Wall clock time and date at job start Tue Mar 31 2020 05:34:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86799 * 119.99655 * 2 1 4 4 H 1.48506 * 109.47285 * 269.99887 * 3 2 1 5 5 H 1.48504 * 109.47593 * 29.99511 * 3 2 1 6 6 H 1.48497 * 109.47488 * 149.99899 * 3 2 1 7 7 C 1.37868 * 120.00076 * 179.97438 * 2 1 3 8 8 H 1.08010 * 119.99654 * 180.02562 * 7 2 1 9 9 C 1.50693 * 120.00229 * 359.97438 * 7 2 1 10 10 C 1.53126 * 109.52400 * 180.02562 * 9 7 2 11 11 C 1.53041 * 109.27728 * 182.37897 * 10 9 7 12 12 N 1.46847 * 109.52377 * 59.18045 * 11 10 9 13 13 C 1.46896 * 110.99740 * 174.15977 * 12 11 10 14 14 C 1.50706 * 109.47018 * 169.99459 * 13 12 11 15 15 N 1.30495 * 125.64986 * 270.17673 * 14 13 12 16 16 C 1.34130 * 109.25279 * 180.29309 * 15 14 13 17 17 C 1.34672 * 108.02271 * 359.72306 * 16 15 14 18 18 N 1.35042 * 125.64658 * 89.99951 * 14 13 12 19 19 C 1.46506 * 126.39778 * 359.97438 * 18 14 13 20 20 F 1.39900 * 109.46822 * 209.71535 * 19 18 14 21 21 F 1.39897 * 109.46905 * 329.70980 * 19 18 14 22 22 C 1.46843 * 111.19485 * 298.25394 * 12 11 10 23 23 C 1.53036 * 109.52583 * 61.74366 * 22 12 11 24 24 H 0.97003 * 120.00440 * 0.02562 * 1 2 3 25 25 H 1.08998 * 109.52241 * 300.12602 * 9 7 2 26 26 H 1.09000 * 109.50345 * 62.43528 * 10 9 7 27 27 H 1.09004 * 109.53261 * 302.33699 * 10 9 7 28 28 H 1.08991 * 109.46117 * 299.15924 * 11 10 9 29 29 H 1.09005 * 109.44772 * 179.18885 * 11 10 9 30 30 H 1.09002 * 109.47142 * 49.99725 * 13 12 11 31 31 H 1.08995 * 109.47193 * 289.99646 * 13 12 11 32 32 H 1.08000 * 125.99388 * 179.72943 * 16 15 14 33 33 H 1.07996 * 126.59776 * 180.02562 * 17 16 15 34 34 H 1.09000 * 109.47212 * 89.71157 * 19 18 14 35 35 H 1.09004 * 109.46478 * 181.76249 * 22 12 11 36 36 H 1.09005 * 109.46574 * 301.72924 * 22 12 11 37 37 H 1.08999 * 109.50688 * 180.87521 * 23 22 12 38 38 H 1.09009 * 109.53161 * 60.77862 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4464 2.6528 0.6999 6 1 3.5466 1.4404 0.7000 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0010 9 6 1.2511 -2.4990 0.0017 10 6 2.2451 -3.6638 0.0027 11 6 1.4753 -4.9851 -0.0560 12 7 0.6535 -5.0206 -1.2725 13 6 0.0072 -6.3300 -1.4332 14 6 -1.0108 -6.2550 -2.5419 15 7 -2.2675 -5.9331 -2.4001 16 6 -2.8729 -5.9768 -3.5962 17 6 -1.9551 -6.3336 -4.5149 18 7 -0.7729 -6.5066 -3.8471 19 6 0.5097 -6.8978 -4.4373 20 9 0.5781 -6.4323 -5.7548 21 9 1.5549 -6.3422 -3.6917 22 6 -0.3403 -3.9396 -1.2736 23 6 0.3753 -2.5870 -1.2511 24 1 -0.4851 0.8400 -0.0004 25 1 0.6228 -2.5561 0.8905 26 1 2.8430 -3.6311 0.9135 27 1 2.8997 -3.5851 -0.8653 28 1 0.8318 -5.0698 0.8196 29 1 2.1808 -5.8160 -0.0700 30 1 -0.4886 -6.6070 -0.5028 31 1 0.7597 -7.0786 -1.6808 32 1 -3.9139 -5.7632 -3.7888 33 1 -2.1201 -6.4588 -5.5749 34 1 0.5964 -7.9844 -4.4308 35 1 -0.9538 -4.0110 -2.1718 36 1 -0.9754 -4.0291 -0.3922 37 1 -0.3628 -1.7850 -1.2362 38 1 0.9998 -2.4903 -2.1393 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000541947854.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:34:30 Heat of formation + Delta-G solvation = -22.525364 kcal Electronic energy + Delta-G solvation = -23467.431652 eV Core-core repulsion = 19789.129670 eV Total energy + Delta-G solvation = -3678.301982 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 285.135 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -49.43334 -47.53655 -42.16119 -38.10835 -34.09565 -33.56217 -31.75505 -29.79148 -29.54701 -26.86139 -26.00868 -24.35263 -22.11109 -21.59836 -21.46204 -20.28797 -18.52981 -18.32594 -18.09388 -17.28386 -16.35478 -15.67062 -14.99653 -14.61131 -14.55862 -14.31809 -14.24315 -14.15433 -13.98151 -13.60953 -13.31032 -12.84808 -12.76003 -12.42253 -12.24774 -11.94058 -11.70453 -11.35353 -10.89776 -10.69796 -10.42729 -10.14768 -10.08483 -10.03853 -9.91785 -9.36396 -8.91342 -8.66436 -8.51750 -8.22704 -7.72557 -5.90246 -3.95811 1.68901 2.07160 3.03953 3.31637 3.35680 3.42156 3.45245 3.93931 4.19350 4.31209 4.47835 4.50599 4.64431 5.19673 5.35618 5.39838 5.52635 5.66276 5.76568 5.93494 6.04435 6.16428 6.33950 6.41425 6.56003 6.68029 6.71056 6.82387 6.93026 7.12635 7.19949 7.48632 7.64337 7.70264 7.88057 7.97979 8.12160 8.23807 8.55215 9.07922 9.68239 11.15831 Molecular weight = 285.13amu Principal moments of inertia in cm(-1) A = 0.022070 B = 0.004617 C = 0.004528 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1268.367943 B = 6063.136580 C = 6182.200027 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.060 3.940 3 Si 0.889 3.111 4 H -0.282 1.282 5 H -0.288 1.288 6 H -0.275 1.275 7 C -0.510 4.510 8 H 0.054 0.946 9 C 0.048 3.952 10 C -0.105 4.105 11 C 0.062 3.938 12 N -0.526 5.526 13 C 0.131 3.869 14 C 0.247 3.753 15 N -0.475 5.475 16 C -0.014 4.014 17 C -0.052 4.052 18 N -0.510 5.510 19 C 0.482 3.518 20 F -0.184 7.184 21 F -0.158 7.158 22 C 0.061 3.939 23 C -0.101 4.101 24 H 0.259 0.741 25 H 0.021 0.979 26 H 0.051 0.949 27 H 0.056 0.944 28 H 0.028 0.972 29 H 0.059 0.941 30 H 0.063 0.937 31 H 0.085 0.915 32 H 0.175 0.825 33 H 0.180 0.820 34 H 0.148 0.852 35 H 0.056 0.944 36 H 0.027 0.973 37 H 0.091 0.909 38 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.702 -17.577 -8.983 19.813 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.140 4.140 3 Si 0.717 3.283 4 H -0.208 1.208 5 H -0.213 1.213 6 H -0.200 1.200 7 C -0.548 4.548 8 H 0.072 0.928 9 C 0.029 3.971 10 C -0.143 4.143 11 C -0.065 4.065 12 N -0.252 5.252 13 C 0.001 3.999 14 C -0.015 4.015 15 N -0.193 5.193 16 C -0.160 4.160 17 C -0.182 4.182 18 N -0.206 5.206 19 C 0.347 3.653 20 F -0.165 7.165 21 F -0.139 7.139 22 C -0.067 4.067 23 C -0.140 4.140 24 H 0.069 0.931 25 H 0.039 0.961 26 H 0.070 0.930 27 H 0.075 0.925 28 H 0.046 0.954 29 H 0.077 0.923 30 H 0.081 0.919 31 H 0.103 0.897 32 H 0.192 0.808 33 H 0.197 0.803 34 H 0.164 0.836 35 H 0.075 0.925 36 H 0.046 0.954 37 H 0.109 0.891 38 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -1.764 -17.181 -8.724 19.350 hybrid contribution 0.253 0.788 -0.399 0.919 sum -1.511 -16.393 -9.123 18.821 Atomic orbital electron populations 1.69888 1.05849 1.26237 1.51044 1.24972 0.94816 0.98971 0.95287 0.86649 0.79874 0.83766 0.78002 1.20810 1.21347 1.19998 1.21200 0.92827 0.90693 1.50088 0.92795 1.18689 0.92675 0.91721 0.94008 1.21666 0.98673 0.93591 1.00325 1.22131 0.95658 0.99557 0.89171 1.62250 1.23333 1.00782 1.38875 1.20572 0.91908 0.94764 0.92623 1.23285 0.93766 1.01000 0.83405 1.70410 1.04107 1.18579 1.26222 1.22401 1.00212 1.05118 0.88301 1.22629 0.84628 1.11167 0.99746 1.46751 1.09016 1.55237 1.09571 1.21473 0.75329 0.95864 0.72643 1.93103 1.95691 1.91327 1.36407 1.93253 1.56628 1.87980 1.76040 1.22309 0.92650 0.92315 0.99382 1.21644 1.00046 0.93138 0.99149 0.93135 0.96084 0.93033 0.92484 0.95388 0.92285 0.91949 0.89731 0.80765 0.80323 0.83555 0.92511 0.95440 0.89068 0.94246 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.20 11.37 55.43 0.63 -25.57 16 2 C 0.06 1.71 5.31 -17.82 -0.09 1.62 16 3 Si 0.89 21.81 29.54 -169.99 -5.02 16.79 16 4 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 5 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 6 H -0.27 -6.64 7.11 56.52 0.40 -6.23 16 7 C -0.51 -14.35 8.56 -34.45 -0.29 -14.64 16 8 H 0.05 1.50 7.75 -52.48 -0.41 1.09 16 9 C 0.05 1.22 2.16 -91.65 -0.20 1.02 16 10 C -0.10 -2.23 5.32 -26.64 -0.14 -2.37 16 11 C 0.06 1.12 5.42 -3.83 -0.02 1.10 16 12 N -0.53 -9.61 4.50 -236.11 -1.06 -10.67 16 13 C 0.13 1.93 4.78 -4.98 -0.02 1.91 16 14 C 0.25 3.74 5.60 -155.42 -0.87 2.87 16 15 N -0.47 -7.80 10.29 -10.81 -0.11 -7.91 16 16 C -0.01 -0.18 11.87 -17.81 -0.21 -0.39 16 17 C -0.05 -0.60 11.16 -16.56 -0.18 -0.79 16 18 N -0.51 -6.43 3.14 -119.64 -0.38 -6.81 16 19 C 0.48 4.78 6.35 59.85 0.38 5.16 16 20 F -0.18 -1.99 17.04 2.25 0.04 -1.95 16 21 F -0.16 -2.05 14.89 2.25 0.03 -2.01 16 22 C 0.06 1.30 4.94 -3.84 -0.02 1.28 16 23 C -0.10 -2.54 5.12 -26.65 -0.14 -2.68 16 24 H 0.26 7.27 8.31 -40.82 -0.34 6.94 16 25 H 0.02 0.59 8.14 -51.93 -0.42 0.17 16 26 H 0.05 1.05 8.14 -51.93 -0.42 0.62 16 27 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 28 H 0.03 0.51 8.14 -51.93 -0.42 0.08 16 29 H 0.06 0.89 8.12 -51.93 -0.42 0.47 16 30 H 0.06 0.91 8.08 -51.93 -0.42 0.49 16 31 H 0.08 1.02 7.04 -51.93 -0.37 0.65 16 32 H 0.18 1.81 8.06 -52.49 -0.42 1.39 16 33 H 0.18 1.45 8.06 -52.49 -0.42 1.03 16 34 H 0.15 0.72 8.14 -51.93 -0.42 0.30 16 35 H 0.06 1.24 5.96 -51.93 -0.31 0.93 16 36 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 37 H 0.09 2.55 6.18 -51.93 -0.32 2.23 16 38 H 0.04 1.02 8.14 -51.92 -0.42 0.60 16 LS Contribution 313.23 15.07 4.72 4.72 Total: -1.00 -32.48 313.23 -8.15 -40.63 By element: Atomic # 1 Polarization: 3.87 SS G_CDS: -5.18 Total: -1.31 kcal Atomic # 6 Polarization: -4.11 SS G_CDS: -1.82 Total: -5.92 kcal Atomic # 7 Polarization: -50.03 SS G_CDS: -0.92 Total: -50.95 kcal Atomic # 9 Polarization: -4.03 SS G_CDS: 0.07 Total: -3.96 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -5.02 Total: 16.79 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -32.48 -8.15 -40.63 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000541947854.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.107 kcal (2) G-P(sol) polarization free energy of solvation -32.485 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.378 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.147 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.632 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.525 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds