Wall clock time and date at job start Tue Mar 31 2020 06:31:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86805 * 120.00409 * 2 1 4 4 H 1.48501 * 109.47089 * 239.99965 * 3 2 1 5 5 H 1.48498 * 109.46569 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.46915 * 119.99758 * 3 2 1 7 7 C 1.37883 * 119.99950 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00158 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99840 * 0.02562 * 7 2 1 10 10 N 1.46893 * 109.47060 * 179.97438 * 9 7 2 11 11 C 1.46905 * 111.00072 * 179.97438 * 10 9 7 12 12 C 1.53003 * 109.47088 * 180.02562 * 11 10 9 13 13 C 1.52996 * 109.46883 * 180.02562 * 12 11 10 14 14 O 1.42908 * 109.47069 * 179.97438 * 13 12 11 15 15 C 1.35877 * 116.99873 * 179.97438 * 14 13 12 16 16 C 1.39861 * 119.57127 * 0.22972 * 15 14 13 17 17 C 1.35980 * 120.92921 * 180.27784 * 16 15 14 18 18 C 1.40586 * 119.73558 * 359.75237 * 17 16 15 19 19 C 1.40529 * 121.21846 * 180.02562 * 18 17 16 20 20 C 1.36100 * 119.66970 * 180.02562 * 19 18 17 21 21 C 1.39374 * 120.99805 * 359.95328 * 20 19 18 22 22 C 1.36097 * 120.97840 * 359.97438 * 21 20 19 23 23 C 1.40578 * 119.65789 * 0.02572 * 22 21 20 24 24 C 1.36571 * 119.56729 * 179.97438 * 15 14 13 25 25 H 0.97006 * 119.99819 * 0.02562 * 1 2 3 26 26 H 1.08997 * 109.46902 * 59.99527 * 9 7 2 27 27 H 1.08999 * 109.46931 * 299.99548 * 9 7 2 28 28 H 1.00906 * 111.00273 * 303.95231 * 10 9 7 29 29 H 1.08995 * 109.47067 * 59.99851 * 11 10 9 30 30 H 1.09002 * 109.46711 * 300.00034 * 11 10 9 31 31 H 1.08995 * 109.47590 * 59.99802 * 12 11 10 32 32 H 1.09002 * 109.46605 * 299.99702 * 12 11 10 33 33 H 1.08995 * 109.47222 * 59.99512 * 13 12 11 34 34 H 1.09002 * 109.47204 * 299.99271 * 13 12 11 35 35 H 1.07996 * 119.53253 * 0.02562 * 16 15 14 36 36 H 1.08005 * 120.13174 * 179.77300 * 17 16 15 37 37 H 1.08001 * 120.16662 * 359.97438 * 19 18 17 38 38 H 1.08006 * 119.50126 * 179.97438 * 20 19 18 39 39 H 1.08000 * 119.51424 * 180.02562 * 21 20 19 40 40 H 1.07994 * 120.16763 * 180.02562 * 22 21 20 41 41 H 1.08002 * 120.18981 * 0.02562 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 3.1030 1.6963 -1.2125 5 1 1.2842 2.7464 -0.0006 6 1 3.1030 1.6963 1.2126 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 7 2.2055 -3.6157 0.0005 11 6 1.5051 -4.9071 0.0011 12 6 2.5301 -6.0431 0.0018 13 6 1.8006 -7.3880 0.0018 14 8 2.7579 -8.4491 0.0018 15 6 2.2722 -9.7181 0.0023 16 6 0.8894 -9.9278 -0.0021 17 6 0.3733 -11.1859 0.0040 18 6 1.2380 -12.2943 0.0095 19 6 0.7385 -13.6078 0.0153 20 6 1.6044 -14.6578 0.0211 21 6 2.9828 -14.4516 0.0204 22 6 3.5029 -13.1939 0.0134 23 6 2.6398 -12.0843 0.0073 24 6 3.1406 -10.7721 0.0018 25 1 -0.4850 0.8401 -0.0004 26 1 0.6246 -2.5570 -0.8896 27 1 0.6240 -2.5567 0.8903 28 1 2.8404 -3.5487 -0.7809 29 1 0.8800 -4.9818 -0.8885 30 1 0.8806 -4.9812 0.8914 31 1 3.1550 -5.9683 0.8917 32 1 3.1549 -5.9691 -0.8883 33 1 1.1760 -7.4626 -0.8883 34 1 1.1755 -7.4623 0.8916 35 1 0.2222 -9.0786 -0.0062 36 1 -0.6967 -11.3329 0.0042 37 1 -0.3272 -13.7832 0.0160 38 1 1.2175 -15.6662 0.0260 39 1 3.6480 -15.3023 0.0247 40 1 4.5731 -13.0493 0.0125 41 1 4.2065 -10.5976 0.0014 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000572714627.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:31:32 Heat of formation + Delta-G solvation = -7.897541 kcal Electronic energy + Delta-G solvation = -20235.096390 eV Core-core repulsion = 17079.365496 eV Total energy + Delta-G solvation = -3155.730894 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 285.147 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -40.83173 -39.12261 -36.21910 -35.52531 -33.17259 -32.79495 -31.31103 -30.09488 -29.08154 -26.88224 -24.58510 -23.72757 -22.63982 -22.22447 -21.36637 -21.04944 -18.49336 -17.51999 -16.88850 -16.44372 -16.30675 -15.75270 -15.02409 -14.90653 -14.66916 -14.36997 -13.99178 -13.78818 -13.55726 -13.29117 -13.23114 -13.11733 -12.52263 -12.15324 -11.84640 -11.63861 -11.50406 -11.41277 -11.10336 -10.93889 -10.81900 -10.71026 -10.66992 -10.46919 -10.03008 -9.92617 -9.22850 -8.65206 -8.49933 -7.90651 -7.36159 -6.05293 -4.07505 0.28410 0.79065 1.80944 2.74056 3.05386 3.32952 3.36591 3.40009 3.87234 4.31570 4.41601 4.54541 4.63375 4.64951 4.88617 4.91828 4.93857 4.98187 5.05287 5.14016 5.22991 5.30690 5.40924 5.51606 5.56768 5.63317 5.70863 5.81748 5.90739 5.95394 5.97094 6.10397 6.22867 6.27658 6.35473 6.42016 6.50332 6.68773 7.19627 7.27498 7.37601 7.75309 8.09314 8.34144 8.56699 9.01281 9.57469 11.05804 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.062178 B = 0.001978 C = 0.001922 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 450.213921 B =14149.836065 C =14566.949207 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.055 3.945 3 Si 0.901 3.099 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.276 1.276 7 C -0.516 4.516 8 H 0.062 0.938 9 C 0.194 3.806 10 N -0.690 5.690 11 C 0.063 3.937 12 C -0.115 4.115 13 C 0.060 3.940 14 O -0.313 6.313 15 C 0.141 3.859 16 C -0.188 4.188 17 C -0.067 4.067 18 C -0.087 4.087 19 C -0.093 4.093 20 C -0.134 4.134 21 C -0.109 4.109 22 C -0.115 4.115 23 C -0.012 4.012 24 C -0.162 4.162 25 H 0.262 0.738 26 H -0.013 1.013 27 H 0.028 0.972 28 H 0.330 0.670 29 H 0.020 0.980 30 H 0.066 0.934 31 H 0.081 0.919 32 H 0.070 0.930 33 H 0.061 0.939 34 H 0.064 0.936 35 H 0.133 0.867 36 H 0.131 0.869 37 H 0.125 0.875 38 H 0.121 0.879 39 H 0.122 0.878 40 H 0.127 0.873 41 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.082 -29.369 -0.788 29.453 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.146 4.146 3 Si 0.729 3.271 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.201 1.201 7 C -0.555 4.555 8 H 0.081 0.919 9 C 0.067 3.933 10 N -0.320 5.320 11 C -0.067 4.067 12 C -0.153 4.153 13 C -0.015 4.015 14 O -0.226 6.226 15 C 0.095 3.905 16 C -0.206 4.206 17 C -0.085 4.085 18 C -0.088 4.088 19 C -0.111 4.111 20 C -0.152 4.152 21 C -0.127 4.127 22 C -0.133 4.133 23 C -0.012 4.012 24 C -0.181 4.181 25 H 0.072 0.928 26 H 0.005 0.995 27 H 0.046 0.954 28 H 0.146 0.854 29 H 0.038 0.962 30 H 0.085 0.915 31 H 0.099 0.901 32 H 0.088 0.912 33 H 0.080 0.920 34 H 0.082 0.918 35 H 0.151 0.849 36 H 0.149 0.851 37 H 0.143 0.857 38 H 0.139 0.861 39 H 0.140 0.860 40 H 0.145 0.855 41 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 2.187 -29.133 -0.095 29.215 hybrid contribution -0.280 0.949 -0.905 1.341 sum 1.907 -28.184 -1.001 28.266 Atomic orbital electron populations 1.69952 1.06102 1.26954 1.50757 1.25002 0.94906 0.99430 0.95275 0.86514 0.79400 0.82522 0.78684 1.20244 1.21324 1.20110 1.21154 0.93538 0.90216 1.50584 0.91931 1.19562 0.90581 0.87311 0.95828 1.60631 1.21287 1.01052 1.49068 1.21740 0.94885 0.90069 1.00024 1.21541 0.99238 0.90469 1.04047 1.22906 0.91427 0.85802 1.01384 1.86110 1.36465 1.12035 1.88012 1.18714 0.91845 0.84808 0.95098 1.21181 0.94381 0.98813 1.06238 1.20903 0.99473 0.91330 0.96803 1.18067 0.92731 0.93864 1.04102 1.21001 0.99721 0.91496 0.98841 1.20796 0.93459 0.99010 1.01957 1.20855 0.95359 0.97091 0.99348 1.20986 0.99406 0.91858 1.01080 1.17779 0.92463 0.92879 0.98087 1.20156 0.99762 0.89502 1.08695 0.92824 0.99542 0.95362 0.85362 0.96174 0.91549 0.90060 0.91176 0.92025 0.91777 0.84895 0.85091 0.85703 0.86142 0.86049 0.85504 0.84758 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.87 13.29 55.43 0.74 -26.13 16 2 C 0.06 1.59 5.46 -17.82 -0.10 1.49 16 3 Si 0.90 21.73 29.54 -169.99 -5.02 16.70 16 4 H -0.28 -6.54 7.11 56.52 0.40 -6.13 16 5 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 6 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 7 C -0.52 -14.72 9.32 -34.44 -0.32 -15.04 16 8 H 0.06 1.75 7.81 -52.49 -0.41 1.34 16 9 C 0.19 5.10 5.44 -4.98 -0.03 5.07 16 10 N -0.69 -14.75 6.49 -115.06 -0.75 -15.50 16 11 C 0.06 1.07 5.69 -3.82 -0.02 1.05 16 12 C -0.11 -1.61 5.84 -26.73 -0.16 -1.76 16 13 C 0.06 0.72 4.73 37.16 0.18 0.90 16 14 O -0.31 -4.12 10.11 -19.35 -0.20 -4.31 16 15 C 0.14 1.71 6.63 -39.58 -0.26 1.45 16 16 C -0.19 -1.98 8.93 -39.79 -0.36 -2.34 16 17 C -0.07 -0.64 9.76 -39.51 -0.39 -1.02 16 18 C -0.09 -0.89 5.74 -106.81 -0.61 -1.50 16 19 C -0.09 -0.76 9.77 -39.49 -0.39 -1.15 16 20 C -0.13 -1.01 9.95 -39.93 -0.40 -1.40 16 21 C -0.11 -0.83 9.95 -39.93 -0.40 -1.23 16 22 C -0.12 -1.02 9.77 -39.47 -0.39 -1.40 16 23 C -0.01 -0.13 5.74 -106.84 -0.61 -0.74 16 24 C -0.16 -1.85 9.68 -39.35 -0.38 -2.23 16 25 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 26 H -0.01 -0.37 8.14 -51.93 -0.42 -0.79 16 27 H 0.03 0.80 8.14 -51.93 -0.42 0.37 16 28 H 0.33 6.70 8.72 -39.29 -0.34 6.36 16 29 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 30 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 31 H 0.08 1.19 8.14 -51.93 -0.42 0.77 16 32 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 33 H 0.06 0.68 7.62 -51.93 -0.40 0.28 16 34 H 0.06 0.71 7.64 -51.93 -0.40 0.31 16 35 H 0.13 1.22 6.21 -52.49 -0.33 0.89 16 36 H 0.13 0.90 8.06 -52.48 -0.42 0.48 16 37 H 0.13 0.74 8.06 -52.49 -0.42 0.32 16 38 H 0.12 0.62 8.06 -52.48 -0.42 0.20 16 39 H 0.12 0.64 8.06 -52.49 -0.42 0.22 16 40 H 0.13 0.88 8.06 -52.49 -0.42 0.46 16 41 H 0.13 1.37 8.06 -52.49 -0.42 0.95 16 LS Contribution 346.67 15.07 5.22 5.22 Total: -1.00 -31.52 346.67 -10.71 -42.22 By element: Atomic # 1 Polarization: 7.73 SS G_CDS: -6.08 Total: 1.64 kcal Atomic # 6 Polarization: -15.23 SS G_CDS: -4.62 Total: -19.86 kcal Atomic # 7 Polarization: -41.62 SS G_CDS: -0.01 Total: -41.63 kcal Atomic # 8 Polarization: -4.12 SS G_CDS: -0.20 Total: -4.31 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -5.02 Total: 16.70 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -31.52 -10.71 -42.22 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000572714627.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.327 kcal (2) G-P(sol) polarization free energy of solvation -31.517 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.810 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.708 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.224 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.898 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds