Wall clock time and date at job start Tue Mar 31 2020 06:00:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08996 * 109.47853 * 2 1 4 4 C 1.50706 * 109.47238 * 120.00151 * 2 1 3 5 5 H 1.07999 * 120.00196 * 119.99595 * 4 2 1 6 6 C 1.37879 * 119.99394 * 299.99727 * 4 2 1 7 7 N 1.31514 * 120.00338 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 119.99424 * 180.02562 * 6 4 2 9 9 H 1.48501 * 109.47363 * 359.97438 * 8 6 4 10 10 H 1.48500 * 109.47233 * 120.00158 * 8 6 4 11 11 H 1.48508 * 109.46883 * 239.99963 * 8 6 4 12 12 N 1.46902 * 109.47094 * 239.99537 * 2 1 3 13 13 C 1.46904 * 110.99963 * 183.95369 * 12 2 1 14 14 C 1.46905 * 110.99800 * 60.00278 * 12 2 1 15 15 C 1.50700 * 109.47326 * 189.99540 * 14 12 2 16 16 C 1.40014 * 120.31164 * 89.99990 * 15 14 12 17 17 N 1.31463 * 120.13944 * 179.97438 * 16 15 14 18 18 C 1.33416 * 120.84909 * 359.97438 * 17 16 15 19 19 C 1.40742 * 132.50440 * 179.97438 * 18 17 16 20 20 C 1.43199 * 126.52398 * 0.02562 * 19 18 17 21 21 N 9.63143 * 91.49056 * 238.72090 * 2 1 3 22 22 C 1.40568 * 106.95620 * 180.02562 * 19 18 17 23 23 N 1.30788 * 108.75018 * 359.97438 * 22 19 18 24 24 N 1.36720 * 120.77156 * 0.02562 * 18 17 16 25 25 C 1.35712 * 120.31767 * 269.72436 * 15 14 12 26 26 H 1.09002 * 109.47153 * 59.99972 * 1 2 3 27 27 H 1.09001 * 109.46832 * 300.00163 * 1 2 3 28 28 H 1.09004 * 109.47261 * 180.02562 * 1 2 3 29 29 H 0.96996 * 119.99730 * 179.97438 * 7 6 4 30 30 H 1.08998 * 109.46991 * 60.00787 * 13 12 2 31 31 H 1.08998 * 109.46942 * 180.02562 * 13 12 2 32 32 H 1.08998 * 109.47155 * 300.00314 * 13 12 2 33 33 H 1.08997 * 109.47089 * 310.00066 * 14 12 2 34 34 H 1.09006 * 109.47115 * 69.99884 * 14 12 2 35 35 H 1.08013 * 119.93059 * 359.97438 * 16 15 14 36 36 H 1.07993 * 125.62578 * 179.97438 * 22 19 18 37 37 H 1.07995 * 120.42513 * 359.97438 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7105 1.2305 5 1 2.6532 -1.5886 1.1314 6 6 1.6993 -0.2393 2.4827 7 7 0.9428 0.8297 2.6034 8 14 2.3225 -1.1195 4.0079 9 1 3.1474 -2.2863 3.6038 10 1 3.1473 -0.1857 4.8160 11 1 1.1678 -1.5865 4.8165 12 7 2.0196 -0.6926 -1.1994 13 6 3.4851 -0.7946 -1.1870 14 6 1.5486 -0.0265 -2.4211 15 6 1.8580 -0.8912 -3.6159 16 6 0.9303 -1.8414 -4.0597 17 7 1.2035 -2.5936 -5.1027 18 6 2.3611 -2.4664 -5.7536 19 6 2.8997 -3.1266 -6.8738 20 6 2.2750 -4.1697 -7.6302 21 7 1.7805 -4.9990 -8.2287 22 6 4.1678 -2.5673 -7.1088 23 7 4.3918 -1.6420 -6.2120 24 7 3.2927 -1.5501 -5.3513 25 6 3.0359 -0.7524 -4.2754 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 0.5139 0.8900 28 1 -0.3634 -1.0277 0.0005 29 1 0.7082 1.1609 3.4844 30 1 3.8029 -1.3533 -0.3067 31 1 3.8209 -1.3110 -2.0862 32 1 3.9187 0.2050 -1.1591 33 1 0.4722 0.1323 -2.3564 34 1 2.0519 0.9345 -2.5281 35 1 -0.0117 -1.9567 -3.5440 36 1 4.8452 -2.8542 -7.8994 37 1 3.7617 -0.0216 -3.9508 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000576637524.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:00:42 Heat of formation + Delta-G solvation = 141.921585 kcal Electronic energy + Delta-G solvation = -21395.881770 eV Core-core repulsion = 18175.399929 eV Total energy + Delta-G solvation = -3220.481841 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 285.128 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -43.59771 -39.92509 -38.38388 -37.45726 -35.46666 -34.66020 -32.84325 -31.13514 -30.62957 -28.55035 -26.72560 -25.86808 -25.29125 -24.06520 -22.95692 -21.17701 -20.22406 -18.83293 -18.46296 -18.04215 -17.43063 -17.01105 -16.37658 -15.82718 -15.68354 -15.43392 -15.00765 -14.61868 -14.51404 -14.34028 -14.17413 -13.81937 -13.73036 -13.58983 -13.43050 -12.95106 -12.79715 -12.62505 -12.49679 -12.39597 -12.13791 -11.98898 -11.90568 -11.70048 -11.03059 -10.82177 -10.63369 -10.43568 -9.15440 -8.89838 -8.08086 -6.17873 -0.71942 -0.34640 0.75992 1.03062 1.42407 1.47010 1.55773 1.65641 2.01793 2.45173 2.59548 2.66747 2.79791 3.21669 3.32857 3.38605 3.48215 3.68605 3.84801 4.09566 4.30454 4.36577 4.51770 4.63926 4.75598 4.82627 4.91798 5.01745 5.06697 5.11507 5.16339 5.29458 5.34460 5.59392 5.77166 5.87556 6.16860 6.34958 6.37897 6.40649 6.61924 6.73732 6.96853 7.51423 8.97111 Molecular weight = 285.13amu Principal moments of inertia in cm(-1) A = 0.030627 B = 0.003393 C = 0.003358 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 914.000592 B = 8251.147721 C = 8336.412008 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.219 3.781 3 H -0.025 1.025 4 C -0.516 4.516 5 H 0.057 0.943 6 C 0.016 3.984 7 N -0.917 5.917 8 Si 0.949 3.051 9 H -0.270 1.270 10 H -0.284 1.284 11 H -0.284 1.284 12 N -0.541 5.541 13 C 0.036 3.964 14 C 0.100 3.900 15 C -0.154 4.154 16 C 0.229 3.771 17 N -0.500 5.500 18 C 0.307 3.693 19 C -0.222 4.222 20 C 0.325 3.675 21 N -0.480 5.480 22 C 0.170 3.830 23 N -0.322 5.322 24 N -0.304 5.304 25 C 0.176 3.824 26 H 0.044 0.956 27 H 0.056 0.944 28 H 0.034 0.966 29 H 0.260 0.740 30 H 0.055 0.945 31 H 0.064 0.936 32 H 0.021 0.979 33 H 0.108 0.892 34 H 0.057 0.943 35 H 0.209 0.791 36 H 0.251 0.749 37 H 0.206 0.794 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.787 0.062 -14.403 15.178 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.113 3.887 3 H -0.008 1.008 4 C -0.555 4.555 5 H 0.075 0.925 6 C -0.183 4.183 7 N -0.557 5.557 8 Si 0.776 3.224 9 H -0.195 1.195 10 H -0.210 1.210 11 H -0.210 1.210 12 N -0.265 5.265 13 C -0.112 4.112 14 C -0.028 4.028 15 C -0.161 4.161 16 C 0.050 3.950 17 N -0.212 5.212 18 C 0.071 3.929 19 C -0.240 4.240 20 C 0.011 3.989 21 N -0.159 5.159 22 C -0.014 4.014 23 N -0.142 5.142 24 N -0.070 5.070 25 C 0.040 3.960 26 H 0.063 0.937 27 H 0.074 0.926 28 H 0.053 0.947 29 H 0.069 0.931 30 H 0.074 0.926 31 H 0.083 0.917 32 H 0.039 0.961 33 H 0.126 0.874 34 H 0.075 0.925 35 H 0.225 0.775 36 H 0.267 0.733 37 H 0.222 0.778 Dipole moment (debyes) X Y Z Total from point charges 4.215 -1.383 -15.261 15.893 hybrid contribution 0.619 0.771 1.542 1.832 sum 4.834 -0.612 -13.719 14.559 Atomic orbital electron populations 1.21722 0.96836 0.99655 1.00305 1.19038 0.92902 0.90464 0.86333 1.00782 1.21483 1.30780 1.12138 0.91061 0.92473 1.25561 0.95519 0.95719 1.01509 1.69993 1.37774 1.24069 1.23833 0.85643 0.78051 0.78669 0.80047 1.19478 1.21032 1.20997 1.62081 1.10207 1.52591 1.01637 1.22243 0.88060 0.99516 1.01394 1.20989 1.03278 0.93104 0.85465 1.20536 0.94130 1.01771 0.99620 1.23993 0.99501 0.84581 0.86921 1.68329 1.15636 1.26723 1.10508 1.20632 0.86687 0.90560 0.95058 1.15164 0.99333 1.07065 1.02467 1.24220 0.92033 0.91044 0.91586 1.81247 1.09337 1.13038 1.12230 1.24676 0.92708 0.88375 0.95639 1.77709 1.04811 1.25600 1.06123 1.46992 1.14115 1.24794 1.21051 1.22487 0.97745 0.92839 0.82938 0.93709 0.92560 0.94713 0.93071 0.92641 0.91740 0.96082 0.87408 0.92514 0.77478 0.73349 0.77755 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.22 8.76 71.98 0.63 -4.59 16 2 C 0.22 9.46 2.06 44.17 0.09 9.55 16 3 H -0.03 -1.22 8.14 -2.39 -0.02 -1.24 16 4 C -0.52 -25.68 7.93 25.60 0.20 -25.47 16 5 H 0.06 2.87 6.39 -2.91 -0.02 2.85 16 6 C 0.02 0.81 5.30 84.66 0.45 1.26 16 7 N -0.92 -49.07 11.32 21.45 0.24 -48.82 16 8 Si 0.95 41.36 29.54 68.60 2.03 43.39 16 9 H -0.27 -11.55 7.11 99.48 0.71 -10.84 16 10 H -0.28 -12.27 7.11 99.48 0.71 -11.56 16 11 H -0.28 -12.31 7.11 99.48 0.71 -11.61 16 12 N -0.54 -18.05 4.61 -906.01 -4.18 -22.23 16 13 C 0.04 1.13 8.91 127.69 1.14 2.27 16 14 C 0.10 2.38 4.95 85.56 0.42 2.81 16 15 C -0.15 -3.11 4.87 -20.02 -0.10 -3.21 16 16 C 0.23 4.77 10.97 85.18 0.93 5.70 16 17 N -0.50 -12.59 10.47 -191.78 -2.01 -14.60 16 18 C 0.31 7.54 7.88 133.92 1.06 8.59 16 19 C -0.22 -4.96 6.03 -20.85 -0.13 -5.08 16 20 C 0.32 8.42 15.84 88.33 1.40 9.82 16 21 N -0.48 -14.44 18.54 19.00 0.35 -14.08 16 22 C 0.17 2.72 11.93 85.42 1.02 3.73 16 23 N -0.32 -6.45 12.58 -56.59 -0.71 -7.16 16 24 N -0.30 -6.63 3.87 -191.71 -0.74 -7.37 16 25 C 0.18 3.33 9.16 83.40 0.76 4.10 16 26 H 0.04 1.49 6.20 -2.39 -0.01 1.47 16 27 H 0.06 2.69 6.07 -2.39 -0.01 2.68 16 28 H 0.03 1.41 8.14 -2.38 -0.02 1.39 16 29 H 0.26 13.38 8.31 -92.71 -0.77 12.60 16 30 H 0.05 2.02 6.23 -2.39 -0.01 2.00 16 31 H 0.06 1.64 5.92 -2.39 -0.01 1.63 16 32 H 0.02 0.63 8.14 -2.39 -0.02 0.61 16 33 H 0.11 2.42 5.78 -2.39 -0.01 2.41 16 34 H 0.06 1.24 8.06 -2.38 -0.02 1.22 16 35 H 0.21 3.33 8.06 -2.90 -0.02 3.31 16 36 H 0.25 1.49 8.06 -2.91 -0.02 1.47 16 37 H 0.21 2.90 8.00 -2.91 -0.02 2.88 16 Total: -1.00 -64.11 318.36 3.98 -60.13 By element: Atomic # 1 Polarization: 0.17 SS G_CDS: 1.11 Total: 1.28 kcal Atomic # 6 Polarization: 1.58 SS G_CDS: 7.88 Total: 9.46 kcal Atomic # 7 Polarization: -107.22 SS G_CDS: -7.05 Total: -114.27 kcal Atomic # 14 Polarization: 41.36 SS G_CDS: 2.03 Total: 43.39 kcal Total: -64.11 3.98 -60.13 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000576637524.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 202.056 kcal (2) G-P(sol) polarization free energy of solvation -64.110 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 137.946 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.975 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.134 kcal (6) G-S(sol) free energy of system = (1) + (5) 141.922 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds