42239 * 22 8 7 38 38 H 1.09007 * 109.52628 * 181.33900 * 22 8 7 39 39 H 1.08994 * 109.58580 * 353.42544 * 23 5 3 40 40 H 1.09006 * 109.57831 * 113.70037 * 23 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0632 1.1996 0.0000 4 8 1.4014 2.2187 0.0005 5 7 3.4091 1.2703 -0.0005 6 6 4.0905 2.5719 -0.0011 7 6 5.0811 2.6138 1.1667 8 6 6.0233 1.4077 1.0705 9 8 6.9851 1.4586 2.1572 10 6 8.1311 2.1181 1.9262 11 8 8.3246 2.6353 0.8516 12 6 9.1767 2.2133 3.0073 13 6 10.3751 3.0107 2.4890 14 6 11.4204 3.1065 3.5704 15 1 11.2474 2.6445 4.5311 16 6 12.5976 3.7840 3.3332 17 7 13.5100 3.8672 4.2767 18 14 12.8972 4.5826 1.6713 19 1 12.3887 5.9776 1.6936 20 1 14.3536 4.5911 1.3815 21 1 12.1873 3.8137 0.6176 22 6 5.2125 0.1135 1.1675 23 6 4.2229 0.0469 -0.0005 24 1 -0.3633 0.5137 0.8901 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 4.6274 2.7029 -0.9406 28 1 3.3559 3.3689 0.1141 29 1 5.6597 3.5363 1.1201 30 1 4.5346 2.5737 2.1090 31 1 6.5509 1.4351 0.1171 32 1 8.7546 2.7158 3.8778 33 1 9.5014 1.2114 3.2882 34 1 10.7972 2.5080 1.6188 35 1 10.0509 4.0126 2.2079 36 1 14.3384 4.3435 4.1098 37 1 4.6649 0.0969 2.1098 38 1 5.8859 -0.7426 1.1229 39 1 3.5759 -0.8223 0.1176 40 1 4.7686 -0.0289 -0.9411 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000497188303.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:16:37 Heat of formation + Delta-G solvation = -175.488578 kcal Electronic energy + Delta-G solvation = -22494.057362 eV Core-core repulsion = 18887.917161 eV Total energy + Delta-G solvation = -3606.140201 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 285.145 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.05225 -40.25084 -38.34741 -36.67449 -35.97896 -33.65327 -32.56392 -31.57773 -31.36735 -28.08739 -26.73823 -25.14039 -23.81173 -22.30053 -21.44917 -20.24390 -19.81157 -18.56065 -17.66517 -17.38536 -16.88245 -16.72362 -15.97404 -15.62720 -15.20474 -14.84574 -14.47106 -14.21033 -14.10565 -13.85135 -13.43322 -13.21910 -12.98132 -12.71688 -12.62700 -12.41779 -11.96672 -11.67366 -11.61264 -11.48749 -11.13430 -11.06147 -11.00530 -10.79717 -10.37689 -10.26410 -10.19191 -9.95168 -9.73419 -9.28220 -9.20256 -8.57657 -6.09045 -4.09107 1.76893 2.44462 2.64058 2.91763 3.32652 3.39776 3.48258 3.49235 4.32929 4.43901 4.44289 4.60754 4.76189 4.77904 4.85864 4.88358 4.90240 5.02041 5.13435 5.25589 5.27592 5.38900 5.44002 5.52228 5.58288 5.73640 5.88891 5.91280 5.96689 6.01363 6.06374 6.47048 6.76725 6.91726 7.21073 7.28404 7.68672 7.90071 8.16903 8.44905 8.93269 9.52594 11.03505 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.047660 B = 0.002772 C = 0.002713 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 587.353148 B =10096.881519 C =10319.209820 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.056 3.944 2 O -0.371 6.371 3 C 0.651 3.349 4 O -0.572 6.572 5 N -0.595 5.595 6 C 0.131 3.869 7 C -0.151 4.151 8 C 0.085 3.915 9 O -0.357 6.357 10 C 0.457 3.543 11 O -0.510 6.510 12 C -0.096 4.096 13 C -0.002 4.002 14 C -0.528 4.528 15 H 0.075 0.925 16 C 0.070 3.930 17 N -0.900 5.900 18 Si 0.878 3.122 19 H -0.276 1.276 20 H -0.287 1.287 21 H -0.262 1.262 22 C -0.131 4.131 23 C 0.116 3.884 24 H 0.063 0.937 25 H 0.063 0.937 26 H 0.103 0.897 27 H 0.078 0.922 28 H 0.103 0.897 29 H 0.089 0.911 30 H 0.079 0.921 31 H 0.087 0.913 32 H 0.098 0.902 33 H 0.099 0.901 34 H 0.025 0.975 35 H 0.021 0.979 36 H 0.264 0.736 37 H 0.081 0.919 38 H 0.090 0.910 39 H 0.101 0.899 40 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.210 -9.912 -9.022 27.672 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.038 4.038 2 O -0.285 6.285 3 C 0.405 3.595 4 O -0.461 6.461 5 N -0.336 5.336 6 C 0.010 3.990 7 C -0.190 4.190 8 C 0.029 3.971 9 O -0.275 6.275 10 C 0.301 3.699 11 O -0.397 6.397 12 C -0.134 4.134 13 C -0.039 4.039 14 C -0.565 4.565 15 H 0.093 0.907 16 C -0.131 4.131 17 N -0.538 5.538 18 Si 0.705 3.295 19 H -0.202 1.202 20 H -0.213 1.213 21 H -0.186 1.186 22 C -0.170 4.170 23 C -0.007 4.007 24 H 0.082 0.918 25 H 0.082 0.918 26 H 0.121 0.879 27 H 0.097 0.903 28 H 0.121 0.879 29 H 0.108 0.892 30 H 0.098 0.902 31 H 0.105 0.895 32 H 0.117 0.883 33 H 0.117 0.883 34 H 0.044 0.956 35 H 0.039 0.961 36 H 0.074 0.926 37 H 0.099 0.901 38 H 0.108 0.892 39 H 0.119 0.881 40 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -24.281 -9.409 -9.331 27.662 hybrid contribution 0.176 0.550 -0.854 1.031 sum -24.105 -8.859 -10.185 27.627 Atomic orbital electron populations 1.23207 0.74343 1.03510 1.02788 1.86225 1.24209 1.30974 1.87062 1.18008 0.83077 0.82181 0.76224 1.90997 1.64173 1.34944 1.56033 1.46998 1.01997 1.08719 1.75914 1.21643 0.95056 0.83658 0.98633 1.22424 0.97539 0.99362 0.99650 1.22635 0.88144 0.95223 0.91057 1.86640 1.27861 1.69765 1.43206 1.24764 0.81240 0.73934 0.89916 1.90605 1.78336 1.43993 1.26812 1.21550 0.92550 1.04268 0.95008 1.19475 0.91754 0.95224 0.97456 1.21031 1.00325 1.35405 0.99771 0.90658 1.24963 0.95778 0.95613 0.96792 1.69904 1.08081 1.42681 1.33179 0.86796 0.77257 0.80349 0.85137 1.20170 1.21323 1.18609 1.22014 0.97880 0.97297 0.99775 1.21761 0.93474 0.86813 0.98629 0.91803 0.91848 0.87904 0.90329 0.87907 0.89248 0.90230 0.89505 0.88343 0.88318 0.95627 0.96074 0.92585 0.90074 0.89178 0.88094 0.90505 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.35 10.56 101.05 1.07 1.42 16 2 O -0.37 -3.45 9.20 -40.31 -0.37 -3.82 16 3 C 0.65 7.45 8.43 54.06 0.46 7.90 16 4 O -0.57 -8.16 15.54 -19.28 -0.30 -8.46 16 5 N -0.60 -5.92 2.97 -178.53 -0.53 -6.45 16 6 C 0.13 1.30 6.42 -3.71 -0.02 1.28 16 7 C -0.15 -1.67 5.75 -26.45 -0.15 -1.82 16 8 C 0.08 1.00 2.42 -26.53 -0.06 0.94 16 9 O -0.36 -5.29 9.88 -39.24 -0.39 -5.68 16 10 C 0.46 8.14 7.93 36.01 0.29 8.42 16 11 O -0.51 -10.32 15.20 -18.74 -0.28 -10.60 16 12 C -0.10 -1.83 5.75 -27.88 -0.16 -1.99 16 13 C 0.00 -0.04 3.33 -27.88 -0.09 -0.13 16 14 C -0.53 -14.72 9.66 -34.44 -0.33 -15.06 16 15 H 0.08 2.20 7.99 -52.49 -0.42 1.78 16 16 C 0.07 2.04 5.47 -17.82 -0.10 1.94 16 17 N -0.90 -27.42 13.96 55.43 0.77 -26.65 16 18 Si 0.88 21.97 27.47 -169.99 -4.67 17.30 16 19 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 20 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 21 H -0.26 -6.46 6.54 56.52 0.37 -6.09 16 22 C -0.13 -1.16 5.74 -26.59 -0.15 -1.31 16 23 C 0.12 0.89 6.45 -3.69 -0.02 0.86 16 24 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 25 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 26 H 0.10 0.33 8.14 -51.93 -0.42 -0.09 16 27 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 28 H 0.10 1.09 7.00 -51.93 -0.36 0.72 16 29 H 0.09 1.07 8.14 -51.93 -0.42 0.65 16 30 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 31 H 0.09 1.10 7.16 -51.93 -0.37 0.72 16 32 H 0.10 1.75 8.14 -51.92 -0.42 1.32 16 33 H 0.10 1.74 8.14 -51.93 -0.42 1.32 16 34 H 0.03 0.63 7.16 -51.93 -0.37 0.26 16 35 H 0.02 0.52 7.53 -51.93 -0.39 0.12 16 36 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 37 H 0.08 0.74 8.14 -51.93 -0.42 0.31 16 38 H 0.09 0.70 8.14 -51.92 -0.42 0.28 16 39 H 0.10 0.66 6.93 -51.93 -0.36 0.30 16 40 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 LS Contribution 334.51 15.07 5.04 5.04 Total: -1.00 -34.18 334.51 -6.11 -40.30 By element: Atomic # 1 Polarization: 2.64 SS G_CDS: -6.09 Total: -3.45 kcal Atomic # 6 Polarization: 1.76 SS G_CDS: 0.71 Total: 2.47 kcal Atomic # 7 Polarization: -33.34 SS G_CDS: 0.24 Total: -33.10 kcal Atomic # 8 Polarization: -27.22 SS G_CDS: -1.34 Total: -28.56 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -4.67 Total: 17.30 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -34.18 -6.11 -40.30 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000497188303.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -135.190 kcal (2) G-P(sol) polarization free energy of solvation -34.185 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -169.375 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.113 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.298 kcal (6) G-S(sol) free energy of system = (1) + (5) -175.489 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds