Wall clock time and date at job start Tue Mar 31 2020 06:19:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86807 * 119.99904 * 2 1 4 4 H 1.48497 * 109.47052 * 180.02562 * 3 2 1 5 5 H 1.48497 * 109.47306 * 300.00515 * 3 2 1 6 6 H 1.48508 * 109.46873 * 60.00603 * 3 2 1 7 7 C 1.37871 * 120.00101 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00117 * 180.95521 * 7 2 1 9 9 C 1.50702 * 120.00137 * 0.95095 * 7 2 1 10 10 C 1.52999 * 115.54932 * 325.11892 * 9 7 2 11 11 N 1.46506 * 109.46701 * 305.48906 * 10 9 7 12 12 C 1.34777 * 119.99540 * 184.70081 * 11 10 9 13 13 O 1.21551 * 120.00288 * 5.47406 * 12 11 10 14 14 C 1.47843 * 119.99720 * 185.46796 * 12 11 10 15 15 C 1.39495 * 120.04560 * 354.85966 * 14 12 11 16 16 C 1.37927 * 119.76891 * 179.97438 * 15 14 12 17 17 C 1.38256 * 120.10081 * 359.97438 * 16 15 14 18 18 C 1.38423 * 120.59109 * 0.02562 * 17 16 15 19 19 C 1.38211 * 119.90145 * 359.95274 * 18 17 16 20 20 C 1.51354 * 109.86788 * 180.02562 * 19 18 17 21 21 C 1.54352 * 105.14922 * 342.85162 * 20 19 18 22 22 C 1.51397 * 130.47106 * 180.02562 * 18 17 16 23 23 C 1.53004 * 117.49550 * 110.78490 * 9 7 2 24 24 C 1.52998 * 117.49775 * 179.44281 * 9 7 2 25 25 H 0.97000 * 120.00091 * 4.99531 * 1 2 3 26 26 H 1.08996 * 109.46717 * 185.49231 * 10 9 7 27 27 H 1.08997 * 109.47281 * 65.48706 * 10 9 7 28 28 H 0.96994 * 120.00295 * 4.70246 * 11 10 9 29 29 H 1.08007 * 120.11291 * 359.96074 * 15 14 12 30 30 H 1.08000 * 119.95146 * 180.02562 * 16 15 14 31 31 H 1.08002 * 119.73766 * 180.02562 * 17 16 15 32 32 H 1.08994 * 110.30485 * 223.92924 * 20 19 18 33 33 H 1.09007 * 110.38918 * 101.81445 * 20 19 18 34 34 H 1.08998 * 110.82950 * 268.08830 * 21 20 19 35 35 H 1.08999 * 110.99748 * 144.59529 * 21 20 19 36 36 H 1.09001 * 110.30915 * 78.15063 * 22 18 17 37 37 H 1.08998 * 110.30355 * 316.09500 * 22 18 17 38 38 H 1.08998 * 117.49577 * 215.00397 * 23 9 7 39 39 H 1.08997 * 117.49809 * 0.02738 * 23 9 7 40 40 H 1.09000 * 117.50495 * 359.97438 * 24 9 7 41 41 H 1.09003 * 117.49550 * 144.97771 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8903 2.3966 -1.2124 6 1 1.8904 2.3964 1.2127 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1941 0.0151 9 6 1.2512 -2.4990 -0.0228 10 6 -0.0706 -2.5112 0.7476 11 7 0.1644 -2.0781 2.1273 12 6 -0.8436 -2.1010 3.0217 13 8 -1.9200 -2.5733 2.7124 14 6 -0.6399 -1.5517 4.3791 15 6 0.6232 -1.1079 4.7708 16 6 0.8066 -0.5960 6.0383 17 6 -0.2581 -0.5227 6.9173 18 6 -1.5155 -0.9603 6.5387 19 6 -1.7133 -1.4750 5.2713 20 6 -3.1615 -1.8803 5.1009 21 6 -3.7281 -1.9647 6.5342 22 6 -2.8201 -0.9843 7.3065 23 6 1.3334 -3.3405 -1.2980 24 6 2.0735 -3.7892 -0.0354 25 1 -0.4850 0.8368 -0.0731 26 1 -0.4811 -3.5209 0.7487 27 1 -0.7764 -1.8324 0.2690 28 1 1.0454 -1.7748 2.3971 29 1 1.4547 -1.1652 4.0838 30 1 1.7832 -0.2512 6.3445 31 1 -0.1079 -0.1205 7.9083 32 1 -3.2273 -2.8514 4.6103 33 1 -3.7009 -1.1286 4.5245 34 1 -3.6319 -2.9757 6.9301 35 1 -4.7669 -1.6359 6.5635 36 1 -3.2663 0.0100 7.3253 37 1 -2.6545 -1.3431 8.3223 38 1 0.4458 -3.9027 -1.5881 39 1 1.9327 -2.9503 -2.1206 40 1 3.1593 -3.6942 -0.0281 41 1 1.6729 -4.6466 0.5055 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000519061480.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:19:41 Heat of formation + Delta-G solvation = 5.939985 kcal Electronic energy + Delta-G solvation = -22429.199285 eV Core-core repulsion = 19274.068432 eV Total energy + Delta-G solvation = -3155.130853 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 285.147 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.17835 -38.28923 -36.59618 -35.53007 -32.99866 -32.20155 -31.26920 -28.85909 -27.42945 -25.95617 -25.29037 -23.06450 -21.28787 -21.13418 -20.69699 -19.34296 -19.14035 -17.08921 -16.09577 -15.77326 -15.48264 -15.04609 -14.83954 -14.47608 -14.21508 -14.02396 -13.51803 -13.01830 -12.90316 -12.69726 -12.38746 -12.37347 -11.76129 -11.68221 -11.40040 -11.13647 -11.11744 -11.03474 -11.00451 -10.76980 -10.74077 -10.52460 -10.27484 -9.70042 -9.10014 -8.91062 -8.86857 -8.63212 -8.35672 -8.29372 -7.79200 -6.03471 -4.22989 1.20969 1.52697 3.18630 3.29175 3.31187 3.44719 4.10049 4.26399 4.34365 4.50362 4.70742 4.93381 5.07037 5.12444 5.18053 5.26586 5.40978 5.47369 5.64173 5.68892 5.82471 5.85858 5.92784 6.01218 6.06288 6.22220 6.30006 6.30864 6.39222 6.53069 6.55527 6.60383 6.62065 6.72001 6.77117 6.89921 7.08104 7.11638 7.25290 7.55741 7.65286 7.94906 8.29062 8.58623 8.80986 9.18554 9.40584 10.86278 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.017777 B = 0.005262 C = 0.004659 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1574.676647 B = 5319.389246 C = 6008.456912 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.868 5.868 2 C 0.074 3.926 3 Si 0.891 3.109 4 H -0.272 1.272 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.496 4.496 8 H 0.062 0.938 9 C 0.034 3.966 10 C 0.164 3.836 11 N -0.676 5.676 12 C 0.544 3.456 13 O -0.560 6.560 14 C -0.109 4.109 15 C -0.086 4.086 16 C -0.130 4.130 17 C -0.093 4.093 18 C -0.116 4.116 19 C -0.038 4.038 20 C -0.080 4.080 21 C -0.123 4.123 22 C -0.078 4.078 23 C -0.197 4.197 24 C -0.212 4.212 25 H 0.262 0.738 26 H 0.024 0.976 27 H 0.114 0.886 28 H 0.398 0.602 29 H 0.132 0.868 30 H 0.126 0.874 31 H 0.118 0.882 32 H 0.091 0.909 33 H 0.081 0.919 34 H 0.070 0.930 35 H 0.074 0.926 36 H 0.077 0.923 37 H 0.071 0.929 38 H 0.067 0.933 39 H 0.079 0.921 40 H 0.075 0.925 41 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.230 -1.020 13.140 13.367 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.504 5.504 2 C -0.131 4.131 3 Si 0.719 3.281 4 H -0.197 1.197 5 H -0.208 1.208 6 H -0.208 1.208 7 C -0.533 4.533 8 H 0.080 0.920 9 C 0.034 3.966 10 C 0.041 3.959 11 N -0.322 5.322 12 C 0.330 3.670 13 O -0.441 6.441 14 C -0.112 4.112 15 C -0.105 4.105 16 C -0.148 4.148 17 C -0.112 4.112 18 C -0.116 4.116 19 C -0.039 4.039 20 C -0.116 4.116 21 C -0.160 4.160 22 C -0.115 4.115 23 C -0.236 4.236 24 C -0.249 4.249 25 H 0.073 0.927 26 H 0.042 0.958 27 H 0.132 0.868 28 H 0.233 0.767 29 H 0.149 0.851 30 H 0.144 0.856 31 H 0.136 0.864 32 H 0.109 0.891 33 H 0.100 0.900 34 H 0.088 0.912 35 H 0.093 0.907 36 H 0.096 0.904 37 H 0.090 0.910 38 H 0.085 0.915 39 H 0.098 0.902 40 H 0.094 0.906 41 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -3.142 -1.203 12.925 13.356 hybrid contribution 1.155 1.140 -0.121 1.627 sum -1.987 -0.063 12.804 12.957 Atomic orbital electron populations 1.69864 1.05712 1.26684 1.48129 1.25005 0.94854 0.99089 0.94110 0.86538 0.80102 0.83610 0.77865 1.19679 1.20844 1.20835 1.20563 0.92520 0.88522 1.51742 0.92003 1.19252 0.93215 0.89713 0.94444 1.21123 0.98123 0.96829 0.79823 1.45634 1.12165 1.63552 1.10889 1.18121 0.84641 0.79840 0.84372 1.90654 1.25862 1.47793 1.79829 1.19848 0.93506 1.02831 0.94987 1.21356 0.96308 0.96441 0.96398 1.20934 0.98889 1.01217 0.93806 1.20639 0.91673 0.99358 0.99486 1.20575 0.94899 1.00506 0.95628 1.20621 0.95108 0.95434 0.92701 1.21075 0.90572 1.03579 0.96419 1.22354 0.98890 0.99406 0.95393 1.21010 0.91855 1.00178 0.98435 1.22932 1.01303 1.06614 0.92757 1.22955 0.98038 1.00580 1.03344 0.92703 0.95784 0.86815 0.76651 0.85068 0.85560 0.86364 0.89077 0.90030 0.91160 0.90704 0.90446 0.91020 0.91450 0.90211 0.90632 0.91346 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -22.95 10.22 55.43 0.57 -22.39 16 2 C 0.07 1.87 5.28 -17.82 -0.09 1.77 16 3 Si 0.89 19.92 29.54 -169.99 -5.02 14.90 16 4 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 5 H -0.28 -6.41 7.11 56.52 0.40 -6.00 16 6 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 7 C -0.50 -12.46 8.31 -34.44 -0.29 -12.75 16 8 H 0.06 1.56 7.81 -52.48 -0.41 1.15 16 9 C 0.03 0.81 2.06 -155.66 -0.32 0.49 16 10 C 0.16 3.92 4.63 -4.04 -0.02 3.90 16 11 N -0.68 -14.92 5.12 -61.25 -0.31 -15.24 16 12 C 0.54 11.89 7.76 -12.33 -0.10 11.79 16 13 O -0.56 -13.49 14.65 5.32 0.08 -13.41 16 14 C -0.11 -2.02 5.88 -104.92 -0.62 -2.64 16 15 C -0.09 -1.40 9.53 -39.23 -0.37 -1.77 16 16 C -0.13 -1.77 10.03 -39.69 -0.40 -2.16 16 17 C -0.09 -1.20 10.02 -39.51 -0.40 -1.60 16 18 C -0.12 -1.63 6.14 -104.22 -0.64 -2.27 16 19 C -0.04 -0.63 6.04 -103.74 -0.63 -1.26 16 20 C -0.08 -1.22 5.65 -26.85 -0.15 -1.37 16 21 C -0.12 -1.38 7.08 -25.32 -0.18 -1.56 16 22 C -0.08 -0.85 6.76 -26.84 -0.18 -1.03 16 23 C -0.20 -4.32 9.96 -26.69 -0.27 -4.58 16 24 C -0.21 -4.43 9.92 -26.69 -0.26 -4.69 16 25 H 0.26 6.80 8.32 -40.82 -0.34 6.46 16 26 H 0.02 0.57 8.05 -51.93 -0.42 0.15 16 27 H 0.11 3.08 5.90 -51.93 -0.31 2.77 16 28 H 0.40 8.38 5.99 -40.82 -0.24 8.14 16 29 H 0.13 2.03 6.41 -52.48 -0.34 1.70 16 30 H 0.13 1.36 8.06 -52.49 -0.42 0.94 16 31 H 0.12 1.17 8.06 -52.49 -0.42 0.75 16 32 H 0.09 1.54 7.08 -51.93 -0.37 1.17 16 33 H 0.08 1.28 8.14 -51.93 -0.42 0.86 16 34 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 35 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 36 H 0.08 0.78 8.14 -51.93 -0.42 0.35 16 37 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 38 H 0.07 1.40 8.14 -51.93 -0.42 0.97 16 39 H 0.08 1.73 8.14 -51.93 -0.42 1.31 16 40 H 0.08 1.53 8.14 -51.93 -0.42 1.10 16 41 H 0.07 1.35 8.14 -51.93 -0.42 0.93 16 LS Contribution 334.89 15.07 5.05 5.05 Total: -1.00 -28.36 334.89 -10.42 -38.78 By element: Atomic # 1 Polarization: 17.90 SS G_CDS: -5.87 Total: 12.04 kcal Atomic # 6 Polarization: -14.82 SS G_CDS: -4.91 Total: -19.73 kcal Atomic # 7 Polarization: -37.88 SS G_CDS: 0.25 Total: -37.62 kcal Atomic # 8 Polarization: -13.49 SS G_CDS: 0.08 Total: -13.41 kcal Atomic # 14 Polarization: 19.92 SS G_CDS: -5.02 Total: 14.90 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -28.36 -10.42 -38.78 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000519061480.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.718 kcal (2) G-P(sol) polarization free energy of solvation -28.355 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.363 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.423 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.778 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.940 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds