Wall clock time and date at job start Tue Mar 31 2020 06:17:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45197 * 1 3 3 C 1.34637 * 117.00046 * 2 1 4 4 O 1.21510 * 119.99930 * 359.97438 * 3 2 1 5 5 N 1.34771 * 120.00237 * 180.02562 * 3 2 1 6 6 C 1.46499 * 120.00212 * 179.97438 * 5 3 2 7 7 C 1.50697 * 109.47547 * 179.97438 * 6 5 3 8 8 O 1.20833 * 119.99747 * 0.02562 * 7 6 5 9 9 O 1.34230 * 120.00262 * 179.72203 * 7 6 5 10 10 C 1.45202 * 116.99836 * 180.27336 * 9 7 6 11 11 C 1.52994 * 109.46919 * 180.02562 * 10 9 7 12 12 H 1.09001 * 109.41651 * 305.00324 * 11 10 9 13 13 C 1.52963 * 109.41241 * 64.86242 * 11 10 9 14 14 C 1.53242 * 109.39587 * 183.77409 * 13 11 10 15 15 C 1.51273 * 108.48528 * 305.26544 * 14 13 11 16 16 C 1.37878 * 120.85136 * 231.41463 * 15 14 13 17 17 N 1.31507 * 120.00096 * 179.97438 * 16 15 14 18 18 Si 1.86805 * 119.99629 * 359.97438 * 16 15 14 19 19 H 1.48497 * 109.46946 * 90.00392 * 18 16 15 20 20 H 1.48499 * 109.46894 * 209.99783 * 18 16 15 21 21 H 1.48492 * 109.47353 * 330.00193 * 18 16 15 22 22 C 1.51265 * 118.29811 * 51.38963 * 15 14 13 23 23 C 1.52956 * 109.41584 * 185.14730 * 11 10 9 24 24 H 1.09003 * 109.47404 * 300.00122 * 1 2 3 25 25 H 1.08999 * 109.47405 * 60.00103 * 1 2 3 26 26 H 1.09004 * 109.47069 * 180.02562 * 1 2 3 27 27 H 0.97005 * 120.00065 * 359.97438 * 5 3 2 28 28 H 1.09004 * 109.47039 * 60.00081 * 6 5 3 29 29 H 1.09000 * 109.47206 * 300.00624 * 6 5 3 30 30 H 1.08998 * 109.47630 * 300.00638 * 10 9 7 31 31 H 1.09004 * 109.46770 * 60.01042 * 10 9 7 32 32 H 1.08992 * 109.48206 * 303.68024 * 13 11 10 33 33 H 1.09000 * 109.47935 * 63.72527 * 13 11 10 34 34 H 1.09004 * 109.61851 * 185.59102 * 14 13 11 35 35 H 1.09000 * 109.84711 * 65.07937 * 14 13 11 36 36 H 0.97005 * 120.00079 * 179.97438 * 17 16 15 37 37 H 1.09006 * 109.62624 * 188.93743 * 22 15 14 38 38 H 1.09004 * 109.78283 * 68.46742 * 22 15 14 39 39 H 1.09007 * 109.47969 * 296.27627 * 23 11 10 40 40 H 1.09001 * 109.48605 * 56.31235 * 23 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0632 1.1996 0.0000 4 8 1.4014 2.2187 -0.0005 5 7 3.4091 1.2702 -0.0005 6 6 4.0742 2.5755 -0.0011 7 6 5.5682 2.3782 -0.0010 8 8 6.0300 1.2616 -0.0009 9 8 6.3858 3.4427 -0.0071 10 6 7.8134 3.1773 -0.0127 11 6 8.5783 4.5023 -0.0185 12 1 8.2451 5.1093 -0.8603 13 6 8.3074 5.2515 1.2872 14 6 8.9971 6.6192 1.2418 15 6 10.4640 6.4068 0.9393 16 6 11.4388 6.9771 1.7302 17 7 12.7091 6.7811 1.4522 18 14 10.9550 8.0284 3.1966 19 1 10.8300 7.1696 4.4015 20 1 11.9964 9.0609 3.4305 21 1 9.6541 8.6904 2.9234 22 6 10.8339 5.5521 -0.2527 23 6 10.0762 4.2240 -0.1539 24 1 -0.3634 0.5139 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 3.9374 0.4567 -0.0005 28 1 3.7816 3.1327 0.8889 29 1 3.7809 3.1324 -0.8910 30 1 8.0807 2.6078 0.8773 31 1 8.0727 2.6038 -0.9026 32 1 7.2334 5.3910 1.4102 33 1 8.6976 4.6740 2.1253 34 1 8.8903 7.1151 2.2066 35 1 8.5479 7.2344 0.4622 36 1 13.3949 7.1827 2.0084 37 1 11.9074 5.3625 -0.2482 38 1 10.5566 6.0643 -1.1741 39 1 10.4236 3.6714 0.7191 40 1 10.2568 3.6347 -1.0529 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000497217200.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:17:56 Heat of formation + Delta-G solvation = -204.832623 kcal Electronic energy + Delta-G solvation = -22205.238583 eV Core-core repulsion = 18597.825930 eV Total energy + Delta-G solvation = -3607.412654 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 285.145 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.93168 -41.30204 -39.08311 -37.91271 -37.38819 -35.84653 -34.52031 -31.68737 -31.16025 -30.01875 -28.02247 -26.53566 -23.63678 -23.01506 -22.63525 -21.96322 -20.87968 -20.30260 -18.58939 -18.15078 -17.97053 -17.82325 -17.44753 -17.35602 -16.38598 -15.79134 -15.53821 -15.28103 -14.98131 -14.77683 -14.49500 -14.46905 -14.04636 -13.89075 -13.62796 -13.31500 -12.96661 -12.88256 -12.62860 -12.58874 -12.40577 -11.92873 -11.84181 -11.82079 -11.77382 -11.67224 -11.41955 -11.26268 -10.68001 -10.53836 -10.51631 -10.41670 -8.14788 -6.07734 0.77988 0.98188 1.38881 1.42385 1.50867 1.59870 1.73550 2.42560 3.12172 3.15036 3.46575 3.90622 3.97647 4.16787 4.21288 4.24891 4.36164 4.39529 4.49409 4.53224 4.70111 4.74426 4.80785 4.89556 5.03469 5.08691 5.16467 5.24376 5.30419 5.32940 5.41761 5.50328 5.65180 5.69104 5.81281 5.91923 6.14795 6.39676 6.52406 6.99634 7.11258 7.50047 8.96245 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.036656 B = 0.002755 C = 0.002624 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 763.675328 B =10160.407063 C =10666.608200 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.048 3.952 2 O -0.373 6.373 3 C 0.654 3.346 4 O -0.597 6.597 5 N -0.699 5.699 6 C 0.149 3.851 7 C 0.464 3.536 8 O -0.529 6.529 9 O -0.346 6.346 10 C 0.082 3.918 11 C -0.066 4.066 12 H 0.074 0.926 13 C -0.098 4.098 14 C -0.021 4.021 15 C -0.496 4.496 16 C 0.017 3.983 17 N -0.934 5.934 18 Si 0.940 3.060 19 H -0.275 1.275 20 H -0.295 1.295 21 H -0.253 1.253 22 C 0.005 3.995 23 C -0.094 4.094 24 H 0.064 0.936 25 H 0.064 0.936 26 H 0.136 0.864 27 H 0.422 0.578 28 H 0.132 0.868 29 H 0.134 0.866 30 H 0.070 0.930 31 H 0.079 0.921 32 H 0.064 0.936 33 H 0.044 0.956 34 H 0.028 0.972 35 H 0.021 0.979 36 H 0.261 0.739 37 H 0.024 0.976 38 H 0.002 0.998 39 H 0.043 0.957 40 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.632 -12.466 -2.766 25.120 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.045 4.045 2 O -0.287 6.287 3 C 0.407 3.593 4 O -0.488 6.488 5 N -0.362 5.362 6 C 0.026 3.974 7 C 0.308 3.692 8 O -0.419 6.419 9 O -0.261 6.261 10 C 0.008 3.992 11 C -0.085 4.085 12 H 0.092 0.908 13 C -0.136 4.136 14 C -0.058 4.058 15 C -0.516 4.516 16 C -0.181 4.181 17 N -0.574 5.574 18 Si 0.767 3.233 19 H -0.200 1.200 20 H -0.222 1.222 21 H -0.177 1.177 22 C -0.032 4.032 23 C -0.132 4.132 24 H 0.083 0.917 25 H 0.083 0.917 26 H 0.154 0.846 27 H 0.261 0.739 28 H 0.149 0.851 29 H 0.152 0.848 30 H 0.088 0.912 31 H 0.097 0.903 32 H 0.083 0.917 33 H 0.062 0.938 34 H 0.047 0.953 35 H 0.040 0.960 36 H 0.070 0.930 37 H 0.043 0.957 38 H 0.020 0.980 39 H 0.061 0.939 40 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -21.659 -12.277 -2.709 25.044 hybrid contribution 0.814 0.269 0.758 1.144 sum -20.846 -12.009 -1.952 24.136 Atomic orbital electron populations 1.23566 0.72243 1.05803 1.02908 1.86268 1.26156 1.29664 1.86583 1.17953 0.82892 0.82506 0.75920 1.91018 1.65166 1.35745 1.56844 1.44210 1.03391 1.10527 1.78114 1.20647 0.83401 0.84851 1.08497 1.23601 0.90915 0.82794 0.71904 1.90676 1.78153 1.26346 1.46758 1.86467 1.20115 1.36559 1.82933 1.23291 0.74585 0.98536 1.02761 1.20957 0.94171 0.93891 0.99436 0.90778 1.21522 0.98913 0.97024 0.96111 1.19804 0.94477 0.94669 0.96876 1.20717 0.90949 1.28672 1.11232 1.25638 0.94717 0.97557 1.00186 1.69976 1.00508 1.46257 1.40705 0.85814 0.78145 0.79154 0.80234 1.20049 1.22169 1.17694 1.19344 0.96405 0.92866 0.94616 1.21449 0.93609 0.98336 0.99757 0.91745 0.91670 0.84629 0.73943 0.85071 0.84842 0.91177 0.90316 0.91735 0.93766 0.95343 0.96019 0.92986 0.95708 0.97991 0.93865 0.92543 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.51 10.56 113.37 1.20 1.71 16 2 O -0.37 -6.39 10.62 -55.47 -0.59 -6.98 16 3 C 0.65 13.35 8.75 129.79 1.14 14.49 16 4 O -0.60 -15.21 16.13 19.81 0.32 -14.89 16 5 N -0.70 -12.40 5.53 -594.63 -3.29 -15.69 16 6 C 0.15 2.46 6.27 85.63 0.54 2.99 16 7 C 0.46 10.16 8.03 71.23 0.57 10.73 16 8 O -0.53 -13.93 15.42 21.94 0.34 -13.59 16 9 O -0.35 -8.65 9.69 -51.41 -0.50 -9.15 16 10 C 0.08 2.28 4.83 71.98 0.35 2.63 16 11 C -0.07 -2.24 2.33 -10.82 -0.03 -2.26 16 12 H 0.07 2.51 8.14 -2.39 -0.02 2.49 16 13 C -0.10 -3.60 5.15 30.66 0.16 -3.44 16 14 C -0.02 -0.91 5.60 30.11 0.17 -0.74 16 15 C -0.50 -25.70 5.51 -16.17 -0.09 -25.79 16 16 C 0.02 0.91 5.46 84.66 0.46 1.37 16 17 N -0.93 -54.96 12.73 21.45 0.27 -54.69 16 18 Si 0.94 43.18 27.27 68.60 1.87 45.05 16 19 H -0.27 -12.33 7.11 99.48 0.71 -11.62 16 20 H -0.29 -13.63 7.11 99.48 0.71 -12.92 16 21 H -0.25 -10.91 6.46 99.48 0.64 -10.26 16 22 C 0.01 0.25 5.97 30.10 0.18 0.43 16 23 C -0.09 -3.66 5.21 30.65 0.16 -3.51 16 24 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 25 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 26 H 0.14 0.51 8.14 -2.38 -0.02 0.50 16 27 H 0.42 7.17 7.55 -92.70 -0.70 6.47 16 28 H 0.13 1.88 8.14 -2.38 -0.02 1.86 16 29 H 0.13 1.84 8.14 -2.39 -0.02 1.82 16 30 H 0.07 1.99 8.13 -2.39 -0.02 1.97 16 31 H 0.08 2.05 8.13 -2.38 -0.02 2.03 16 32 H 0.06 2.06 7.72 -2.39 -0.02 2.05 16 33 H 0.04 1.67 8.14 -2.39 -0.02 1.65 16 34 H 0.03 1.23 4.78 -2.38 -0.01 1.22 16 35 H 0.02 0.93 8.14 -2.39 -0.02 0.91 16 36 H 0.26 14.67 8.31 -92.70 -0.77 13.90 16 37 H 0.02 1.35 7.07 -2.38 -0.02 1.34 16 38 H 0.00 0.08 8.14 -2.38 -0.02 0.06 16 39 H 0.04 1.76 8.14 -2.38 -0.02 1.74 16 40 H 0.06 1.93 8.14 -2.39 -0.02 1.91 16 Total: -1.00 -66.37 332.98 3.52 -62.85 By element: Atomic # 1 Polarization: 8.19 SS G_CDS: 0.29 Total: 8.48 kcal Atomic # 6 Polarization: -6.20 SS G_CDS: 4.80 Total: -1.39 kcal Atomic # 7 Polarization: -67.36 SS G_CDS: -3.02 Total: -70.37 kcal Atomic # 8 Polarization: -44.18 SS G_CDS: -0.43 Total: -44.60 kcal Atomic # 14 Polarization: 43.18 SS G_CDS: 1.87 Total: 45.05 kcal Total: -66.37 3.52 -62.85 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000497217200.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -141.983 kcal (2) G-P(sol) polarization free energy of solvation -66.365 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -208.348 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.516 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.850 kcal (6) G-S(sol) free energy of system = (1) + (5) -204.833 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds