Wall clock time and date at job start Tue Mar 31 2020 06:04:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46908 * 109.47092 * 2 1 4 4 C 1.46898 * 110.99597 * 196.39793 * 3 2 1 5 5 C 1.50695 * 109.47737 * 66.04409 * 4 3 2 6 6 H 1.08008 * 119.99750 * 0.02562 * 5 4 3 7 7 C 1.37868 * 120.00558 * 179.97438 * 5 4 3 8 8 N 1.31517 * 119.99892 * 0.02562 * 7 5 4 9 9 Si 1.86805 * 120.00382 * 179.97438 * 7 5 4 10 10 H 1.48499 * 109.46558 * 60.00195 * 9 7 5 11 11 H 1.48502 * 109.47242 * 179.97438 * 9 7 5 12 12 H 1.48493 * 109.47281 * 300.00325 * 9 7 5 13 13 C 1.46894 * 110.99950 * 72.44197 * 3 2 1 14 14 C 1.50698 * 109.47156 * 199.48293 * 13 3 2 15 15 C 1.40009 * 120.31432 * 84.20116 * 14 13 3 16 16 N 1.31476 * 120.13884 * 179.97438 * 15 14 13 17 17 C 1.33408 * 120.85030 * 0.02562 * 16 15 14 18 18 C 1.40743 * 132.51039 * 179.97438 * 17 16 15 19 19 C 1.43200 * 126.51570 * 0.02562 * 18 17 16 20 20 N 9.53337 * 84.71961 * 0.89895 * 2 1 3 21 21 C 1.40560 * 106.96242 * 180.02562 * 18 17 16 22 22 N 1.30784 * 108.74765 * 359.97438 * 21 18 17 23 23 N 1.36720 * 120.77161 * 0.02562 * 17 16 15 24 24 C 1.35718 * 120.31721 * 263.92723 * 14 13 3 25 25 H 1.09007 * 109.46761 * 61.23740 * 1 2 3 26 26 H 1.08995 * 109.47320 * 181.23292 * 1 2 3 27 27 H 1.08998 * 109.47183 * 301.23951 * 1 2 3 28 28 H 1.08998 * 109.47259 * 239.99645 * 2 1 3 29 29 H 1.08998 * 109.46863 * 119.99352 * 2 1 3 30 30 H 1.09005 * 109.47180 * 306.03917 * 4 3 2 31 31 H 1.09001 * 109.46823 * 186.05143 * 4 3 2 32 32 H 0.97002 * 120.00282 * 180.02562 * 8 7 5 33 33 H 1.09001 * 109.47428 * 319.48691 * 13 3 2 34 34 H 1.09004 * 109.47005 * 79.48315 * 13 3 2 35 35 H 1.08002 * 119.93475 * 359.97438 * 15 14 13 36 36 H 1.07993 * 125.62742 * 179.97438 * 21 18 17 37 37 H 1.08001 * 120.42190 * 359.97438 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3851 0.0000 4 6 3.4356 1.4428 -0.3872 5 6 3.5817 1.0108 -1.8235 6 1 2.7098 0.7226 -2.3921 7 6 4.8282 0.9845 -2.4121 8 7 5.8898 1.3358 -1.7199 9 14 5.0094 0.4483 -4.1923 10 1 4.2197 1.3541 -5.0648 11 1 6.4406 0.5080 -4.5841 12 1 4.5118 -0.9426 -4.3435 13 6 1.8051 2.0193 1.3075 14 6 1.8591 3.5174 1.1540 15 6 0.7202 4.2287 0.7574 16 7 0.7711 5.5358 0.6251 17 6 1.9007 6.2042 0.8640 18 6 2.2281 7.5715 0.8012 19 6 1.3497 8.6422 0.4371 20 7 0.6527 9.4917 0.1489 21 6 3.5813 7.6863 1.1639 22 7 4.0482 6.4935 1.4281 23 7 3.0343 5.5457 1.2521 24 6 3.0107 4.1907 1.4043 25 1 -0.3633 0.4945 -0.9009 26 1 -0.3634 -1.0274 0.0221 27 1 -0.3633 0.5330 0.8786 28 1 1.8934 -0.5139 -0.8899 29 1 1.8933 -0.5137 0.8900 30 1 4.0148 0.7773 0.2531 31 1 3.8014 2.4635 -0.2756 32 1 6.7668 1.3177 -2.1341 33 1 0.8292 1.7288 1.6965 34 1 2.5828 1.6967 1.9998 35 1 -0.2020 3.7026 0.5597 36 1 4.1427 8.6073 1.2158 37 1 3.8980 3.6596 1.7158 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000567896422.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:04:21 Heat of formation + Delta-G solvation = 150.544804 kcal Electronic energy + Delta-G solvation = -21547.120199 eV Core-core repulsion = 18327.012289 eV Total energy + Delta-G solvation = -3220.107910 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 285.128 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -42.50208 -38.74242 -36.98326 -36.23745 -34.10363 -32.85545 -32.02729 -30.16528 -29.59609 -27.43025 -25.28571 -24.77312 -23.11304 -22.59145 -22.07372 -20.06511 -19.09804 -17.73701 -17.17163 -16.55511 -16.22118 -15.62075 -15.01785 -14.63436 -14.42974 -14.08483 -13.86799 -13.57152 -13.31154 -13.15339 -12.93334 -12.59851 -12.43564 -12.25890 -12.16305 -11.84956 -11.43771 -11.32211 -11.10491 -11.04505 -10.84902 -10.65942 -10.35918 -10.01644 -9.93303 -9.53478 -9.33047 -8.57163 -8.00986 -7.55120 -6.16794 -4.18553 0.36049 0.77003 1.84376 2.06839 2.82602 3.12619 3.25366 3.30738 3.33052 3.68053 3.75174 3.87997 4.31483 4.41883 4.49793 4.62420 4.76089 4.88566 5.14733 5.20390 5.28454 5.41954 5.50618 5.64417 5.76818 5.80653 5.91293 5.96064 6.04149 6.18457 6.30622 6.52901 6.59929 7.01914 7.10095 7.22687 7.47209 7.61225 7.78408 7.83971 7.96917 8.31995 8.88049 9.46763 10.93869 Molecular weight = 285.13amu Principal moments of inertia in cm(-1) A = 0.014614 B = 0.004886 C = 0.004177 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1915.480759 B = 5729.242690 C = 6701.070271 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.057 3.943 3 N -0.534 5.534 4 C 0.190 3.810 5 C -0.512 4.512 6 H 0.064 0.936 7 C 0.059 3.941 8 N -0.896 5.896 9 Si 0.897 3.103 10 H -0.276 1.276 11 H -0.287 1.287 12 H -0.276 1.276 13 C 0.100 3.900 14 C -0.156 4.156 15 C 0.226 3.774 16 N -0.477 5.477 17 C 0.321 3.679 18 C -0.210 4.210 19 C 0.310 3.690 20 N -0.447 5.447 21 C 0.146 3.854 22 N -0.304 5.304 23 N -0.295 5.295 24 C 0.183 3.817 25 H 0.060 0.940 26 H 0.049 0.951 27 H 0.046 0.954 28 H 0.090 0.910 29 H 0.022 0.978 30 H -0.006 1.006 31 H 0.028 0.972 32 H 0.263 0.737 33 H 0.088 0.912 34 H 0.046 0.954 35 H 0.186 0.814 36 H 0.208 0.792 37 H 0.186 0.814 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.655 2.353 9.277 11.657 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.071 4.071 3 N -0.259 5.259 4 C 0.066 3.934 5 C -0.551 4.551 6 H 0.082 0.918 7 C -0.143 4.143 8 N -0.535 5.535 9 Si 0.724 3.276 10 H -0.202 1.202 11 H -0.213 1.213 12 H -0.201 1.201 13 C -0.029 4.029 14 C -0.163 4.163 15 C 0.045 3.955 16 N -0.189 5.189 17 C 0.085 3.915 18 C -0.228 4.228 19 C -0.004 4.004 20 N -0.124 5.124 21 C -0.038 4.038 22 N -0.125 5.125 23 N -0.061 5.061 24 C 0.046 3.954 25 H 0.079 0.921 26 H 0.068 0.932 27 H 0.065 0.935 28 H 0.108 0.892 29 H 0.040 0.960 30 H 0.012 0.988 31 H 0.046 0.954 32 H 0.073 0.927 33 H 0.106 0.894 34 H 0.064 0.936 35 H 0.203 0.797 36 H 0.224 0.776 37 H 0.203 0.797 Dipole moment (debyes) X Y Z Total from point charges -7.300 3.989 8.589 11.957 hybrid contribution 1.143 -1.140 -0.421 1.669 sum -6.157 2.848 8.168 10.618 Atomic orbital electron populations 1.21842 0.96396 1.00545 1.01682 1.21986 0.94182 0.89431 1.01474 1.62153 1.23734 1.16706 1.23342 1.19799 0.80572 0.96769 0.96299 1.21058 0.92968 1.44745 0.96298 0.91782 1.24963 0.95809 0.95367 0.98210 1.69917 0.98738 1.48054 1.36840 0.86576 0.77020 0.79211 0.84753 1.20155 1.21287 1.20148 1.20864 1.02072 0.86710 0.93284 1.20582 0.92749 0.99073 1.03847 1.23499 0.98630 0.88025 0.85328 1.68243 1.22204 1.09655 1.18778 1.20360 0.83179 0.92695 0.95234 1.14989 0.93889 0.85966 1.27923 1.24067 0.92369 0.91907 0.92048 1.81215 1.08430 1.10557 1.12223 1.23997 0.91312 0.96685 0.91815 1.77733 1.08565 0.96342 1.29841 1.46845 1.10071 1.06749 1.42408 1.22201 1.00521 0.78734 0.93915 0.92098 0.93162 0.93539 0.89195 0.95976 0.98797 0.95426 0.92713 0.89405 0.93556 0.79747 0.77586 0.79661 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.77 10.00 37.16 0.37 -1.40 16 2 C 0.06 0.89 5.52 -3.82 -0.02 0.87 16 3 N -0.53 -9.21 4.37 -237.52 -1.04 -10.25 16 4 C 0.19 4.27 4.55 -4.98 -0.02 4.25 16 5 C -0.51 -13.15 8.28 -34.45 -0.29 -13.44 16 6 H 0.06 1.64 7.26 -52.48 -0.38 1.25 16 7 C 0.06 1.56 5.46 -17.82 -0.10 1.46 16 8 N -0.90 -25.07 13.29 55.43 0.74 -24.33 16 9 Si 0.90 20.74 29.54 -169.99 -5.02 15.72 16 10 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 11 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 12 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 13 C 0.10 1.29 4.98 -4.98 -0.02 1.27 16 14 C -0.16 -2.04 5.01 -104.86 -0.52 -2.57 16 15 C 0.23 2.83 10.99 -17.04 -0.19 2.64 16 16 N -0.48 -7.13 10.47 -11.97 -0.13 -7.26 16 17 C 0.32 4.95 7.88 -155.72 -1.23 3.73 16 18 C -0.21 -2.99 6.03 -106.15 -0.64 -3.63 16 19 C 0.31 4.71 15.84 -22.47 -0.36 4.36 16 20 N -0.45 -7.45 18.54 41.84 0.78 -6.67 16 21 C 0.15 1.76 11.93 -17.12 -0.20 1.55 16 22 N -0.30 -4.44 12.58 30.76 0.39 -4.05 16 23 N -0.29 -4.47 3.87 -11.95 -0.05 -4.51 16 24 C 0.18 2.57 9.66 -16.43 -0.16 2.41 16 25 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 26 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 27 H 0.05 0.47 6.53 -51.93 -0.34 0.13 16 28 H 0.09 1.64 6.59 -51.93 -0.34 1.30 16 29 H 0.02 0.33 8.05 -51.93 -0.42 -0.09 16 30 H -0.01 -0.14 8.12 -51.93 -0.42 -0.56 16 31 H 0.03 0.66 6.37 -51.93 -0.33 0.33 16 32 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 33 H 0.09 0.88 6.25 -51.93 -0.32 0.56 16 34 H 0.05 0.58 7.90 -51.93 -0.41 0.17 16 35 H 0.19 1.72 8.06 -52.49 -0.42 1.30 16 36 H 0.21 1.53 8.06 -52.49 -0.42 1.11 16 37 H 0.19 2.43 8.01 -52.49 -0.42 2.00 16 LS Contribution 325.88 15.07 4.91 4.91 Total: -1.00 -31.29 325.88 -7.01 -38.30 By element: Atomic # 1 Polarization: 0.85 SS G_CDS: -4.21 Total: -3.36 kcal Atomic # 6 Polarization: 4.89 SS G_CDS: -3.38 Total: 1.51 kcal Atomic # 7 Polarization: -57.76 SS G_CDS: 0.69 Total: -57.07 kcal Atomic # 14 Polarization: 20.74 SS G_CDS: -5.02 Total: 15.72 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -31.29 -7.01 -38.30 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000567896422.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 188.842 kcal (2) G-P(sol) polarization free energy of solvation -31.285 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 157.557 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.012 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.297 kcal (6) G-S(sol) free energy of system = (1) + (5) 150.545 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds