Wall clock time and date at job start Tue Mar 31 2020 06:31:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86805 * 120.00409 * 2 1 4 4 H 1.48501 * 109.47089 * 239.99965 * 3 2 1 5 5 H 1.48498 * 109.46569 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.46915 * 119.99758 * 3 2 1 7 7 C 1.37883 * 119.99950 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00158 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99840 * 0.02562 * 7 2 1 10 10 N 1.46893 * 109.47060 * 179.97438 * 9 7 2 11 11 C 1.46905 * 111.00072 * 179.97438 * 10 9 7 12 12 C 1.53003 * 109.47088 * 180.02562 * 11 10 9 13 13 C 1.52996 * 109.46883 * 180.02562 * 12 11 10 14 14 O 1.42908 * 109.47069 * 179.97438 * 13 12 11 15 15 C 1.35877 * 116.99873 * 179.97438 * 14 13 12 16 16 C 1.39861 * 119.57127 * 0.22972 * 15 14 13 17 17 C 1.35980 * 120.92921 * 180.27784 * 16 15 14 18 18 C 1.40586 * 119.73558 * 359.75237 * 17 16 15 19 19 C 1.40529 * 121.21846 * 180.02562 * 18 17 16 20 20 C 1.36100 * 119.66970 * 180.02562 * 19 18 17 21 21 C 1.39374 * 120.99805 * 359.95328 * 20 19 18 22 22 C 1.36097 * 120.97840 * 359.97438 * 21 20 19 23 23 C 1.40578 * 119.65789 * 0.02572 * 22 21 20 24 24 C 1.36571 * 119.56729 * 179.97438 * 15 14 13 25 25 H 0.97006 * 119.99819 * 0.02562 * 1 2 3 26 26 H 1.08997 * 109.46902 * 59.99527 * 9 7 2 27 27 H 1.08999 * 109.46931 * 299.99548 * 9 7 2 28 28 H 1.00906 * 111.00273 * 303.95231 * 10 9 7 29 29 H 1.08995 * 109.47067 * 59.99851 * 11 10 9 30 30 H 1.09002 * 109.46711 * 300.00034 * 11 10 9 31 31 H 1.08995 * 109.47590 * 59.99802 * 12 11 10 32 32 H 1.09002 * 109.46605 * 299.99702 * 12 11 10 33 33 H 1.08995 * 109.47222 * 59.99512 * 13 12 11 34 34 H 1.09002 * 109.47204 * 299.99271 * 13 12 11 35 35 H 1.07996 * 119.53253 * 0.02562 * 16 15 14 36 36 H 1.08005 * 120.13174 * 179.77300 * 17 16 15 37 37 H 1.08001 * 120.16662 * 359.97438 * 19 18 17 38 38 H 1.08006 * 119.50126 * 179.97438 * 20 19 18 39 39 H 1.08000 * 119.51424 * 180.02562 * 21 20 19 40 40 H 1.07994 * 120.16763 * 180.02562 * 22 21 20 41 41 H 1.08002 * 120.18981 * 0.02562 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 3.1030 1.6963 -1.2125 5 1 1.2842 2.7464 -0.0006 6 1 3.1030 1.6963 1.2126 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 7 2.2055 -3.6157 0.0005 11 6 1.5051 -4.9071 0.0011 12 6 2.5301 -6.0431 0.0018 13 6 1.8006 -7.3880 0.0018 14 8 2.7579 -8.4491 0.0018 15 6 2.2722 -9.7181 0.0023 16 6 0.8894 -9.9278 -0.0021 17 6 0.3733 -11.1859 0.0040 18 6 1.2380 -12.2943 0.0095 19 6 0.7385 -13.6078 0.0153 20 6 1.6044 -14.6578 0.0211 21 6 2.9828 -14.4516 0.0204 22 6 3.5029 -13.1939 0.0134 23 6 2.6398 -12.0843 0.0073 24 6 3.1406 -10.7721 0.0018 25 1 -0.4850 0.8401 -0.0004 26 1 0.6246 -2.5570 -0.8896 27 1 0.6240 -2.5567 0.8903 28 1 2.8404 -3.5487 -0.7809 29 1 0.8800 -4.9818 -0.8885 30 1 0.8806 -4.9812 0.8914 31 1 3.1550 -5.9683 0.8917 32 1 3.1549 -5.9691 -0.8883 33 1 1.1760 -7.4626 -0.8883 34 1 1.1755 -7.4623 0.8916 35 1 0.2222 -9.0786 -0.0062 36 1 -0.6967 -11.3329 0.0042 37 1 -0.3272 -13.7832 0.0160 38 1 1.2175 -15.6662 0.0260 39 1 3.6480 -15.3023 0.0247 40 1 4.5731 -13.0493 0.0125 41 1 4.2065 -10.5976 0.0014 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000572714627.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:31:31 Heat of formation + Delta-G solvation = -25.956270 kcal Electronic energy + Delta-G solvation = -20235.879475 eV Core-core repulsion = 17079.365496 eV Total energy + Delta-G solvation = -3156.513979 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 285.147 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.58235 -39.94568 -37.62735 -36.49397 -34.93252 -33.71573 -32.79212 -30.78436 -29.96196 -28.62668 -25.95919 -24.53133 -23.71654 -23.14392 -22.90699 -22.21932 -19.34825 -18.53122 -18.19739 -17.60711 -17.43059 -16.72134 -16.56781 -16.19638 -15.69015 -15.43857 -15.07192 -14.79410 -14.56788 -14.45819 -14.16098 -14.06516 -13.90800 -13.64840 -13.20553 -12.96444 -12.73059 -12.60924 -12.44322 -12.25364 -12.06049 -11.98932 -11.87060 -11.61548 -11.46535 -11.32677 -10.76473 -10.66552 -9.36420 -9.16749 -8.64948 -8.23779 -6.35161 -0.40252 0.06880 1.11038 1.41437 1.45047 1.53110 2.04321 2.11146 2.40261 3.09542 3.16870 3.54115 3.66147 3.87411 3.89952 3.93140 4.06324 4.15717 4.16891 4.32268 4.33557 4.38031 4.44961 4.47227 4.52772 4.65194 4.81552 4.92739 5.01843 5.04307 5.10496 5.18641 5.24506 5.27225 5.27965 5.32970 5.60072 5.60882 5.62874 5.76599 5.99937 6.06965 6.39183 6.41954 6.69525 6.86607 7.35763 8.87584 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.062178 B = 0.001978 C = 0.001922 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 450.213921 B =14149.836065 C =14566.949207 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C 0.001 3.999 3 Si 0.975 3.025 4 H -0.266 1.266 5 H -0.282 1.282 6 H -0.269 1.269 7 C -0.540 4.540 8 H 0.065 0.935 9 C 0.207 3.793 10 N -0.692 5.692 11 C 0.065 3.935 12 C -0.102 4.102 13 C 0.066 3.934 14 O -0.329 6.329 15 C 0.119 3.881 16 C -0.203 4.203 17 C -0.064 4.064 18 C -0.106 4.106 19 C -0.100 4.100 20 C -0.135 4.135 21 C -0.106 4.106 22 C -0.132 4.132 23 C -0.032 4.032 24 C -0.175 4.175 25 H 0.266 0.734 26 H -0.036 1.036 27 H 0.002 0.998 28 H 0.337 0.663 29 H 0.026 0.974 30 H 0.064 0.936 31 H 0.074 0.926 32 H 0.073 0.927 33 H 0.073 0.927 34 H 0.073 0.927 35 H 0.143 0.857 36 H 0.158 0.842 37 H 0.149 0.851 38 H 0.148 0.852 39 H 0.147 0.853 40 H 0.138 0.862 41 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.329 -30.911 -0.931 31.012 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.198 4.198 3 Si 0.799 3.201 4 H -0.191 1.191 5 H -0.207 1.207 6 H -0.194 1.194 7 C -0.578 4.578 8 H 0.083 0.917 9 C 0.079 3.921 10 N -0.323 5.323 11 C -0.065 4.065 12 C -0.140 4.140 13 C -0.010 4.010 14 O -0.244 6.244 15 C 0.073 3.927 16 C -0.221 4.221 17 C -0.082 4.082 18 C -0.106 4.106 19 C -0.118 4.118 20 C -0.153 4.153 21 C -0.124 4.124 22 C -0.150 4.150 23 C -0.032 4.032 24 C -0.194 4.194 25 H 0.074 0.926 26 H -0.018 1.018 27 H 0.020 0.980 28 H 0.154 0.846 29 H 0.044 0.956 30 H 0.083 0.917 31 H 0.093 0.907 32 H 0.091 0.909 33 H 0.091 0.909 34 H 0.091 0.909 35 H 0.161 0.839 36 H 0.175 0.825 37 H 0.166 0.834 38 H 0.166 0.834 39 H 0.165 0.835 40 H 0.156 0.844 41 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 2.448 -30.706 -0.243 30.804 hybrid contribution -0.368 1.229 -0.857 1.543 sum 2.081 -29.477 -1.100 29.570 Atomic orbital electron populations 1.70080 1.07783 1.28133 1.51326 1.25976 0.95841 1.03453 0.94505 0.85357 0.78087 0.77510 0.79165 1.19072 1.20716 1.19355 1.21539 0.93891 0.91470 1.50913 0.91685 1.19222 0.90644 0.88796 0.93419 1.60491 1.20680 1.01571 1.49537 1.21772 0.95577 0.88973 1.00189 1.21320 0.98290 0.90502 1.03860 1.22787 0.91070 0.84663 1.02453 1.86045 1.37032 1.12676 1.88610 1.18931 0.92855 0.84300 0.96568 1.21321 0.93848 0.99797 1.07114 1.21240 1.00814 0.90744 0.95378 1.18400 0.92703 0.95112 1.04368 1.21321 1.01228 0.90773 0.98483 1.21205 0.93371 1.00215 1.00493 1.21240 0.96128 0.97370 0.97676 1.21220 1.00028 0.92023 1.01746 1.18040 0.93390 0.93030 0.98749 1.20323 0.99932 0.90039 1.09098 0.92553 1.01847 0.98008 0.84590 0.95585 0.91724 0.90747 0.90869 0.90865 0.90861 0.83903 0.82459 0.83378 0.83424 0.83495 0.84367 0.84686 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.50 13.29 21.45 0.28 -56.22 16 2 C 0.00 0.03 5.46 84.66 0.46 0.50 16 3 Si 0.97 44.39 29.54 68.60 2.03 46.41 16 4 H -0.27 -11.57 7.11 99.48 0.71 -10.87 16 5 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16 6 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 7 C -0.54 -31.09 9.32 25.60 0.24 -30.85 16 8 H 0.06 3.62 7.81 -2.91 -0.02 3.60 16 9 C 0.21 11.18 5.44 85.56 0.47 11.64 16 10 N -0.69 -29.90 6.49 -517.94 -3.36 -33.26 16 11 C 0.06 2.20 5.69 86.30 0.49 2.69 16 12 C -0.10 -2.81 5.84 30.59 0.18 -2.63 16 13 C 0.07 1.55 4.73 71.98 0.34 1.89 16 14 O -0.33 -8.75 10.11 -92.16 -0.93 -9.69 16 15 C 0.12 2.92 6.63 22.27 0.15 3.07 16 16 C -0.20 -4.20 8.93 22.14 0.20 -4.00 16 17 C -0.06 -1.14 9.76 22.32 0.22 -0.92 16 18 C -0.11 -2.03 5.74 -21.28 -0.12 -2.16 16 19 C -0.10 -1.43 9.77 22.33 0.22 -1.21 16 20 C -0.14 -1.65 9.95 22.05 0.22 -1.43 16 21 C -0.11 -1.39 9.95 22.05 0.22 -1.17 16 22 C -0.13 -2.22 9.77 22.34 0.22 -2.00 16 23 C -0.03 -0.68 5.74 -21.30 -0.12 -0.80 16 24 C -0.18 -4.10 9.68 22.42 0.22 -3.88 16 25 H 0.27 15.09 8.31 -92.70 -0.77 14.32 16 26 H -0.04 -2.08 8.14 -2.39 -0.02 -2.10 16 27 H 0.00 0.11 8.14 -2.39 -0.02 0.09 16 28 H 0.34 13.72 8.72 -89.69 -0.78 12.94 16 29 H 0.03 0.87 8.14 -2.39 -0.02 0.85 16 30 H 0.06 2.22 8.14 -2.39 -0.02 2.20 16 31 H 0.07 2.17 8.14 -2.39 -0.02 2.15 16 32 H 0.07 1.98 8.14 -2.39 -0.02 1.96 16 33 H 0.07 1.55 7.62 -2.39 -0.02 1.53 16 34 H 0.07 1.58 7.64 -2.39 -0.02 1.57 16 35 H 0.14 2.52 6.21 -2.91 -0.02 2.50 16 36 H 0.16 1.82 8.06 -2.91 -0.02 1.79 16 37 H 0.15 1.31 8.06 -2.91 -0.02 1.29 16 38 H 0.15 0.96 8.06 -2.91 -0.02 0.94 16 39 H 0.15 1.09 8.06 -2.91 -0.02 1.07 16 40 H 0.14 1.84 8.06 -2.91 -0.02 1.81 16 41 H 0.14 2.91 8.06 -2.91 -0.02 2.89 16 Total: -1.00 -68.23 346.67 1.84 -66.39 By element: Atomic # 1 Polarization: 17.39 SS G_CDS: 0.23 Total: 17.62 kcal Atomic # 6 Polarization: -34.84 SS G_CDS: 3.59 Total: -31.26 kcal Atomic # 7 Polarization: -86.40 SS G_CDS: -3.08 Total: -89.48 kcal Atomic # 8 Polarization: -8.75 SS G_CDS: -0.93 Total: -9.69 kcal Atomic # 14 Polarization: 44.39 SS G_CDS: 2.03 Total: 46.41 kcal Total: -68.23 1.84 -66.39 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000572714627.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.437 kcal (2) G-P(sol) polarization free energy of solvation -68.231 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.794 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.838 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.393 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.956 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds