Wall clock time and date at job start Tue Mar 31 2020 06:04:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46908 * 109.47092 * 2 1 4 4 C 1.46898 * 110.99597 * 196.39793 * 3 2 1 5 5 C 1.50695 * 109.47737 * 66.04409 * 4 3 2 6 6 H 1.08008 * 119.99750 * 0.02562 * 5 4 3 7 7 C 1.37868 * 120.00558 * 179.97438 * 5 4 3 8 8 N 1.31517 * 119.99892 * 0.02562 * 7 5 4 9 9 Si 1.86805 * 120.00382 * 179.97438 * 7 5 4 10 10 H 1.48499 * 109.46558 * 60.00195 * 9 7 5 11 11 H 1.48502 * 109.47242 * 179.97438 * 9 7 5 12 12 H 1.48493 * 109.47281 * 300.00325 * 9 7 5 13 13 C 1.46894 * 110.99950 * 72.44197 * 3 2 1 14 14 C 1.50698 * 109.47156 * 199.48293 * 13 3 2 15 15 C 1.40009 * 120.31432 * 84.20116 * 14 13 3 16 16 N 1.31476 * 120.13884 * 179.97438 * 15 14 13 17 17 C 1.33408 * 120.85030 * 0.02562 * 16 15 14 18 18 C 1.40743 * 132.51039 * 179.97438 * 17 16 15 19 19 C 1.43200 * 126.51570 * 0.02562 * 18 17 16 20 20 N 9.53337 * 84.71961 * 0.89895 * 2 1 3 21 21 C 1.40560 * 106.96242 * 180.02562 * 18 17 16 22 22 N 1.30784 * 108.74765 * 359.97438 * 21 18 17 23 23 N 1.36720 * 120.77161 * 0.02562 * 17 16 15 24 24 C 1.35718 * 120.31721 * 263.92723 * 14 13 3 25 25 H 1.09007 * 109.46761 * 61.23740 * 1 2 3 26 26 H 1.08995 * 109.47320 * 181.23292 * 1 2 3 27 27 H 1.08998 * 109.47183 * 301.23951 * 1 2 3 28 28 H 1.08998 * 109.47259 * 239.99645 * 2 1 3 29 29 H 1.08998 * 109.46863 * 119.99352 * 2 1 3 30 30 H 1.09005 * 109.47180 * 306.03917 * 4 3 2 31 31 H 1.09001 * 109.46823 * 186.05143 * 4 3 2 32 32 H 0.97002 * 120.00282 * 180.02562 * 8 7 5 33 33 H 1.09001 * 109.47428 * 319.48691 * 13 3 2 34 34 H 1.09004 * 109.47005 * 79.48315 * 13 3 2 35 35 H 1.08002 * 119.93475 * 359.97438 * 15 14 13 36 36 H 1.07993 * 125.62742 * 179.97438 * 21 18 17 37 37 H 1.08001 * 120.42190 * 359.97438 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3851 0.0000 4 6 3.4356 1.4428 -0.3872 5 6 3.5817 1.0108 -1.8235 6 1 2.7098 0.7226 -2.3921 7 6 4.8282 0.9845 -2.4121 8 7 5.8898 1.3358 -1.7199 9 14 5.0094 0.4483 -4.1923 10 1 4.2197 1.3541 -5.0648 11 1 6.4406 0.5080 -4.5841 12 1 4.5118 -0.9426 -4.3435 13 6 1.8051 2.0193 1.3075 14 6 1.8591 3.5174 1.1540 15 6 0.7202 4.2287 0.7574 16 7 0.7711 5.5358 0.6251 17 6 1.9007 6.2042 0.8640 18 6 2.2281 7.5715 0.8012 19 6 1.3497 8.6422 0.4371 20 7 0.6527 9.4917 0.1489 21 6 3.5813 7.6863 1.1639 22 7 4.0482 6.4935 1.4281 23 7 3.0343 5.5457 1.2521 24 6 3.0107 4.1907 1.4043 25 1 -0.3633 0.4945 -0.9009 26 1 -0.3634 -1.0274 0.0221 27 1 -0.3633 0.5330 0.8786 28 1 1.8934 -0.5139 -0.8899 29 1 1.8933 -0.5137 0.8900 30 1 4.0148 0.7773 0.2531 31 1 3.8014 2.4635 -0.2756 32 1 6.7668 1.3177 -2.1341 33 1 0.8292 1.7288 1.6965 34 1 2.5828 1.6967 1.9998 35 1 -0.2020 3.7026 0.5597 36 1 4.1427 8.6073 1.2158 37 1 3.8980 3.6596 1.7158 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000567896422.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:04:20 Heat of formation + Delta-G solvation = 130.914722 kcal Electronic energy + Delta-G solvation = -21547.971423 eV Core-core repulsion = 18327.012289 eV Total energy + Delta-G solvation = -3220.959135 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 285.128 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -43.57528 -39.85650 -38.26815 -37.45199 -35.23091 -34.75028 -33.12951 -31.39563 -30.83109 -28.91987 -26.64148 -25.85848 -24.35204 -24.09277 -23.13618 -21.37653 -20.21554 -18.83853 -18.52325 -18.15623 -17.35723 -16.91141 -16.46025 -15.95881 -15.81231 -15.31788 -15.03290 -14.62290 -14.51992 -14.33174 -14.20801 -14.00120 -13.75161 -13.65012 -13.50501 -13.00386 -12.80088 -12.63624 -12.55295 -12.41941 -12.28130 -12.14088 -11.78909 -11.52103 -11.28956 -10.96046 -10.58817 -10.58238 -9.14178 -8.95767 -8.19718 -6.26683 -0.68633 -0.31830 0.78306 1.03237 1.40711 1.42336 1.49279 1.64470 2.03742 2.40284 2.58932 2.68742 2.81551 3.14785 3.35035 3.39672 3.44862 3.70614 3.85738 4.11354 4.29677 4.34955 4.41983 4.62530 4.67747 4.76151 4.87716 4.95218 5.06292 5.18436 5.18671 5.28805 5.29747 5.45550 5.59843 5.68675 6.09795 6.17770 6.37454 6.40758 6.60645 6.66645 6.90094 7.42693 8.90092 Molecular weight = 285.13amu Principal moments of inertia in cm(-1) A = 0.014614 B = 0.004886 C = 0.004177 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1915.480759 B = 5729.242690 C = 6701.070271 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.055 3.945 3 N -0.540 5.540 4 C 0.205 3.795 5 C -0.520 4.520 6 H 0.061 0.939 7 C 0.007 3.993 8 N -0.930 5.930 9 Si 0.953 3.047 10 H -0.275 1.275 11 H -0.288 1.288 12 H -0.266 1.266 13 C 0.103 3.897 14 C -0.154 4.154 15 C 0.234 3.766 16 N -0.499 5.499 17 C 0.307 3.693 18 C -0.224 4.224 19 C 0.327 3.673 20 N -0.477 5.477 21 C 0.166 3.834 22 N -0.331 5.331 23 N -0.305 5.305 24 C 0.169 3.831 25 H 0.052 0.948 26 H 0.066 0.934 27 H 0.073 0.927 28 H 0.055 0.945 29 H 0.030 0.970 30 H -0.031 1.031 31 H 0.011 0.989 32 H 0.262 0.738 33 H 0.129 0.871 34 H 0.051 0.949 35 H 0.221 0.779 36 H 0.251 0.749 37 H 0.187 0.813 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.094 1.949 9.595 12.703 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.072 4.072 3 N -0.264 5.264 4 C 0.079 3.921 5 C -0.558 4.558 6 H 0.079 0.921 7 C -0.192 4.192 8 N -0.571 5.571 9 Si 0.779 3.221 10 H -0.201 1.201 11 H -0.213 1.213 12 H -0.191 1.191 13 C -0.026 4.026 14 C -0.160 4.160 15 C 0.055 3.945 16 N -0.211 5.211 17 C 0.071 3.929 18 C -0.242 4.242 19 C 0.014 3.986 20 N -0.156 5.156 21 C -0.018 4.018 22 N -0.151 5.151 23 N -0.070 5.070 24 C 0.033 3.967 25 H 0.071 0.929 26 H 0.085 0.915 27 H 0.092 0.908 28 H 0.074 0.926 29 H 0.048 0.952 30 H -0.013 1.013 31 H 0.029 0.971 32 H 0.071 0.929 33 H 0.146 0.854 34 H 0.069 0.931 35 H 0.238 0.762 36 H 0.267 0.733 37 H 0.204 0.796 Dipole moment (debyes) X Y Z Total from point charges -8.763 3.562 8.915 12.998 hybrid contribution 1.565 -1.059 -0.464 1.946 sum -7.198 2.503 8.451 11.379 Atomic orbital electron populations 1.21757 0.92988 1.02045 1.02581 1.22011 0.96837 0.88181 1.00205 1.62027 1.19995 1.18067 1.26349 1.19416 0.83575 0.94760 0.94361 1.21463 0.92728 1.43685 0.97946 0.92065 1.25729 0.95784 0.95757 1.01881 1.70031 0.99026 1.49687 1.38342 0.85671 0.76779 0.79211 0.80409 1.20064 1.21318 1.19051 1.21002 1.04416 0.86016 0.91184 1.20676 0.92663 0.99149 1.03538 1.24073 0.99562 0.87372 0.83489 1.68313 1.22167 1.10714 1.19904 1.20663 0.83541 0.93311 0.95356 1.15137 0.94705 0.85443 1.28928 1.24112 0.91807 0.91492 0.91196 1.81224 1.09288 1.11544 1.13503 1.24685 0.90517 0.97288 0.89286 1.77710 1.09220 0.97120 1.31066 1.46941 1.10172 1.07052 1.42858 1.22435 1.01161 0.78788 0.94272 0.92868 0.91541 0.90786 0.92612 0.95223 1.01349 0.97139 0.92947 0.85362 0.93105 0.76243 0.73342 0.79639 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.81 10.00 71.98 0.72 -2.09 16 2 C 0.06 1.64 5.52 86.30 0.48 2.11 16 3 N -0.54 -17.91 4.37 -905.37 -3.96 -21.86 16 4 C 0.21 9.31 4.55 85.56 0.39 9.70 16 5 C -0.52 -26.97 8.28 25.60 0.21 -26.76 16 6 H 0.06 3.14 7.26 -2.91 -0.02 3.12 16 7 C 0.01 0.37 5.46 84.65 0.46 0.83 16 8 N -0.93 -53.06 13.29 21.44 0.28 -52.78 16 9 Si 0.95 42.73 29.54 68.60 2.03 44.76 16 10 H -0.28 -12.20 7.11 99.48 0.71 -11.50 16 11 H -0.29 -12.80 7.11 99.48 0.71 -12.10 16 12 H -0.27 -11.36 7.11 99.48 0.71 -10.65 16 13 C 0.10 2.40 4.98 85.56 0.43 2.82 16 14 C -0.15 -3.78 5.01 -20.02 -0.10 -3.88 16 15 C 0.23 5.36 10.99 85.18 0.94 6.29 16 16 N -0.50 -14.27 10.47 -191.79 -2.01 -16.28 16 17 C 0.31 9.27 7.88 133.92 1.06 10.33 16 18 C -0.22 -6.19 6.03 -20.85 -0.13 -6.31 16 19 C 0.33 9.70 15.84 88.33 1.40 11.10 16 20 N -0.48 -15.68 18.54 19.00 0.35 -15.32 16 21 C 0.17 3.76 11.93 85.42 1.02 4.78 16 22 N -0.33 -9.45 12.58 -56.60 -0.71 -10.17 16 23 N -0.30 -9.13 3.87 -191.71 -0.74 -9.87 16 24 C 0.17 4.73 9.66 83.40 0.81 5.53 16 25 H 0.05 1.20 8.14 -2.38 -0.02 1.18 16 26 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 27 H 0.07 1.13 6.53 -2.39 -0.02 1.11 16 28 H 0.06 2.02 6.59 -2.39 -0.02 2.01 16 29 H 0.03 0.83 8.05 -2.39 -0.02 0.81 16 30 H -0.03 -1.55 8.12 -2.38 -0.02 -1.57 16 31 H 0.01 0.51 6.37 -2.39 -0.02 0.50 16 32 H 0.26 14.34 8.31 -92.71 -0.77 13.57 16 33 H 0.13 1.99 6.25 -2.39 -0.01 1.97 16 34 H 0.05 1.19 7.90 -2.38 -0.02 1.17 16 35 H 0.22 3.24 8.06 -2.91 -0.02 3.21 16 36 H 0.25 3.03 8.06 -2.91 -0.02 3.01 16 37 H 0.19 5.00 8.01 -2.91 -0.02 4.97 16 Total: -1.00 -69.11 325.88 4.02 -65.09 By element: Atomic # 1 Polarization: 0.87 SS G_CDS: 1.10 Total: 1.97 kcal Atomic # 6 Polarization: 6.79 SS G_CDS: 7.68 Total: 14.46 kcal Atomic # 7 Polarization: -119.50 SS G_CDS: -6.78 Total: -126.28 kcal Atomic # 14 Polarization: 42.73 SS G_CDS: 2.03 Total: 44.76 kcal Total: -69.11 4.02 -65.09 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000567896422.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 196.005 kcal (2) G-P(sol) polarization free energy of solvation -69.112 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 126.893 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.022 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.090 kcal (6) G-S(sol) free energy of system = (1) + (5) 130.915 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds