Wall clock time and date at job start Tue Mar 31 2020 06:19:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86807 * 119.99904 * 2 1 4 4 H 1.48497 * 109.47052 * 180.02562 * 3 2 1 5 5 H 1.48497 * 109.47306 * 300.00515 * 3 2 1 6 6 H 1.48508 * 109.46873 * 60.00603 * 3 2 1 7 7 C 1.37871 * 120.00101 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00117 * 180.95521 * 7 2 1 9 9 C 1.50702 * 120.00137 * 0.95095 * 7 2 1 10 10 C 1.52999 * 115.54932 * 325.11892 * 9 7 2 11 11 N 1.46506 * 109.46701 * 305.48906 * 10 9 7 12 12 C 1.34777 * 119.99540 * 184.70081 * 11 10 9 13 13 O 1.21551 * 120.00288 * 5.47406 * 12 11 10 14 14 C 1.47843 * 119.99720 * 185.46796 * 12 11 10 15 15 C 1.39495 * 120.04560 * 354.85966 * 14 12 11 16 16 C 1.37927 * 119.76891 * 179.97438 * 15 14 12 17 17 C 1.38256 * 120.10081 * 359.97438 * 16 15 14 18 18 C 1.38423 * 120.59109 * 0.02562 * 17 16 15 19 19 C 1.38211 * 119.90145 * 359.95274 * 18 17 16 20 20 C 1.51354 * 109.86788 * 180.02562 * 19 18 17 21 21 C 1.54352 * 105.14922 * 342.85162 * 20 19 18 22 22 C 1.51397 * 130.47106 * 180.02562 * 18 17 16 23 23 C 1.53004 * 117.49550 * 110.78490 * 9 7 2 24 24 C 1.52998 * 117.49775 * 179.44281 * 9 7 2 25 25 H 0.97000 * 120.00091 * 4.99531 * 1 2 3 26 26 H 1.08996 * 109.46717 * 185.49231 * 10 9 7 27 27 H 1.08997 * 109.47281 * 65.48706 * 10 9 7 28 28 H 0.96994 * 120.00295 * 4.70246 * 11 10 9 29 29 H 1.08007 * 120.11291 * 359.96074 * 15 14 12 30 30 H 1.08000 * 119.95146 * 180.02562 * 16 15 14 31 31 H 1.08002 * 119.73766 * 180.02562 * 17 16 15 32 32 H 1.08994 * 110.30485 * 223.92924 * 20 19 18 33 33 H 1.09007 * 110.38918 * 101.81445 * 20 19 18 34 34 H 1.08998 * 110.82950 * 268.08830 * 21 20 19 35 35 H 1.08999 * 110.99748 * 144.59529 * 21 20 19 36 36 H 1.09001 * 110.30915 * 78.15063 * 22 18 17 37 37 H 1.08998 * 110.30355 * 316.09500 * 22 18 17 38 38 H 1.08998 * 117.49577 * 215.00397 * 23 9 7 39 39 H 1.08997 * 117.49809 * 0.02738 * 23 9 7 40 40 H 1.09000 * 117.50495 * 359.97438 * 24 9 7 41 41 H 1.09003 * 117.49550 * 144.97771 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8903 2.3966 -1.2124 6 1 1.8904 2.3964 1.2127 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1941 0.0151 9 6 1.2512 -2.4990 -0.0228 10 6 -0.0706 -2.5112 0.7476 11 7 0.1644 -2.0781 2.1273 12 6 -0.8436 -2.1010 3.0217 13 8 -1.9200 -2.5733 2.7124 14 6 -0.6399 -1.5517 4.3791 15 6 0.6232 -1.1079 4.7708 16 6 0.8066 -0.5960 6.0383 17 6 -0.2581 -0.5227 6.9173 18 6 -1.5155 -0.9603 6.5387 19 6 -1.7133 -1.4750 5.2713 20 6 -3.1615 -1.8803 5.1009 21 6 -3.7281 -1.9647 6.5342 22 6 -2.8201 -0.9843 7.3065 23 6 1.3334 -3.3405 -1.2980 24 6 2.0735 -3.7892 -0.0354 25 1 -0.4850 0.8368 -0.0731 26 1 -0.4811 -3.5209 0.7487 27 1 -0.7764 -1.8324 0.2690 28 1 1.0454 -1.7748 2.3971 29 1 1.4547 -1.1652 4.0838 30 1 1.7832 -0.2512 6.3445 31 1 -0.1079 -0.1205 7.9083 32 1 -3.2273 -2.8514 4.6103 33 1 -3.7009 -1.1286 4.5245 34 1 -3.6319 -2.9757 6.9301 35 1 -4.7669 -1.6359 6.5635 36 1 -3.2663 0.0100 7.3253 37 1 -2.6545 -1.3431 8.3223 38 1 0.4458 -3.9027 -1.5881 39 1 1.9327 -2.9503 -2.1206 40 1 3.1593 -3.6942 -0.0281 41 1 1.6729 -4.6466 0.5055 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000519061480.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:19:41 Heat of formation + Delta-G solvation = -8.227001 kcal Electronic energy + Delta-G solvation = -22429.813612 eV Core-core repulsion = 19274.068432 eV Total energy + Delta-G solvation = -3155.745180 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 285.147 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.45095 -39.87390 -38.38742 -36.63858 -34.75262 -34.13457 -32.49920 -29.93342 -28.68904 -27.72781 -27.04376 -24.38979 -22.99153 -22.25079 -21.88790 -21.13406 -20.72598 -18.70962 -17.74743 -17.11679 -16.78240 -16.56546 -16.29300 -15.94116 -15.86176 -15.46133 -15.07696 -14.68734 -14.12177 -13.93797 -13.79219 -13.69449 -13.44760 -13.26617 -12.95743 -12.68042 -12.59041 -12.29185 -12.27226 -12.15589 -12.06810 -11.99632 -11.73320 -11.52487 -10.95784 -10.75846 -10.61309 -10.16852 -9.92910 -9.55808 -9.47122 -7.97364 -6.22629 -0.04260 0.38815 1.39835 1.45255 1.54399 2.01838 2.39462 2.51221 2.91945 3.05940 3.47428 3.61664 3.67676 3.94066 4.05186 4.18187 4.21325 4.24745 4.32937 4.50441 4.51739 4.62469 4.73662 4.77835 4.79898 4.90165 4.93234 4.96259 5.05708 5.10179 5.15614 5.21407 5.28069 5.32447 5.42887 5.48569 5.50161 5.57438 5.62456 5.84617 5.94435 6.00088 6.35108 6.75208 6.94961 7.42632 7.47064 8.90233 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.017777 B = 0.005262 C = 0.004659 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1574.676647 B = 5319.389246 C = 6008.456912 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.034 3.966 3 Si 0.950 3.050 4 H -0.264 1.264 5 H -0.287 1.287 6 H -0.283 1.283 7 C -0.502 4.502 8 H 0.061 0.939 9 C 0.006 3.994 10 C 0.176 3.824 11 N -0.675 5.675 12 C 0.537 3.463 13 O -0.595 6.595 14 C -0.143 4.143 15 C -0.099 4.099 16 C -0.125 4.125 17 C -0.082 4.082 18 C -0.114 4.114 19 C -0.066 4.066 20 C -0.084 4.084 21 C -0.113 4.113 22 C -0.073 4.073 23 C -0.197 4.197 24 C -0.187 4.187 25 H 0.257 0.743 26 H 0.016 0.984 27 H 0.080 0.920 28 H 0.402 0.598 29 H 0.129 0.871 30 H 0.160 0.840 31 H 0.161 0.839 32 H 0.061 0.939 33 H 0.065 0.935 34 H 0.078 0.922 35 H 0.096 0.904 36 H 0.093 0.907 37 H 0.101 0.899 38 H 0.074 0.926 39 H 0.080 0.920 40 H 0.086 0.914 41 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.052 -0.159 16.081 16.117 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.167 4.167 3 Si 0.776 3.224 4 H -0.188 1.188 5 H -0.213 1.213 6 H -0.209 1.209 7 C -0.539 4.539 8 H 0.079 0.921 9 C 0.005 3.995 10 C 0.052 3.948 11 N -0.321 5.321 12 C 0.326 3.674 13 O -0.479 6.479 14 C -0.146 4.146 15 C -0.118 4.118 16 C -0.142 4.142 17 C -0.100 4.100 18 C -0.114 4.114 19 C -0.067 4.067 20 C -0.121 4.121 21 C -0.151 4.151 22 C -0.109 4.109 23 C -0.235 4.235 24 C -0.224 4.224 25 H 0.066 0.934 26 H 0.034 0.966 27 H 0.097 0.903 28 H 0.238 0.762 29 H 0.147 0.853 30 H 0.178 0.822 31 H 0.178 0.822 32 H 0.080 0.920 33 H 0.084 0.916 34 H 0.096 0.904 35 H 0.114 0.886 36 H 0.111 0.889 37 H 0.120 0.880 38 H 0.093 0.907 39 H 0.099 0.901 40 H 0.105 0.895 41 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -1.935 -0.349 15.872 15.993 hybrid contribution 0.786 0.840 -1.017 1.536 sum -1.149 0.492 14.855 14.907 Atomic orbital electron populations 1.70052 1.06934 1.26753 1.49297 1.25614 0.95349 1.01760 0.93980 0.85631 0.79350 0.80117 0.77325 1.18754 1.21326 1.20915 1.20733 0.92466 0.89319 1.51377 0.92105 1.19301 0.93580 0.90599 0.96014 1.20785 0.97851 0.95336 0.80833 1.45559 1.12547 1.63758 1.10273 1.18795 0.83882 0.79012 0.85756 1.90614 1.27060 1.49348 1.80884 1.19763 0.95636 1.05655 0.93570 1.21457 0.95201 0.97181 0.97968 1.21344 1.00821 0.99661 0.92412 1.21145 0.90595 0.97318 1.00929 1.21047 0.96807 0.99092 0.94501 1.20934 0.95175 0.96597 0.94000 1.21091 0.90633 1.01390 0.99003 1.22357 1.00067 1.00422 0.92214 1.21096 0.89797 1.00878 0.99161 1.22956 1.01834 1.06099 0.92642 1.22942 0.98337 0.99153 1.02012 0.93357 0.96580 0.90258 0.76189 0.85342 0.82195 0.82160 0.91998 0.91628 0.90354 0.88588 0.88921 0.88046 0.90743 0.90140 0.89510 0.90153 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -48.89 10.22 21.45 0.22 -48.67 16 2 C 0.03 1.76 5.28 84.65 0.45 2.21 16 3 Si 0.95 41.13 29.54 68.60 2.03 43.15 16 4 H -0.26 -10.94 7.11 99.48 0.71 -10.23 16 5 H -0.29 -12.57 7.11 99.48 0.71 -11.87 16 6 H -0.28 -12.21 7.11 99.48 0.71 -11.50 16 7 C -0.50 -25.33 8.31 25.60 0.21 -25.12 16 8 H 0.06 3.03 7.81 -2.91 -0.02 3.01 16 9 C 0.01 0.27 2.06 -52.93 -0.11 0.16 16 10 C 0.18 8.81 4.63 86.38 0.40 9.21 16 11 N -0.67 -31.25 5.12 -465.97 -2.39 -33.64 16 12 C 0.54 24.90 7.76 86.79 0.67 25.57 16 13 O -0.60 -30.84 14.65 -3.87 -0.06 -30.90 16 14 C -0.14 -5.50 5.88 -20.06 -0.12 -5.61 16 15 C -0.10 -3.18 9.53 22.50 0.21 -2.96 16 16 C -0.12 -3.00 10.03 22.20 0.22 -2.78 16 17 C -0.08 -1.77 10.02 22.32 0.22 -1.55 16 18 C -0.11 -2.91 6.14 -19.61 -0.12 -3.03 16 19 C -0.07 -2.23 6.04 -19.29 -0.12 -2.35 16 20 C -0.08 -2.66 5.65 30.51 0.17 -2.49 16 21 C -0.11 -2.34 7.08 31.51 0.22 -2.11 16 22 C -0.07 -1.32 6.76 30.52 0.21 -1.11 16 23 C -0.20 -8.57 9.96 30.62 0.30 -8.27 16 24 C -0.19 -7.67 9.92 30.62 0.30 -7.36 16 25 H 0.26 13.80 8.32 -92.71 -0.77 13.03 16 26 H 0.02 0.81 8.05 -2.39 -0.02 0.79 16 27 H 0.08 4.56 5.90 -2.39 -0.01 4.55 16 28 H 0.40 17.59 5.99 -92.71 -0.56 17.03 16 29 H 0.13 4.02 6.41 -2.91 -0.02 4.00 16 30 H 0.16 2.74 8.06 -2.91 -0.02 2.71 16 31 H 0.16 2.17 8.06 -2.91 -0.02 2.15 16 32 H 0.06 2.26 7.08 -2.39 -0.02 2.25 16 33 H 0.07 2.20 8.14 -2.38 -0.02 2.18 16 34 H 0.08 1.49 8.14 -2.39 -0.02 1.47 16 35 H 0.10 1.57 8.14 -2.39 -0.02 1.55 16 36 H 0.09 1.46 8.14 -2.39 -0.02 1.44 16 37 H 0.10 1.31 8.14 -2.39 -0.02 1.29 16 38 H 0.07 3.10 8.14 -2.39 -0.02 3.08 16 39 H 0.08 3.46 8.14 -2.39 -0.02 3.44 16 40 H 0.09 3.36 8.14 -2.39 -0.02 3.34 16 41 H 0.08 3.09 8.14 -2.39 -0.02 3.07 16 Total: -1.00 -64.28 334.89 3.42 -60.86 By element: Atomic # 1 Polarization: 36.31 SS G_CDS: 0.48 Total: 36.79 kcal Atomic # 6 Polarization: -30.75 SS G_CDS: 3.14 Total: -27.60 kcal Atomic # 7 Polarization: -80.13 SS G_CDS: -2.17 Total: -82.30 kcal Atomic # 8 Polarization: -30.84 SS G_CDS: -0.06 Total: -30.90 kcal Atomic # 14 Polarization: 41.13 SS G_CDS: 2.03 Total: 43.15 kcal Total: -64.28 3.42 -60.86 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000519061480.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.631 kcal (2) G-P(sol) polarization free energy of solvation -64.282 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.651 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.424 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.858 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.227 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds