Wall clock time and date at job start Tue Mar 31 2020 05:31:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13598 * 1 3 3 C 1.43205 * 179.97438 * 2 1 4 4 C 1.40561 * 126.52027 * 292.74924 * 3 2 1 5 5 N 1.30779 * 108.74892 * 180.02562 * 4 3 2 6 6 N 1.39908 * 109.49240 * 359.97438 * 5 4 3 7 7 C 1.36374 * 132.19647 * 180.30425 * 6 5 4 8 8 C 1.35720 * 119.14217 * 180.19109 * 7 6 5 9 9 C 1.50700 * 120.31280 * 179.77487 * 8 7 6 10 10 N 1.46906 * 109.47183 * 269.72520 * 9 8 7 11 11 C 1.46901 * 110.99793 * 180.02562 * 10 9 8 12 12 C 1.53000 * 109.46769 * 180.02562 * 11 10 9 13 13 C 1.53001 * 109.46886 * 180.02562 * 12 11 10 14 14 C 1.50697 * 109.47291 * 179.97438 * 13 12 11 15 15 H 1.08006 * 119.99920 * 359.97438 * 14 13 12 16 16 C 1.37876 * 120.00428 * 179.97438 * 14 13 12 17 17 N 1.31519 * 119.99563 * 359.97438 * 16 14 13 18 18 Si 1.86800 * 120.00432 * 180.02562 * 16 14 13 19 19 H 1.48505 * 109.46678 * 359.97438 * 18 16 14 20 20 H 1.48495 * 109.47258 * 119.99423 * 18 16 14 21 21 H 1.48493 * 109.47346 * 240.00028 * 18 16 14 22 22 C 1.40007 * 119.36886 * 359.50406 * 8 7 6 23 23 N 1.31463 * 120.13825 * 0.22741 * 22 8 7 24 24 C 1.33410 * 120.85650 * 0.02562 * 23 22 8 25 25 H 1.07997 * 125.62515 * 359.97438 * 4 3 2 26 26 H 1.07997 * 120.43204 * 359.96598 * 7 6 5 27 27 H 1.08995 * 109.46796 * 149.72725 * 9 8 7 28 28 H 1.09002 * 109.47497 * 29.72519 * 9 8 7 29 29 H 1.00899 * 110.99995 * 56.04682 * 10 9 8 30 30 H 1.09002 * 109.47401 * 59.99808 * 11 10 9 31 31 H 1.09001 * 109.46874 * 299.99821 * 11 10 9 32 32 H 1.09001 * 109.47194 * 299.99524 * 12 11 10 33 33 H 1.08992 * 109.47399 * 59.99697 * 12 11 10 34 34 H 1.09001 * 109.47109 * 299.99380 * 13 12 11 35 35 H 1.09002 * 109.47508 * 59.99571 * 13 12 11 36 36 H 0.97000 * 119.99425 * 180.02562 * 17 16 14 37 37 H 1.08009 * 119.93185 * 180.24989 * 22 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.4047 -0.4358 1.0417 5 7 4.6500 -0.2804 0.6738 6 7 4.6918 0.2602 -0.6159 7 6 5.7290 0.5984 -1.4342 8 6 5.4621 1.1177 -2.6594 9 6 6.5881 1.5053 -3.5830 10 7 6.9533 2.9087 -3.3479 11 6 8.0501 3.3226 -4.2332 12 6 8.4020 4.7861 -3.9591 13 6 9.5438 5.2174 -4.8816 14 6 9.8901 6.6591 -4.6121 15 1 9.3494 7.2126 -3.8585 16 6 10.8970 7.2717 -5.3275 17 7 11.5557 6.5976 -6.2448 18 14 11.3267 9.0586 -4.9930 19 1 10.4453 9.5872 -3.9210 20 1 12.7442 9.1543 -4.5610 21 1 11.1316 9.8548 -6.2311 22 6 4.1308 1.2846 -3.0592 23 7 3.1513 0.9445 -2.2510 24 6 3.4053 0.4381 -1.0432 25 1 3.0738 -0.8331 1.9899 26 1 6.7496 0.4582 -1.1101 27 1 6.2682 1.3815 -4.6176 28 1 7.4514 0.8681 -3.3909 29 1 7.1918 3.0629 -2.3797 30 1 7.7400 3.2115 -5.2722 31 1 8.9235 2.6980 -4.0459 32 1 7.5286 5.4110 -4.1460 33 1 8.7122 4.8968 -2.9201 34 1 10.4174 4.5927 -4.6950 35 1 9.2332 5.1068 -5.9205 36 1 12.2644 7.0285 -6.7478 37 1 3.9080 1.6932 -4.0339 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000551993132.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:31:00 Heat of formation + Delta-G solvation = 113.370826 kcal Electronic energy + Delta-G solvation = -20067.106815 eV Core-core repulsion = 16845.386920 eV Total energy + Delta-G solvation = -3221.719895 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 285.128 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -43.60784 -39.71654 -37.70806 -37.47691 -35.75536 -35.02472 -33.64900 -31.95620 -30.86098 -28.40106 -26.51006 -25.84816 -24.38300 -23.71509 -22.85288 -21.81869 -20.28143 -18.87650 -18.47223 -18.17624 -17.38591 -16.92705 -16.53944 -16.30101 -15.63640 -15.46127 -15.05428 -14.78005 -14.55549 -14.48952 -14.32127 -14.22656 -13.74582 -13.61846 -13.45963 -13.16404 -13.00442 -12.65801 -12.47940 -12.39165 -12.25193 -12.15338 -11.47227 -11.35591 -11.12226 -10.96795 -10.65003 -10.52690 -9.36500 -9.12876 -8.18359 -6.28013 -0.71807 -0.38432 0.75717 1.00461 1.40820 1.42104 1.54422 1.63713 1.99702 2.42457 2.57171 2.65486 2.76243 3.15314 3.26707 3.38329 3.41200 3.67496 3.81759 4.05347 4.27558 4.34352 4.37137 4.44902 4.75439 4.76426 4.82624 4.93639 5.02436 5.07027 5.20346 5.26924 5.31578 5.56880 5.82313 5.91585 6.04926 6.14155 6.31053 6.39913 6.47667 6.59915 6.90181 7.41170 8.93269 Molecular weight = 285.13amu Principal moments of inertia in cm(-1) A = 0.033826 B = 0.002252 C = 0.002237 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 827.565785 B =12432.647775 C =12516.423814 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.481 5.481 2 C 0.323 3.677 3 C -0.223 4.223 4 C 0.169 3.831 5 N -0.321 5.321 6 N -0.306 5.306 7 C 0.179 3.821 8 C -0.165 4.165 9 C 0.114 3.886 10 N -0.692 5.692 11 C 0.074 3.926 12 C -0.096 4.096 13 C 0.023 3.977 14 C -0.540 4.540 15 H 0.057 0.943 16 C -0.001 4.001 17 N -0.932 5.932 18 Si 0.960 3.040 19 H -0.264 1.264 20 H -0.279 1.279 21 H -0.279 1.279 22 C 0.228 3.772 23 N -0.504 5.504 24 C 0.308 3.692 25 H 0.248 0.752 26 H 0.214 0.786 27 H 0.109 0.891 28 H 0.069 0.931 29 H 0.344 0.656 30 H 0.071 0.929 31 H 0.033 0.967 32 H 0.050 0.950 33 H 0.048 0.952 34 H -0.006 1.006 35 H -0.006 1.006 36 H 0.263 0.737 37 H 0.212 0.788 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.034 -16.689 10.661 22.670 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.159 5.159 2 C 0.009 3.991 3 C -0.241 4.241 4 C -0.015 4.015 5 N -0.141 5.141 6 N -0.071 5.071 7 C 0.043 3.957 8 C -0.171 4.171 9 C -0.016 4.016 10 N -0.324 5.324 11 C -0.054 4.054 12 C -0.134 4.134 13 C -0.014 4.014 14 C -0.579 4.579 15 H 0.075 0.925 16 C -0.199 4.199 17 N -0.573 5.573 18 Si 0.785 3.215 19 H -0.188 1.188 20 H -0.204 1.204 21 H -0.205 1.205 22 C 0.048 3.952 23 N -0.217 5.217 24 C 0.072 3.928 25 H 0.264 0.736 26 H 0.231 0.769 27 H 0.127 0.873 28 H 0.087 0.913 29 H 0.163 0.837 30 H 0.090 0.910 31 H 0.051 0.949 32 H 0.069 0.931 33 H 0.067 0.933 34 H 0.012 0.988 35 H 0.012 0.988 36 H 0.071 0.929 37 H 0.228 0.772 Dipole moment (debyes) X Y Z Total from point charges -12.853 -16.590 10.505 23.469 hybrid contribution 1.556 0.638 0.177 1.691 sum -11.297 -15.952 10.681 22.275 Atomic orbital electron populations 1.81262 1.12628 1.12930 1.09103 1.24272 0.90968 0.91452 0.92363 1.15204 0.85280 1.26076 0.97548 1.24655 0.87047 0.90927 0.98875 1.77722 1.20952 1.24562 0.90913 1.47040 1.06400 1.40388 1.13318 1.22658 0.94090 0.91328 0.87622 1.20553 0.97666 1.03610 0.95264 1.20783 0.93495 0.88607 0.98693 1.60503 1.41978 1.19924 1.09996 1.21821 0.91336 0.94965 0.97315 1.21386 0.97719 0.95362 0.98909 1.18990 0.93427 0.94638 0.94387 1.21759 1.17625 0.98447 1.20025 0.92489 1.25938 0.96295 1.02683 0.94979 1.70087 1.23911 1.38453 1.24802 0.85466 0.78094 0.79650 0.78251 1.18786 1.20441 1.20518 1.24105 0.86919 0.85384 0.98748 1.68330 1.36093 1.15717 1.01519 1.20572 0.84356 0.95763 0.92091 0.73616 0.76896 0.87294 0.91301 0.83743 0.91046 0.94864 0.93130 0.93309 0.98799 0.98786 0.92853 0.77164 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.48 -13.33 18.54 19.00 0.35 -12.98 16 2 C 0.32 7.47 15.84 88.33 1.40 8.87 16 3 C -0.22 -4.20 6.03 -20.85 -0.13 -4.32 16 4 C 0.17 2.15 11.93 85.42 1.02 3.17 16 5 N -0.32 -5.08 12.58 -56.59 -0.71 -5.80 16 6 N -0.31 -4.93 3.87 -191.71 -0.74 -5.67 16 7 C 0.18 1.91 10.94 83.40 0.91 2.82 16 8 C -0.16 -1.72 5.37 -20.02 -0.11 -1.83 16 9 C 0.11 1.17 5.83 85.56 0.50 1.67 16 10 N -0.69 -12.40 6.49 -517.91 -3.36 -15.77 16 11 C 0.07 1.91 5.69 86.30 0.49 2.40 16 12 C -0.10 -3.46 5.41 30.59 0.17 -3.29 16 13 C 0.02 1.14 4.97 29.85 0.15 1.29 16 14 C -0.54 -29.76 9.11 25.60 0.23 -29.53 16 15 H 0.06 3.04 7.74 -2.91 -0.02 3.02 16 16 C 0.00 -0.07 5.46 84.65 0.46 0.39 16 17 N -0.93 -55.15 13.29 21.45 0.28 -54.87 16 18 Si 0.96 43.32 29.54 68.60 2.03 45.35 16 19 H -0.26 -11.41 7.11 99.48 0.71 -10.70 16 20 H -0.28 -12.25 7.11 99.48 0.71 -11.54 16 21 H -0.28 -12.34 7.11 99.48 0.71 -11.63 16 22 C 0.23 2.97 10.97 85.18 0.93 3.90 16 23 N -0.50 -9.90 10.47 -191.80 -2.01 -11.91 16 24 C 0.31 6.07 7.88 133.92 1.06 7.13 16 25 H 0.25 0.85 8.06 -2.91 -0.02 0.83 16 26 H 0.21 0.96 8.06 -2.91 -0.02 0.94 16 27 H 0.11 0.95 8.10 -2.39 -0.02 0.93 16 28 H 0.07 0.52 8.08 -2.39 -0.02 0.50 16 29 H 0.34 5.74 8.72 -89.69 -0.78 4.96 16 30 H 0.07 1.86 8.14 -2.39 -0.02 1.85 16 31 H 0.03 0.83 8.14 -2.39 -0.02 0.81 16 32 H 0.05 1.89 8.14 -2.39 -0.02 1.87 16 33 H 0.05 1.71 8.14 -2.39 -0.02 1.69 16 34 H -0.01 -0.34 8.14 -2.39 -0.02 -0.36 16 35 H -0.01 -0.33 8.14 -2.39 -0.02 -0.35 16 36 H 0.26 14.59 8.31 -92.71 -0.77 13.82 16 37 H 0.21 1.62 8.06 -2.91 -0.02 1.60 16 Total: -1.00 -73.97 335.51 3.25 -70.72 By element: Atomic # 1 Polarization: -2.09 SS G_CDS: 0.32 Total: -1.77 kcal Atomic # 6 Polarization: -14.40 SS G_CDS: 7.09 Total: -7.32 kcal Atomic # 7 Polarization: -100.80 SS G_CDS: -6.19 Total: -106.98 kcal Atomic # 14 Polarization: 43.32 SS G_CDS: 2.03 Total: 45.35 kcal Total: -73.97 3.25 -70.72 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000551993132.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 184.095 kcal (2) G-P(sol) polarization free energy of solvation -73.971 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 110.124 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.247 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.725 kcal (6) G-S(sol) free energy of system = (1) + (5) 113.371 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds