Wall clock time and date at job start Tue Mar 31 2020 06:17:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45197 * 1 3 3 C 1.34637 * 117.00046 * 2 1 4 4 O 1.21510 * 119.99930 * 359.97438 * 3 2 1 5 5 N 1.34771 * 120.00237 * 180.02562 * 3 2 1 6 6 C 1.46499 * 120.00212 * 179.97438 * 5 3 2 7 7 C 1.50697 * 109.47547 * 179.97438 * 6 5 3 8 8 O 1.20833 * 119.99747 * 0.02562 * 7 6 5 9 9 O 1.34230 * 120.00262 * 179.72203 * 7 6 5 10 10 C 1.45202 * 116.99836 * 180.27336 * 9 7 6 11 11 C 1.52994 * 109.46919 * 180.02562 * 10 9 7 12 12 H 1.09001 * 109.41651 * 305.00324 * 11 10 9 13 13 C 1.52963 * 109.41241 * 64.86242 * 11 10 9 14 14 C 1.53242 * 109.39587 * 183.77409 * 13 11 10 15 15 C 1.51273 * 108.48528 * 305.26544 * 14 13 11 16 16 C 1.37878 * 120.85136 * 231.41463 * 15 14 13 17 17 N 1.31507 * 120.00096 * 179.97438 * 16 15 14 18 18 Si 1.86805 * 119.99629 * 359.97438 * 16 15 14 19 19 H 1.48497 * 109.46946 * 90.00392 * 18 16 15 20 20 H 1.48499 * 109.46894 * 209.99783 * 18 16 15 21 21 H 1.48492 * 109.47353 * 330.00193 * 18 16 15 22 22 C 1.51265 * 118.29811 * 51.38963 * 15 14 13 23 23 C 1.52956 * 109.41584 * 185.14730 * 11 10 9 24 24 H 1.09003 * 109.47404 * 300.00122 * 1 2 3 25 25 H 1.08999 * 109.47405 * 60.00103 * 1 2 3 26 26 H 1.09004 * 109.47069 * 180.02562 * 1 2 3 27 27 H 0.97005 * 120.00065 * 359.97438 * 5 3 2 28 28 H 1.09004 * 109.47039 * 60.00081 * 6 5 3 29 29 H 1.09000 * 109.47206 * 300.00624 * 6 5 3 30 30 H 1.08998 * 109.47630 * 300.00638 * 10 9 7 31 31 H 1.09004 * 109.46770 * 60.01042 * 10 9 7 32 32 H 1.08992 * 109.48206 * 303.68024 * 13 11 10 33 33 H 1.09000 * 109.47935 * 63.72527 * 13 11 10 34 34 H 1.09004 * 109.61851 * 185.59102 * 14 13 11 35 35 H 1.09000 * 109.84711 * 65.07937 * 14 13 11 36 36 H 0.97005 * 120.00079 * 179.97438 * 17 16 15 37 37 H 1.09006 * 109.62624 * 188.93743 * 22 15 14 38 38 H 1.09004 * 109.78283 * 68.46742 * 22 15 14 39 39 H 1.09007 * 109.47969 * 296.27627 * 23 11 10 40 40 H 1.09001 * 109.48605 * 56.31235 * 23 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0632 1.1996 0.0000 4 8 1.4014 2.2187 -0.0005 5 7 3.4091 1.2702 -0.0005 6 6 4.0742 2.5755 -0.0011 7 6 5.5682 2.3782 -0.0010 8 8 6.0300 1.2616 -0.0009 9 8 6.3858 3.4427 -0.0071 10 6 7.8134 3.1773 -0.0127 11 6 8.5783 4.5023 -0.0185 12 1 8.2451 5.1093 -0.8603 13 6 8.3074 5.2515 1.2872 14 6 8.9971 6.6192 1.2418 15 6 10.4640 6.4068 0.9393 16 6 11.4388 6.9771 1.7302 17 7 12.7091 6.7811 1.4522 18 14 10.9550 8.0284 3.1966 19 1 10.8300 7.1696 4.4015 20 1 11.9964 9.0609 3.4305 21 1 9.6541 8.6904 2.9234 22 6 10.8339 5.5521 -0.2527 23 6 10.0762 4.2240 -0.1539 24 1 -0.3634 0.5139 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 3.9374 0.4567 -0.0005 28 1 3.7816 3.1327 0.8889 29 1 3.7809 3.1324 -0.8910 30 1 8.0807 2.6078 0.8773 31 1 8.0727 2.6038 -0.9026 32 1 7.2334 5.3910 1.4102 33 1 8.6976 4.6740 2.1253 34 1 8.8903 7.1151 2.2066 35 1 8.5479 7.2344 0.4622 36 1 13.3949 7.1827 2.0084 37 1 11.9074 5.3625 -0.2482 38 1 10.5566 6.0643 -1.1741 39 1 10.4236 3.6714 0.7191 40 1 10.2568 3.6347 -1.0529 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000497217200.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:17:56 Heat of formation + Delta-G solvation = -184.634906 kcal Electronic energy + Delta-G solvation = -22204.362745 eV Core-core repulsion = 18597.825930 eV Total energy + Delta-G solvation = -3606.536815 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 285.145 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.01886 -40.37801 -37.71808 -36.98990 -36.17519 -34.97914 -32.65978 -30.08622 -29.64641 -28.89969 -27.33018 -25.05921 -22.26698 -21.60726 -21.19841 -20.92414 -19.58027 -19.16092 -17.61138 -17.14295 -17.08770 -16.57163 -16.44228 -16.05081 -14.88644 -14.67083 -14.40182 -14.31515 -13.68171 -13.60075 -13.13354 -12.91156 -12.71368 -12.55419 -12.43103 -12.03847 -11.81269 -11.27245 -11.14946 -11.05686 -10.94524 -10.86544 -10.81578 -10.49020 -10.38884 -10.00037 -9.86330 -9.75708 -9.47600 -8.87858 -8.60593 -8.47002 -6.10504 -4.00833 1.56117 1.94448 2.42308 2.66380 3.26659 3.35662 3.37379 3.85177 4.38210 4.47190 4.77649 4.84506 4.88211 4.94389 5.11273 5.13173 5.26128 5.30896 5.59634 5.64313 5.89291 5.94156 5.99168 6.24122 6.42807 6.52033 6.66743 6.73327 6.89790 6.93652 6.99997 7.08904 7.15120 7.42404 7.53883 7.65524 7.72704 7.82525 7.90288 8.38948 8.96906 9.54739 10.99203 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.036656 B = 0.002755 C = 0.002624 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 763.675328 B =10160.407063 C =10666.608200 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.057 3.943 2 O -0.369 6.369 3 C 0.654 3.346 4 O -0.569 6.569 5 N -0.703 5.703 6 C 0.144 3.856 7 C 0.457 3.543 8 O -0.510 6.510 9 O -0.342 6.342 10 C 0.072 3.928 11 C -0.073 4.073 12 H 0.072 0.928 13 C -0.102 4.102 14 C -0.016 4.016 15 C -0.488 4.488 16 C 0.074 3.926 17 N -0.891 5.891 18 Si 0.888 3.112 19 H -0.279 1.279 20 H -0.291 1.291 21 H -0.267 1.267 22 C 0.011 3.989 23 C -0.101 4.101 24 H 0.065 0.935 25 H 0.065 0.935 26 H 0.104 0.896 27 H 0.419 0.581 28 H 0.118 0.882 29 H 0.118 0.882 30 H 0.070 0.930 31 H 0.067 0.933 32 H 0.039 0.961 33 H 0.050 0.950 34 H 0.029 0.971 35 H 0.018 0.982 36 H 0.264 0.736 37 H 0.058 0.942 38 H 0.004 0.996 39 H 0.053 0.947 40 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.089 -11.663 -2.871 22.554 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.038 4.038 2 O -0.283 6.283 3 C 0.406 3.594 4 O -0.458 6.458 5 N -0.366 5.366 6 C 0.020 3.980 7 C 0.300 3.700 8 O -0.399 6.399 9 O -0.257 6.257 10 C -0.001 4.001 11 C -0.091 4.091 12 H 0.090 0.910 13 C -0.140 4.140 14 C -0.054 4.054 15 C -0.507 4.507 16 C -0.128 4.128 17 N -0.529 5.529 18 Si 0.716 3.284 19 H -0.205 1.205 20 H -0.217 1.217 21 H -0.192 1.192 22 C -0.026 4.026 23 C -0.139 4.139 24 H 0.083 0.917 25 H 0.083 0.917 26 H 0.122 0.878 27 H 0.258 0.742 28 H 0.136 0.864 29 H 0.135 0.865 30 H 0.089 0.911 31 H 0.085 0.915 32 H 0.058 0.942 33 H 0.069 0.931 34 H 0.047 0.953 35 H 0.036 0.964 36 H 0.074 0.926 37 H 0.077 0.923 38 H 0.023 0.977 39 H 0.071 0.929 40 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges -19.088 -11.457 -2.812 22.440 hybrid contribution 0.071 0.067 0.867 0.872 sum -19.017 -11.390 -1.946 22.253 Atomic orbital electron populations 1.23248 0.73936 1.03676 1.02939 1.86252 1.24481 1.30592 1.86951 1.17859 0.82785 0.82405 0.76324 1.91037 1.64559 1.34772 1.55408 1.44208 1.03613 1.10246 1.78574 1.20555 0.85610 0.84748 1.07078 1.23211 0.90261 0.83592 0.72968 1.90673 1.77699 1.25673 1.45815 1.86494 1.20825 1.35806 1.82581 1.23625 0.73775 1.00517 1.02133 1.21150 0.95366 0.92441 1.00173 0.90981 1.21601 0.97859 0.99057 0.95515 1.19756 0.96191 0.92548 0.96899 1.20054 0.89237 1.29845 1.11532 1.24858 0.94671 0.95947 0.97358 1.69833 0.99491 1.44314 1.39259 0.86660 0.78114 0.80576 0.83012 1.20476 1.21699 1.19178 1.19358 0.97739 0.90507 0.95019 1.21640 0.92451 1.00813 0.99041 0.91651 0.91653 0.87783 0.74243 0.86434 0.86452 0.91145 0.91459 0.94233 0.93141 0.95292 0.96392 0.92628 0.92324 0.97719 0.92852 0.94875 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.35 10.56 101.05 1.07 1.42 16 2 O -0.37 -3.49 10.62 -40.32 -0.43 -3.92 16 3 C 0.65 7.26 8.75 54.05 0.47 7.73 16 4 O -0.57 -7.71 16.13 -19.28 -0.31 -8.02 16 5 N -0.70 -6.99 5.53 -66.47 -0.37 -7.36 16 6 C 0.14 1.38 6.27 -5.20 -0.03 1.35 16 7 C 0.46 5.64 8.03 36.00 0.29 5.93 16 8 O -0.51 -7.30 15.42 -18.76 -0.29 -7.59 16 9 O -0.34 -4.82 9.69 -39.26 -0.38 -5.20 16 10 C 0.07 1.11 4.83 37.15 0.18 1.29 16 11 C -0.07 -1.32 2.33 -90.66 -0.21 -1.53 16 12 H 0.07 1.32 8.14 -51.93 -0.42 0.89 16 13 C -0.10 -2.01 5.15 -26.63 -0.14 -2.14 16 14 C -0.02 -0.37 5.60 -27.48 -0.15 -0.53 16 15 C -0.49 -12.61 5.51 -98.92 -0.55 -13.16 16 16 C 0.07 2.00 5.46 -17.82 -0.10 1.91 16 17 N -0.89 -25.43 12.73 55.43 0.71 -24.72 16 18 Si 0.89 21.00 27.27 -169.99 -4.64 16.36 16 19 H -0.28 -6.54 7.11 56.52 0.40 -6.13 16 20 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 21 H -0.27 -6.12 6.46 56.52 0.37 -5.75 16 22 C 0.01 0.27 5.97 -27.49 -0.16 0.10 16 23 C -0.10 -2.04 5.21 -26.64 -0.14 -2.18 16 24 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 25 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 26 H 0.10 0.34 8.14 -51.93 -0.42 -0.08 16 27 H 0.42 3.98 7.55 -40.82 -0.31 3.67 16 28 H 0.12 1.02 8.14 -51.93 -0.42 0.60 16 29 H 0.12 0.99 8.14 -51.93 -0.42 0.57 16 30 H 0.07 1.09 8.13 -51.93 -0.42 0.67 16 31 H 0.07 0.98 8.13 -51.93 -0.42 0.56 16 32 H 0.04 0.70 7.72 -51.93 -0.40 0.30 16 33 H 0.05 1.01 8.14 -51.93 -0.42 0.58 16 34 H 0.03 0.66 4.78 -51.93 -0.25 0.41 16 35 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 36 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 37 H 0.06 1.56 7.07 -51.93 -0.37 1.19 16 38 H 0.00 0.11 8.14 -51.93 -0.42 -0.32 16 39 H 0.05 1.11 8.14 -51.92 -0.42 0.68 16 40 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 LS Contribution 332.98 15.07 5.02 5.02 Total: -1.00 -30.82 332.98 -6.15 -36.97 By element: Atomic # 1 Polarization: 4.26 SS G_CDS: -5.99 Total: -1.73 kcal Atomic # 6 Polarization: -0.33 SS G_CDS: 0.53 Total: 0.20 kcal Atomic # 7 Polarization: -32.42 SS G_CDS: 0.34 Total: -32.08 kcal Atomic # 8 Polarization: -23.33 SS G_CDS: -1.41 Total: -24.74 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -4.64 Total: 16.36 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -30.82 -6.15 -36.97 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000497217200.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -147.664 kcal (2) G-P(sol) polarization free energy of solvation -30.821 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -178.485 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.150 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.971 kcal (6) G-S(sol) free energy of system = (1) + (5) -184.635 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds