Wall clock time and date at job start Tue Mar 31 2020 05:34:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86799 * 119.99655 * 2 1 4 4 H 1.48506 * 109.47285 * 269.99887 * 3 2 1 5 5 H 1.48504 * 109.47593 * 29.99511 * 3 2 1 6 6 H 1.48497 * 109.47488 * 149.99899 * 3 2 1 7 7 C 1.37868 * 120.00076 * 179.97438 * 2 1 3 8 8 H 1.08010 * 119.99654 * 180.02562 * 7 2 1 9 9 C 1.50693 * 120.00229 * 359.97438 * 7 2 1 10 10 C 1.53126 * 109.52400 * 180.02562 * 9 7 2 11 11 C 1.53041 * 109.27728 * 182.37897 * 10 9 7 12 12 N 1.46847 * 109.52377 * 59.18045 * 11 10 9 13 13 C 1.46896 * 110.99740 * 174.15977 * 12 11 10 14 14 C 1.50706 * 109.47018 * 169.99459 * 13 12 11 15 15 N 1.30495 * 125.64986 * 270.17673 * 14 13 12 16 16 C 1.34130 * 109.25279 * 180.29309 * 15 14 13 17 17 C 1.34672 * 108.02271 * 359.72306 * 16 15 14 18 18 N 1.35042 * 125.64658 * 89.99951 * 14 13 12 19 19 C 1.46506 * 126.39778 * 359.97438 * 18 14 13 20 20 F 1.39900 * 109.46822 * 209.71535 * 19 18 14 21 21 F 1.39897 * 109.46905 * 329.70980 * 19 18 14 22 22 C 1.46843 * 111.19485 * 298.25394 * 12 11 10 23 23 C 1.53036 * 109.52583 * 61.74366 * 22 12 11 24 24 H 0.97003 * 120.00440 * 0.02562 * 1 2 3 25 25 H 1.08998 * 109.52241 * 300.12602 * 9 7 2 26 26 H 1.09000 * 109.50345 * 62.43528 * 10 9 7 27 27 H 1.09004 * 109.53261 * 302.33699 * 10 9 7 28 28 H 1.08991 * 109.46117 * 299.15924 * 11 10 9 29 29 H 1.09005 * 109.44772 * 179.18885 * 11 10 9 30 30 H 1.09002 * 109.47142 * 49.99725 * 13 12 11 31 31 H 1.08995 * 109.47193 * 289.99646 * 13 12 11 32 32 H 1.08000 * 125.99388 * 179.72943 * 16 15 14 33 33 H 1.07996 * 126.59776 * 180.02562 * 17 16 15 34 34 H 1.09000 * 109.47212 * 89.71157 * 19 18 14 35 35 H 1.09004 * 109.46478 * 181.76249 * 22 12 11 36 36 H 1.09005 * 109.46574 * 301.72924 * 22 12 11 37 37 H 1.08999 * 109.50688 * 180.87521 * 23 22 12 38 38 H 1.09009 * 109.53161 * 60.77862 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4464 2.6528 0.6999 6 1 3.5466 1.4404 0.7000 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0010 9 6 1.2511 -2.4990 0.0017 10 6 2.2451 -3.6638 0.0027 11 6 1.4753 -4.9851 -0.0560 12 7 0.6535 -5.0206 -1.2725 13 6 0.0072 -6.3300 -1.4332 14 6 -1.0108 -6.2550 -2.5419 15 7 -2.2675 -5.9331 -2.4001 16 6 -2.8729 -5.9768 -3.5962 17 6 -1.9551 -6.3336 -4.5149 18 7 -0.7729 -6.5066 -3.8471 19 6 0.5097 -6.8978 -4.4373 20 9 0.5781 -6.4323 -5.7548 21 9 1.5549 -6.3422 -3.6917 22 6 -0.3403 -3.9396 -1.2736 23 6 0.3753 -2.5870 -1.2511 24 1 -0.4851 0.8400 -0.0004 25 1 0.6228 -2.5561 0.8905 26 1 2.8430 -3.6311 0.9135 27 1 2.8997 -3.5851 -0.8653 28 1 0.8318 -5.0698 0.8196 29 1 2.1808 -5.8160 -0.0700 30 1 -0.4886 -6.6070 -0.5028 31 1 0.7597 -7.0786 -1.6808 32 1 -3.9139 -5.7632 -3.7888 33 1 -2.1201 -6.4588 -5.5749 34 1 0.5964 -7.9844 -4.4308 35 1 -0.9538 -4.0110 -2.1718 36 1 -0.9754 -4.0291 -0.3922 37 1 -0.3628 -1.7850 -1.2362 38 1 0.9998 -2.4903 -2.1393 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000541947854.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:34:29 Heat of formation + Delta-G solvation = -43.741708 kcal Electronic energy + Delta-G solvation = -23468.351662 eV Core-core repulsion = 19789.129670 eV Total energy + Delta-G solvation = -3679.221992 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 285.135 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -50.24053 -48.36541 -43.15299 -39.73330 -35.92036 -34.52490 -33.58892 -31.51314 -30.92084 -28.30311 -27.06471 -25.97171 -23.81127 -23.22688 -22.51763 -21.31711 -20.34649 -19.16288 -19.00785 -18.44510 -18.12426 -17.14278 -16.45354 -16.07996 -15.74962 -15.57130 -15.43529 -15.10806 -15.00876 -14.78259 -14.62209 -14.43261 -14.23863 -14.14224 -13.50747 -13.20137 -13.11101 -12.99490 -12.83565 -12.57651 -12.28399 -12.01841 -11.88433 -11.37663 -11.15182 -11.05434 -10.81231 -10.65580 -10.38704 -9.58798 -9.17429 -8.07840 -6.22016 0.72317 1.23953 1.40149 1.40584 1.51230 1.99802 2.43329 2.66010 3.07562 3.12484 3.18988 3.30868 3.58320 3.68030 4.19489 4.21167 4.31293 4.38050 4.46124 4.51897 4.62918 4.70998 4.77737 4.87480 4.98092 5.09052 5.10301 5.22582 5.31511 5.55302 5.61086 5.67324 5.79526 5.96785 5.98688 6.18607 6.28028 6.39541 6.90572 6.97335 7.46029 8.96846 Molecular weight = 285.13amu Principal moments of inertia in cm(-1) A = 0.022070 B = 0.004617 C = 0.004528 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1268.367943 B = 6063.136580 C = 6182.200027 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C 0.009 3.991 3 Si 0.955 3.045 4 H -0.278 1.278 5 H -0.284 1.284 6 H -0.265 1.265 7 C -0.531 4.531 8 H 0.054 0.946 9 C 0.044 3.956 10 C -0.098 4.098 11 C 0.067 3.933 12 N -0.529 5.529 13 C 0.134 3.866 14 C 0.223 3.777 15 N -0.515 5.515 16 C -0.042 4.042 17 C -0.033 4.033 18 N -0.512 5.512 19 C 0.476 3.524 20 F -0.190 7.190 21 F -0.178 7.178 22 C 0.084 3.916 23 C -0.090 4.090 24 H 0.259 0.741 25 H -0.013 1.013 26 H 0.060 0.940 27 H 0.052 0.948 28 H 0.025 0.975 29 H 0.101 0.899 30 H 0.063 0.937 31 H 0.120 0.880 32 H 0.192 0.808 33 H 0.215 0.785 34 H 0.207 0.793 35 H 0.052 0.948 36 H 0.008 0.992 37 H 0.054 0.946 38 H 0.023 0.977 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.521 -19.362 -10.130 21.858 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.189 4.189 3 Si 0.781 3.219 4 H -0.203 1.203 5 H -0.209 1.209 6 H -0.189 1.189 7 C -0.569 4.569 8 H 0.072 0.928 9 C 0.025 3.975 10 C -0.135 4.135 11 C -0.060 4.060 12 N -0.255 5.255 13 C 0.005 3.995 14 C -0.039 4.039 15 N -0.234 5.234 16 C -0.188 4.188 17 C -0.163 4.163 18 N -0.206 5.206 19 C 0.342 3.658 20 F -0.171 7.171 21 F -0.159 7.159 22 C -0.044 4.044 23 C -0.128 4.128 24 H 0.068 0.932 25 H 0.006 0.994 26 H 0.078 0.922 27 H 0.070 0.930 28 H 0.044 0.956 29 H 0.120 0.880 30 H 0.081 0.919 31 H 0.138 0.862 32 H 0.209 0.791 33 H 0.232 0.768 34 H 0.223 0.777 35 H 0.070 0.930 36 H 0.027 0.973 37 H 0.072 0.928 38 H 0.042 0.958 Dipole moment (debyes) X Y Z Total from point charges -0.557 -18.988 -9.876 21.410 hybrid contribution -0.161 1.330 -0.102 1.344 sum -0.718 -17.658 -9.977 20.295 Atomic orbital electron populations 1.70049 1.07337 1.26995 1.51674 1.25801 0.95649 1.02583 0.94914 0.85605 0.78843 0.79367 0.78135 1.20347 1.20949 1.18941 1.21601 0.93068 0.92163 1.50099 0.92785 1.18664 0.93174 0.93082 0.92552 1.21525 0.97813 0.93701 1.00504 1.22103 0.96007 0.98898 0.88991 1.62153 1.22636 1.01706 1.38981 1.20657 0.92798 0.93038 0.92984 1.23184 0.93554 1.02598 0.84547 1.70324 1.05394 1.19400 1.28317 1.22850 1.01632 1.06354 0.87955 1.23196 0.83756 1.08437 1.00895 1.46968 1.10261 1.54447 1.08951 1.22408 0.73524 0.98178 0.71670 1.93091 1.95573 1.91688 1.36796 1.93207 1.57506 1.88595 1.76605 1.21860 0.92503 0.91806 0.98212 1.21380 0.98890 0.94406 0.98156 0.93199 0.99447 0.92178 0.92956 0.95625 0.88038 0.91875 0.86200 0.79083 0.76824 0.77656 0.93002 0.97346 0.92796 0.95827 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -56.02 11.37 21.44 0.24 -55.78 16 2 C 0.01 0.50 5.31 84.65 0.45 0.94 16 3 Si 0.95 45.30 29.54 68.60 2.03 47.33 16 4 H -0.28 -12.91 7.11 99.48 0.71 -12.20 16 5 H -0.28 -13.20 7.11 99.48 0.71 -12.50 16 6 H -0.27 -12.05 7.11 99.48 0.71 -11.35 16 7 C -0.53 -30.57 8.56 25.60 0.22 -30.35 16 8 H 0.05 3.03 7.75 -2.91 -0.02 3.00 16 9 C 0.04 2.32 2.16 -11.46 -0.02 2.29 16 10 C -0.10 -4.11 5.32 30.65 0.16 -3.95 16 11 C 0.07 2.29 5.42 86.33 0.47 2.76 16 12 N -0.53 -18.74 4.50 -900.93 -4.06 -22.79 16 13 C 0.13 3.68 4.78 85.56 0.41 4.09 16 14 C 0.22 6.42 5.60 138.13 0.77 7.19 16 15 N -0.51 -16.74 10.29 -188.13 -1.94 -18.67 16 16 C -0.04 -1.08 11.87 83.52 0.99 -0.08 16 17 C -0.03 -0.67 11.16 83.09 0.93 0.25 16 18 N -0.51 -11.57 3.14 -532.44 -1.67 -13.24 16 19 C 0.48 7.76 6.35 127.77 0.81 8.57 16 20 F -0.19 -3.53 17.04 44.97 0.77 -2.76 16 21 F -0.18 -4.10 14.89 44.97 0.67 -3.43 16 22 C 0.08 3.70 4.94 86.33 0.43 4.13 16 23 C -0.09 -4.69 5.12 30.64 0.16 -4.53 16 24 H 0.26 15.00 8.31 -92.71 -0.77 14.23 16 25 H -0.01 -0.74 8.14 -2.39 -0.02 -0.76 16 26 H 0.06 2.39 8.14 -2.39 -0.02 2.37 16 27 H 0.05 2.24 8.14 -2.38 -0.02 2.22 16 28 H 0.03 0.90 8.14 -2.39 -0.02 0.88 16 29 H 0.10 2.68 8.12 -2.38 -0.02 2.66 16 30 H 0.06 1.74 8.08 -2.39 -0.02 1.72 16 31 H 0.12 2.44 7.04 -2.39 -0.02 2.42 16 32 H 0.19 3.83 8.06 -2.91 -0.02 3.81 16 33 H 0.22 2.67 8.06 -2.91 -0.02 2.65 16 34 H 0.21 0.96 8.14 -2.39 -0.02 0.94 16 35 H 0.05 2.32 5.96 -2.38 -0.01 2.31 16 36 H 0.01 0.39 8.14 -2.38 -0.02 0.37 16 37 H 0.05 3.19 6.18 -2.39 -0.01 3.18 16 38 H 0.02 1.25 8.14 -2.38 -0.02 1.23 16 Total: -1.00 -73.73 313.23 2.87 -70.86 By element: Atomic # 1 Polarization: 6.11 SS G_CDS: 1.06 Total: 7.17 kcal Atomic # 6 Polarization: -14.45 SS G_CDS: 5.77 Total: -8.68 kcal Atomic # 7 Polarization: -103.06 SS G_CDS: -7.42 Total: -110.49 kcal Atomic # 9 Polarization: -7.63 SS G_CDS: 1.44 Total: -6.19 kcal Atomic # 14 Polarization: 45.30 SS G_CDS: 2.03 Total: 47.33 kcal Total: -73.73 2.87 -70.86 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000541947854.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.115 kcal (2) G-P(sol) polarization free energy of solvation -73.728 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.613 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.871 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.857 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.742 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds