Wall clock time and date at job start Tue Mar 31 2020 06:00:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08996 * 109.47853 * 2 1 4 4 C 1.50706 * 109.47238 * 120.00151 * 2 1 3 5 5 H 1.07999 * 120.00196 * 119.99595 * 4 2 1 6 6 C 1.37879 * 119.99394 * 299.99727 * 4 2 1 7 7 N 1.31514 * 120.00338 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 119.99424 * 180.02562 * 6 4 2 9 9 H 1.48501 * 109.47363 * 359.97438 * 8 6 4 10 10 H 1.48500 * 109.47233 * 120.00158 * 8 6 4 11 11 H 1.48508 * 109.46883 * 239.99963 * 8 6 4 12 12 N 1.46902 * 109.47094 * 239.99537 * 2 1 3 13 13 C 1.46904 * 110.99963 * 183.95369 * 12 2 1 14 14 C 1.46905 * 110.99800 * 60.00278 * 12 2 1 15 15 C 1.50700 * 109.47326 * 189.99540 * 14 12 2 16 16 C 1.40014 * 120.31164 * 89.99990 * 15 14 12 17 17 N 1.31463 * 120.13944 * 179.97438 * 16 15 14 18 18 C 1.33416 * 120.84909 * 359.97438 * 17 16 15 19 19 C 1.40742 * 132.50440 * 179.97438 * 18 17 16 20 20 C 1.43199 * 126.52398 * 0.02562 * 19 18 17 21 21 N 9.63143 * 91.49056 * 238.72090 * 2 1 3 22 22 C 1.40568 * 106.95620 * 180.02562 * 19 18 17 23 23 N 1.30788 * 108.75018 * 359.97438 * 22 19 18 24 24 N 1.36720 * 120.77156 * 0.02562 * 18 17 16 25 25 C 1.35712 * 120.31767 * 269.72436 * 15 14 12 26 26 H 1.09002 * 109.47153 * 59.99972 * 1 2 3 27 27 H 1.09001 * 109.46832 * 300.00163 * 1 2 3 28 28 H 1.09004 * 109.47261 * 180.02562 * 1 2 3 29 29 H 0.96996 * 119.99730 * 179.97438 * 7 6 4 30 30 H 1.08998 * 109.46991 * 60.00787 * 13 12 2 31 31 H 1.08998 * 109.46942 * 180.02562 * 13 12 2 32 32 H 1.08998 * 109.47155 * 300.00314 * 13 12 2 33 33 H 1.08997 * 109.47089 * 310.00066 * 14 12 2 34 34 H 1.09006 * 109.47115 * 69.99884 * 14 12 2 35 35 H 1.08013 * 119.93059 * 359.97438 * 16 15 14 36 36 H 1.07993 * 125.62578 * 179.97438 * 22 19 18 37 37 H 1.07995 * 120.42513 * 359.97438 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7105 1.2305 5 1 2.6532 -1.5886 1.1314 6 6 1.6993 -0.2393 2.4827 7 7 0.9428 0.8297 2.6034 8 14 2.3225 -1.1195 4.0079 9 1 3.1474 -2.2863 3.6038 10 1 3.1473 -0.1857 4.8160 11 1 1.1678 -1.5865 4.8165 12 7 2.0196 -0.6926 -1.1994 13 6 3.4851 -0.7946 -1.1870 14 6 1.5486 -0.0265 -2.4211 15 6 1.8580 -0.8912 -3.6159 16 6 0.9303 -1.8414 -4.0597 17 7 1.2035 -2.5936 -5.1027 18 6 2.3611 -2.4664 -5.7536 19 6 2.8997 -3.1266 -6.8738 20 6 2.2750 -4.1697 -7.6302 21 7 1.7805 -4.9990 -8.2287 22 6 4.1678 -2.5673 -7.1088 23 7 4.3918 -1.6420 -6.2120 24 7 3.2927 -1.5501 -5.3513 25 6 3.0359 -0.7524 -4.2754 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 0.5139 0.8900 28 1 -0.3634 -1.0277 0.0005 29 1 0.7082 1.1609 3.4844 30 1 3.8029 -1.3533 -0.3067 31 1 3.8209 -1.3110 -2.0862 32 1 3.9187 0.2050 -1.1591 33 1 0.4722 0.1323 -2.3564 34 1 2.0519 0.9345 -2.5281 35 1 -0.0117 -1.9567 -3.5440 36 1 4.8452 -2.8542 -7.8994 37 1 3.7617 -0.0216 -3.9508 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000576637524.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:00:42 Heat of formation + Delta-G solvation = 160.023186 kcal Electronic energy + Delta-G solvation = -21395.096826 eV Core-core repulsion = 18175.399929 eV Total energy + Delta-G solvation = -3219.696897 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 285.128 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -42.70996 -38.93175 -37.08590 -36.38844 -34.35509 -33.15439 -31.66128 -30.04323 -29.19843 -27.30724 -25.21213 -24.81490 -24.04258 -23.02656 -21.89191 -19.66591 -19.29393 -17.91287 -17.33499 -16.48274 -16.45715 -15.64187 -15.25765 -14.50407 -14.25460 -14.20806 -14.07795 -13.50901 -13.42580 -13.27489 -12.78124 -12.69097 -12.59673 -12.37137 -12.09206 -11.53210 -11.39780 -11.36603 -11.10398 -10.83344 -10.76968 -10.33149 -10.29867 -10.10303 -10.01726 -9.70634 -9.04696 -8.56887 -8.19970 -7.49645 -6.15425 -4.20579 0.15477 0.56885 1.62859 1.86638 2.68023 2.95225 3.21355 3.30391 3.33870 3.51648 3.58739 3.67897 4.18975 4.28804 4.32470 4.54546 4.63988 4.84393 5.00409 5.11458 5.17849 5.25370 5.64883 5.74911 5.81805 5.86067 5.89873 6.10037 6.13046 6.53419 6.63429 6.84743 6.92086 7.01274 7.28041 7.30628 7.46915 7.64144 7.67684 7.94237 8.12009 8.35626 8.85189 9.45574 10.91241 Molecular weight = 285.13amu Principal moments of inertia in cm(-1) A = 0.030627 B = 0.003393 C = 0.003358 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 914.000592 B = 8251.147721 C = 8336.412008 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.214 3.786 3 H 0.003 0.997 4 C -0.507 4.507 5 H 0.065 0.935 6 C 0.061 3.939 7 N -0.892 5.892 8 Si 0.896 3.104 9 H -0.273 1.273 10 H -0.285 1.285 11 H -0.283 1.283 12 N -0.533 5.533 13 C 0.032 3.968 14 C 0.095 3.905 15 C -0.152 4.152 16 C 0.225 3.775 17 N -0.474 5.474 18 C 0.320 3.680 19 C -0.206 4.206 20 C 0.307 3.693 21 N -0.441 5.441 22 C 0.147 3.853 23 N -0.310 5.310 24 N -0.297 5.297 25 C 0.166 3.834 26 H 0.010 0.990 27 H 0.087 0.913 28 H 0.037 0.963 29 H 0.261 0.739 30 H 0.081 0.919 31 H 0.037 0.963 32 H 0.017 0.983 33 H 0.101 0.899 34 H 0.044 0.956 35 H 0.190 0.810 36 H 0.208 0.792 37 H 0.184 0.816 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.842 0.023 -13.296 13.840 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.108 3.892 3 H 0.020 0.980 4 C -0.546 4.546 5 H 0.083 0.917 6 C -0.141 4.141 7 N -0.530 5.530 8 Si 0.724 3.276 9 H -0.197 1.197 10 H -0.211 1.211 11 H -0.209 1.209 12 N -0.258 5.258 13 C -0.117 4.117 14 C -0.035 4.035 15 C -0.159 4.159 16 C 0.045 3.955 17 N -0.185 5.185 18 C 0.084 3.916 19 C -0.224 4.224 20 C -0.008 4.008 21 N -0.119 5.119 22 C -0.036 4.036 23 N -0.131 5.131 24 N -0.064 5.064 25 C 0.030 3.970 26 H 0.029 0.971 27 H 0.106 0.894 28 H 0.056 0.944 29 H 0.071 0.929 30 H 0.100 0.900 31 H 0.056 0.944 32 H 0.036 0.964 33 H 0.119 0.881 34 H 0.062 0.938 35 H 0.207 0.793 36 H 0.225 0.775 37 H 0.201 0.799 Dipole moment (debyes) X Y Z Total from point charges 3.264 -1.421 -14.146 14.588 hybrid contribution 0.867 0.761 1.266 1.713 sum 4.132 -0.660 -12.880 13.543 Atomic orbital electron populations 1.21905 0.97466 0.99946 1.00161 1.19303 0.92473 0.92106 0.85276 0.97973 1.21149 1.31375 1.12466 0.89581 0.91737 1.24914 0.95066 0.95013 0.99081 1.69879 1.36674 1.22936 1.23558 0.86466 0.78678 0.79617 0.82813 1.19729 1.21102 1.20936 1.62244 1.09588 1.52469 1.01449 1.22311 0.88584 0.99430 1.01354 1.21031 1.02865 0.92602 0.86956 1.20822 0.93596 1.01559 0.99886 1.23672 0.98886 0.85380 0.87601 1.68291 1.15081 1.25605 1.09516 1.20402 0.86393 0.90129 0.94698 1.14999 0.98203 1.06864 1.02320 1.24060 0.92896 0.91462 0.92344 1.81235 1.08145 1.11692 1.10807 1.24000 0.93480 0.90284 0.95884 1.77695 1.04885 1.24786 1.05710 1.46872 1.14064 1.24772 1.20656 1.22152 0.97701 0.93340 0.83777 0.97124 0.89404 0.94367 0.92881 0.89998 0.94380 0.96413 0.88071 0.93806 0.79275 0.77534 0.79886 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.85 8.76 37.16 0.33 -2.53 16 2 C 0.21 4.65 2.06 -68.86 -0.14 4.50 16 3 H 0.00 0.06 8.14 -51.93 -0.42 -0.36 16 4 C -0.51 -12.56 7.93 -34.44 -0.27 -12.84 16 5 H 0.06 1.61 6.39 -52.49 -0.34 1.28 16 6 C 0.06 1.56 5.30 -17.82 -0.09 1.46 16 7 N -0.89 -23.56 11.32 55.43 0.63 -22.93 16 8 Si 0.90 20.06 29.54 -169.99 -5.02 15.04 16 9 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 10 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 11 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 12 N -0.53 -9.28 4.61 -237.72 -1.10 -10.37 16 13 C 0.03 0.52 8.91 60.07 0.54 1.05 16 14 C 0.09 1.24 4.95 -4.97 -0.02 1.22 16 15 C -0.15 -1.72 4.87 -104.86 -0.51 -2.24 16 16 C 0.23 2.56 10.97 -17.04 -0.19 2.37 16 17 N -0.47 -6.31 10.47 -11.97 -0.13 -6.44 16 18 C 0.32 4.21 7.88 -155.71 -1.23 2.99 16 19 C -0.21 -2.49 6.03 -106.15 -0.64 -3.13 16 20 C 0.31 4.15 15.84 -22.47 -0.36 3.79 16 21 N -0.44 -6.75 18.54 41.84 0.78 -5.97 16 22 C 0.15 1.40 11.93 -17.12 -0.20 1.20 16 23 N -0.31 -3.55 12.58 30.76 0.39 -3.17 16 24 N -0.30 -3.62 3.87 -11.95 -0.05 -3.66 16 25 C 0.17 1.81 9.16 -16.44 -0.15 1.66 16 26 H 0.01 0.18 6.20 -51.93 -0.32 -0.15 16 27 H 0.09 2.09 6.07 -51.93 -0.32 1.78 16 28 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 29 H 0.26 6.63 8.31 -40.82 -0.34 6.29 16 30 H 0.08 1.51 6.23 -51.93 -0.32 1.19 16 31 H 0.04 0.53 5.92 -51.93 -0.31 0.22 16 32 H 0.02 0.28 8.14 -51.93 -0.42 -0.14 16 33 H 0.10 1.27 5.78 -51.93 -0.30 0.97 16 34 H 0.04 0.54 8.06 -51.93 -0.42 0.12 16 35 H 0.19 1.72 8.06 -52.48 -0.42 1.30 16 36 H 0.21 1.05 8.06 -52.49 -0.42 0.63 16 37 H 0.18 1.62 8.00 -52.49 -0.42 1.20 16 LS Contribution 318.36 15.07 4.80 4.80 Total: -1.00 -29.48 318.36 -6.64 -36.12 By element: Atomic # 1 Polarization: 1.08 SS G_CDS: -3.99 Total: -2.92 kcal Atomic # 6 Polarization: 2.45 SS G_CDS: -2.95 Total: -0.50 kcal Atomic # 7 Polarization: -53.07 SS G_CDS: 0.52 Total: -52.55 kcal Atomic # 14 Polarization: 20.06 SS G_CDS: -5.02 Total: 15.04 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -29.48 -6.64 -36.12 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000576637524.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 196.146 kcal (2) G-P(sol) polarization free energy of solvation -29.481 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 166.665 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.642 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.123 kcal (6) G-S(sol) free energy of system = (1) + (5) 160.023 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds