Wall clock time and date at job start Tue Mar 31 2020 06:16:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34636 * 116.99855 * 2 1 4 4 O 1.21509 * 120.00384 * 0.02562 * 3 2 1 5 5 N 1.34780 * 120.00274 * 180.02562 * 3 2 1 6 6 C 1.46919 * 120.63395 * 179.97438 * 5 3 2 7 7 C 1.53195 * 108.89273 * 126.29715 * 6 5 3 8 8 C 1.53346 * 109.14901 * 54.57640 * 7 6 5 9 9 O 1.45206 * 109.42022 * 178.67239 * 8 7 6 10 10 C 1.34224 * 117.00000 * 270.13463 * 9 8 7 11 11 O 1.20819 * 120.00512 * 359.97438 * 10 9 8 12 12 C 1.50702 * 119.99963 * 179.97438 * 10 9 8 13 13 C 1.52996 * 109.47198 * 179.97438 * 12 10 9 14 14 C 1.50704 * 109.46864 * 179.97438 * 13 12 10 15 15 H 1.07997 * 120.00110 * 0.02562 * 14 13 12 16 16 C 1.37877 * 119.99763 * 180.02562 * 14 13 12 17 17 N 1.31516 * 120.00057 * 180.02562 * 16 14 13 18 18 Si 1.86800 * 120.00313 * 359.97438 * 16 14 13 19 19 H 1.48497 * 109.47055 * 89.99999 * 18 16 14 20 20 H 1.48495 * 109.47320 * 210.00386 * 18 16 14 21 21 H 1.48502 * 109.46826 * 330.00224 * 18 16 14 22 22 C 1.53034 * 109.61010 * 298.71225 * 8 7 6 23 23 C 1.46933 * 120.62602 * 359.97266 * 5 3 2 24 24 H 1.09002 * 109.47122 * 299.99367 * 1 2 3 25 25 H 1.08996 * 109.47710 * 60.00013 * 1 2 3 26 26 H 1.08999 * 109.46771 * 180.02562 * 1 2 3 27 27 H 1.09002 * 109.58751 * 246.15665 * 6 5 3 28 28 H 1.08996 * 109.58750 * 6.43850 * 6 5 3 29 29 H 1.08997 * 109.49914 * 174.65962 * 7 6 5 30 30 H 1.09002 * 109.49585 * 294.75599 * 7 6 5 31 31 H 1.09001 * 109.42242 * 58.75065 * 8 7 6 32 32 H 1.09008 * 109.47070 * 299.99838 * 12 10 9 33 33 H 1.09002 * 109.47372 * 59.99473 * 12 10 9 34 34 H 1.08996 * 109.47466 * 299.99710 * 13 12 10 35 35 H 1.08994 * 109.47546 * 60.00102 * 13 12 10 36 36 H 0.97002 * 120.00350 * 179.97438 * 17 16 14 37 37 H 1.08994 * 109.50232 * 301.42239 * 22 8 7 38 38 H 1.09007 * 109.52628 * 181.33900 * 22 8 7 39 39 H 1.08994 * 109.58580 * 353.42544 * 23 5 3 40 40 H 1.09006 * 109.57831 * 113.70037 * 23 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0632 1.1996 0.0000 4 8 1.4014 2.2187 0.0005 5 7 3.4091 1.2703 -0.0005 6 6 4.0905 2.5719 -0.0011 7 6 5.0811 2.6138 1.1667 8 6 6.0233 1.4077 1.0705 9 8 6.9851 1.4586 2.1572 10 6 8.1311 2.1181 1.9262 11 8 8.3246 2.6353 0.8516 12 6 9.1767 2.2133 3.0073 13 6 10.3751 3.0107 2.4890 14 6 11.4204 3.1065 3.5704 15 1 11.2474 2.6445 4.5311 16 6 12.5976 3.7840 3.3332 17 7 13.5100 3.8672 4.2767 18 14 12.8972 4.5826 1.6713 19 1 12.3887 5.9776 1.6936 20 1 14.3536 4.5911 1.3815 21 1 12.1873 3.8137 0.6176 22 6 5.2125 0.1135 1.1675 23 6 4.2229 0.0469 -0.0005 24 1 -0.3633 0.5137 0.8901 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 4.6274 2.7029 -0.9406 28 1 3.3559 3.3689 0.1141 29 1 5.6597 3.5363 1.1201 30 1 4.5346 2.5737 2.1090 31 1 6.5509 1.4351 0.1171 32 1 8.7546 2.7158 3.8778 33 1 9.5014 1.2114 3.2882 34 1 10.7972 2.5080 1.6188 35 1 10.0509 4.0126 2.2079 36 1 14.3384 4.3435 4.1098 37 1 4.6649 0.0969 2.1098 38 1 5.8859 -0.7426 1.1229 39 1 3.5759 -0.8223 0.1176 40 1 4.7686 -0.0289 -0.9411 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000497188303.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:16:37 Heat of formation + Delta-G solvation = -197.130122 kcal Electronic energy + Delta-G solvation = -22494.995810 eV Core-core repulsion = 18887.917161 eV Total energy + Delta-G solvation = -3607.078648 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 285.145 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.95169 -41.43836 -39.25526 -37.65544 -37.07290 -35.61858 -33.67763 -33.15503 -32.33006 -28.83182 -28.34116 -26.14402 -24.59719 -23.76679 -22.55819 -21.37075 -21.04190 -19.39405 -19.31280 -18.43228 -18.17058 -17.65595 -17.29570 -16.94331 -16.27221 -15.95989 -15.59190 -15.39875 -15.07963 -14.84771 -14.75872 -14.51588 -14.34034 -13.90965 -13.54817 -13.42335 -13.06184 -12.93793 -12.89196 -12.62204 -12.40966 -12.24521 -12.02307 -11.92591 -11.82387 -11.79386 -11.65590 -11.46704 -11.37746 -11.21697 -10.78316 -10.00331 -8.31219 -6.35477 1.04574 1.23620 1.35305 1.37381 1.50704 1.55559 1.74266 2.35095 2.82936 3.04273 3.53463 3.59145 3.73049 3.85023 3.95760 4.16136 4.24253 4.30352 4.34373 4.36791 4.40574 4.51855 4.57427 4.62498 4.67301 4.69759 4.82190 4.87501 4.95810 5.06294 5.19987 5.28220 5.29656 5.37970 5.46434 5.60721 6.13395 6.22007 6.70269 6.83251 7.08771 7.29713 8.84318 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.047660 B = 0.002772 C = 0.002713 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 587.353148 B =10096.881519 C =10319.209820 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.049 3.951 2 O -0.369 6.369 3 C 0.647 3.353 4 O -0.608 6.608 5 N -0.595 5.595 6 C 0.136 3.864 7 C -0.145 4.145 8 C 0.077 3.923 9 O -0.351 6.351 10 C 0.469 3.531 11 O -0.537 6.537 12 C -0.093 4.093 13 C 0.003 3.997 14 C -0.532 4.532 15 H 0.050 0.950 16 C 0.013 3.987 17 N -0.943 5.943 18 Si 0.940 3.060 19 H -0.269 1.269 20 H -0.280 1.280 21 H -0.256 1.256 22 C -0.123 4.123 23 C 0.118 3.882 24 H 0.058 0.942 25 H 0.060 0.940 26 H 0.138 0.862 27 H 0.090 0.910 28 H 0.094 0.906 29 H 0.077 0.923 30 H 0.077 0.923 31 H 0.083 0.917 32 H 0.111 0.889 33 H 0.113 0.887 34 H 0.018 0.982 35 H 0.015 0.985 36 H 0.268 0.732 37 H 0.080 0.920 38 H 0.105 0.895 39 H 0.118 0.882 40 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.513 -11.113 -10.351 29.691 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.045 4.045 2 O -0.282 6.282 3 C 0.402 3.598 4 O -0.500 6.500 5 N -0.335 5.335 6 C 0.014 3.986 7 C -0.184 4.184 8 C 0.023 3.977 9 O -0.268 6.268 10 C 0.314 3.686 11 O -0.427 6.427 12 C -0.131 4.131 13 C -0.035 4.035 14 C -0.569 4.569 15 H 0.069 0.931 16 C -0.185 4.185 17 N -0.583 5.583 18 Si 0.764 3.236 19 H -0.194 1.194 20 H -0.206 1.206 21 H -0.180 1.180 22 C -0.161 4.161 23 C -0.004 4.004 24 H 0.077 0.923 25 H 0.079 0.921 26 H 0.156 0.844 27 H 0.109 0.891 28 H 0.112 0.888 29 H 0.095 0.905 30 H 0.096 0.904 31 H 0.101 0.899 32 H 0.129 0.871 33 H 0.131 0.869 34 H 0.037 0.963 35 H 0.034 0.966 36 H 0.077 0.923 37 H 0.099 0.901 38 H 0.124 0.876 39 H 0.136 0.864 40 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -25.605 -10.650 -10.651 29.707 hybrid contribution 0.486 0.846 -0.374 1.045 sum -25.119 -9.805 -11.025 29.132 Atomic orbital electron populations 1.23509 0.72783 1.05712 1.02476 1.86234 1.25712 1.29611 1.86652 1.18197 0.83406 0.82324 0.75839 1.90972 1.65054 1.36238 1.57696 1.47102 1.01833 1.09359 1.75227 1.21565 0.94561 0.83816 0.98631 1.22348 0.97391 0.98574 1.00082 1.22996 0.87692 0.97210 0.89822 1.86603 1.27198 1.68666 1.44350 1.24264 0.81782 0.73684 0.88844 1.90600 1.79087 1.45285 1.27689 1.21336 0.91612 1.04456 0.95674 1.19312 0.92622 0.95692 0.95878 1.21356 1.01335 1.34373 0.99877 0.93144 1.25830 0.95763 0.96493 1.00427 1.70025 1.08843 1.44113 1.35355 0.85800 0.77470 0.79576 0.80710 1.19381 1.20557 1.17976 1.22012 0.97818 0.95979 1.00312 1.21930 0.93250 0.86355 0.98848 0.92279 0.92088 0.84420 0.89142 0.88766 0.90454 0.90447 0.89936 0.87114 0.86855 0.96322 0.96616 0.92328 0.90146 0.87619 0.86418 0.88886 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.53 10.56 113.37 1.20 1.73 16 2 O -0.37 -6.11 9.20 -55.46 -0.51 -6.62 16 3 C 0.65 13.95 8.43 129.79 1.09 15.05 16 4 O -0.61 -17.08 15.54 19.81 0.31 -16.77 16 5 N -0.59 -10.73 2.97 -949.17 -2.82 -13.55 16 6 C 0.14 2.54 6.42 86.36 0.55 3.09 16 7 C -0.15 -3.04 5.75 30.78 0.18 -2.87 16 8 C 0.08 1.69 2.42 30.72 0.07 1.76 16 9 O -0.35 -9.74 9.88 -51.35 -0.51 -10.25 16 10 C 0.47 15.99 7.93 71.24 0.56 16.56 16 11 O -0.54 -21.04 15.20 21.98 0.33 -20.71 16 12 C -0.09 -3.43 5.75 29.85 0.17 -3.26 16 13 C 0.00 0.12 3.33 29.85 0.10 0.22 16 14 C -0.53 -29.84 9.66 25.60 0.25 -29.59 16 15 H 0.05 3.00 7.99 -2.91 -0.02 2.98 16 16 C 0.01 0.74 5.47 84.65 0.46 1.20 16 17 N -0.94 -58.18 13.96 21.45 0.30 -57.88 16 18 Si 0.94 45.13 27.47 68.60 1.88 47.02 16 19 H -0.27 -12.50 7.11 99.48 0.71 -11.79 16 20 H -0.28 -13.01 7.11 99.48 0.71 -12.31 16 21 H -0.26 -11.94 6.54 99.48 0.65 -11.29 16 22 C -0.12 -1.82 5.74 30.68 0.18 -1.65 16 23 C 0.12 1.46 6.45 86.37 0.56 2.02 16 24 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 25 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 26 H 0.14 0.49 8.14 -2.39 -0.02 0.47 16 27 H 0.09 1.49 8.14 -2.39 -0.02 1.47 16 28 H 0.09 1.96 7.00 -2.39 -0.02 1.94 16 29 H 0.08 1.81 8.14 -2.39 -0.02 1.79 16 30 H 0.08 1.64 8.14 -2.39 -0.02 1.62 16 31 H 0.08 1.92 7.16 -2.39 -0.02 1.91 16 32 H 0.11 3.79 8.14 -2.38 -0.02 3.77 16 33 H 0.11 3.82 8.14 -2.39 -0.02 3.80 16 34 H 0.02 0.90 7.16 -2.39 -0.02 0.88 16 35 H 0.02 0.75 7.53 -2.39 -0.02 0.73 16 36 H 0.27 15.43 8.31 -92.71 -0.77 14.66 16 37 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16 38 H 0.11 1.29 8.14 -2.38 -0.02 1.27 16 39 H 0.12 1.14 6.93 -2.39 -0.02 1.12 16 40 H 0.09 0.92 8.14 -2.38 -0.02 0.90 16 Total: -1.00 -73.32 334.51 5.33 -67.99 By element: Atomic # 1 Polarization: 5.54 SS G_CDS: 0.97 Total: 6.51 kcal Atomic # 6 Polarization: -1.12 SS G_CDS: 5.38 Total: 4.26 kcal Atomic # 7 Polarization: -68.90 SS G_CDS: -2.52 Total: -71.43 kcal Atomic # 8 Polarization: -53.97 SS G_CDS: -0.38 Total: -54.35 kcal Atomic # 14 Polarization: 45.13 SS G_CDS: 1.88 Total: 47.02 kcal Total: -73.32 5.33 -67.99 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000497188303.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -129.142 kcal (2) G-P(sol) polarization free energy of solvation -73.322 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -202.465 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.335 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.988 kcal (6) G-S(sol) free energy of system = (1) + (5) -197.130 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds