Wall clock time and date at job start Tue Mar 31 2020 06:00:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09007 * 109.46721 * 2 1 4 4 C 1.50694 * 109.47355 * 239.99710 * 2 1 3 5 5 H 1.08000 * 120.00563 * 239.99848 * 4 2 1 6 6 C 1.37885 * 119.99902 * 60.00012 * 4 2 1 7 7 N 1.31516 * 119.99913 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99766 * 179.97438 * 6 4 2 9 9 H 1.48506 * 109.46985 * 179.97438 * 8 6 4 10 10 H 1.48494 * 109.47276 * 299.99832 * 8 6 4 11 11 H 1.48498 * 109.47150 * 60.00043 * 8 6 4 12 12 N 1.46903 * 109.47096 * 119.99653 * 2 1 3 13 13 C 1.46895 * 110.99749 * 58.95710 * 12 2 1 14 14 C 1.46901 * 110.99984 * 295.00215 * 12 2 1 15 15 C 1.50700 * 109.47017 * 190.00287 * 14 12 2 16 16 C 1.40015 * 120.30960 * 269.72246 * 15 14 12 17 17 N 1.31467 * 120.13189 * 179.72508 * 16 15 14 18 18 C 1.33418 * 120.85339 * 0.58685 * 17 16 15 19 19 C 1.40741 * 132.50290 * 179.70457 * 18 17 16 20 20 C 1.43192 * 126.52124 * 359.94605 * 19 18 17 21 21 N 9.70464 * 105.38167 * 114.34663 * 2 1 3 22 22 C 1.40562 * 106.95159 * 179.97438 * 19 18 17 23 23 N 1.30780 * 108.75687 * 0.02562 * 22 19 18 24 24 N 1.36723 * 120.77072 * 359.66957 * 18 17 16 25 25 C 1.35709 * 120.31852 * 90.00087 * 15 14 12 26 26 H 1.08995 * 109.47131 * 60.00355 * 1 2 3 27 27 H 1.09002 * 109.47106 * 180.02562 * 1 2 3 28 28 H 1.08998 * 109.47089 * 300.00187 * 1 2 3 29 29 H 0.97001 * 119.99646 * 179.97438 * 7 6 4 30 30 H 1.08998 * 109.47176 * 60.00348 * 13 12 2 31 31 H 1.09001 * 109.46775 * 180.02562 * 13 12 2 32 32 H 1.09003 * 109.47375 * 299.99556 * 13 12 2 33 33 H 1.09007 * 109.47082 * 310.00168 * 14 12 2 34 34 H 1.09000 * 109.47389 * 69.99835 * 14 12 2 35 35 H 1.08003 * 119.93819 * 359.97438 * 16 15 14 36 36 H 1.08009 * 125.62276 * 179.97438 * 22 19 18 37 37 H 1.08002 * 120.42167 * 359.95602 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1313 6 6 1.6993 -0.2394 -2.4827 7 7 0.9427 0.8296 -2.6034 8 14 2.3226 -1.1197 -4.0078 9 1 1.8270 -0.4201 -5.2204 10 1 3.8076 -1.1190 -4.0076 11 1 1.8282 -2.5199 -4.0080 12 7 2.0197 -0.6924 1.1995 13 6 1.5284 -2.0760 1.2460 14 6 1.6487 0.0393 2.4181 15 6 2.3679 -0.5569 3.6006 16 6 1.7808 -1.5942 4.3353 17 7 2.4137 -2.1154 5.3629 18 6 3.6134 -1.6613 5.7297 19 6 4.4906 -2.0242 6.7687 20 6 4.2750 -3.0464 7.7480 21 7 4.1041 -3.8575 8.5249 22 6 5.6183 -1.1918 6.6626 23 7 5.4513 -0.3850 5.6469 24 7 4.2176 -0.6463 5.0411 25 6 3.5883 -0.0897 3.9669 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5139 0.8899 29 1 0.7088 1.1611 -3.4845 30 1 1.8764 -2.6150 0.3648 31 1 1.9053 -2.5654 2.1441 32 1 0.4385 -2.0742 1.2640 33 1 1.9297 1.0872 2.3124 34 1 0.5722 -0.0344 2.5726 35 1 0.8077 -1.9697 4.0547 36 1 6.4802 -1.2141 7.3131 37 1 4.0552 0.7123 3.4146 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000576637525.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:00:45 Heat of formation + Delta-G solvation = 159.176278 kcal Electronic energy + Delta-G solvation = -21394.555924 eV Core-core repulsion = 18174.822303 eV Total energy + Delta-G solvation = -3219.733621 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 285.128 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -42.70007 -38.97504 -37.18979 -36.39358 -34.35992 -33.17427 -31.67377 -30.05075 -28.66889 -26.99536 -25.45761 -25.21022 -24.23826 -22.98315 -21.94823 -19.47123 -19.28606 -17.92786 -17.31980 -16.48368 -16.32148 -15.64154 -15.26696 -14.53901 -14.35288 -14.15177 -13.78304 -13.59848 -13.44807 -13.27717 -12.87807 -12.74354 -12.62212 -12.40693 -11.79025 -11.49548 -11.43488 -11.27746 -11.15490 -10.88518 -10.84331 -10.68603 -10.19714 -10.16854 -9.95905 -9.70730 -9.05731 -8.51593 -8.19060 -7.45878 -6.14244 -4.18841 0.14951 0.58732 1.65269 1.88073 2.67253 2.93751 3.24814 3.29955 3.32691 3.48710 3.57653 3.69893 4.21963 4.30281 4.33846 4.52411 4.65307 4.89271 4.99357 5.15072 5.19286 5.26662 5.60518 5.78256 5.84293 5.86672 5.92466 6.12243 6.17383 6.47007 6.62972 6.71278 6.90316 7.03167 7.23430 7.27332 7.53143 7.63221 7.65294 7.88332 8.16848 8.36988 8.86101 9.47125 10.92591 Molecular weight = 285.13amu Principal moments of inertia in cm(-1) A = 0.030214 B = 0.003396 C = 0.003351 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 926.497492 B = 8244.203891 C = 8354.263723 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.213 3.787 3 H 0.043 0.957 4 C -0.505 4.505 5 H 0.063 0.937 6 C 0.061 3.939 7 N -0.893 5.893 8 Si 0.897 3.103 9 H -0.288 1.288 10 H -0.276 1.276 11 H -0.278 1.278 12 N -0.531 5.531 13 C 0.029 3.971 14 C 0.099 3.901 15 C -0.159 4.159 16 C 0.211 3.789 17 N -0.474 5.474 18 C 0.318 3.682 19 C -0.206 4.206 20 C 0.307 3.693 21 N -0.442 5.442 22 C 0.146 3.854 23 N -0.306 5.306 24 N -0.297 5.297 25 C 0.185 3.815 26 H 0.090 0.910 27 H 0.032 0.968 28 H 0.009 0.991 29 H 0.262 0.738 30 H 0.078 0.922 31 H 0.038 0.962 32 H 0.025 0.975 33 H 0.088 0.912 34 H 0.054 0.946 35 H 0.184 0.816 36 H 0.208 0.792 37 H 0.191 0.809 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.046 0.266 12.643 13.007 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C 0.107 3.893 3 H 0.060 0.940 4 C -0.544 4.544 5 H 0.081 0.919 6 C -0.141 4.141 7 N -0.532 5.532 8 Si 0.725 3.275 9 H -0.213 1.213 10 H -0.202 1.202 11 H -0.203 1.203 12 N -0.255 5.255 13 C -0.120 4.120 14 C -0.030 4.030 15 C -0.165 4.165 16 C 0.031 3.969 17 N -0.185 5.185 18 C 0.082 3.918 19 C -0.224 4.224 20 C -0.007 4.007 21 N -0.120 5.120 22 C -0.037 4.037 23 N -0.127 5.127 24 N -0.063 5.063 25 C 0.049 3.951 26 H 0.109 0.891 27 H 0.051 0.949 28 H 0.028 0.972 29 H 0.072 0.928 30 H 0.096 0.904 31 H 0.057 0.943 32 H 0.044 0.956 33 H 0.106 0.894 34 H 0.072 0.928 35 H 0.201 0.799 36 H 0.225 0.775 37 H 0.208 0.792 Dipole moment (debyes) X Y Z Total from point charges 3.634 -0.583 13.626 14.114 hybrid contribution -0.594 -0.102 -1.309 1.441 sum 3.039 -0.685 12.317 12.705 Atomic orbital electron populations 1.22437 1.00593 0.99594 1.00804 1.19347 0.89926 0.94592 0.85433 0.93959 1.21037 1.31049 1.12725 0.89550 0.91936 1.24907 0.95070 0.95062 0.99031 1.69856 1.36697 1.22903 1.23743 0.86578 0.79284 0.79632 0.82037 1.21343 1.20186 1.20323 1.62509 1.59537 1.02133 1.01340 1.22332 0.97524 0.90919 1.01195 1.20901 0.96479 0.98328 0.87314 1.20775 0.95119 0.99789 1.00837 1.23659 0.98680 0.88366 0.86225 1.68248 1.05243 1.27966 1.17062 1.20361 0.90345 0.88104 0.92971 1.15005 0.98691 1.06995 1.01664 1.24069 0.93329 0.91560 0.91777 1.81237 1.07917 1.11254 1.11548 1.24013 0.96759 0.89396 0.93552 1.77714 0.96018 1.25996 1.12951 1.46920 1.14687 1.24165 1.20567 1.22144 0.91213 0.97078 0.84698 0.89144 0.94866 0.97221 0.92798 0.90361 0.94303 0.95649 0.89356 0.92816 0.79919 0.77514 0.79244 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.64 8.28 37.16 0.31 -3.33 16 2 C 0.21 4.58 2.34 -68.87 -0.16 4.42 16 3 H 0.04 1.00 8.03 -51.92 -0.42 0.58 16 4 C -0.51 -12.49 7.94 -34.44 -0.27 -12.76 16 5 H 0.06 1.56 6.75 -52.49 -0.35 1.21 16 6 C 0.06 1.55 5.30 -17.82 -0.09 1.46 16 7 N -0.89 -23.57 11.32 55.43 0.63 -22.94 16 8 Si 0.90 20.10 29.54 -169.99 -5.02 15.07 16 9 H -0.29 -6.46 7.11 56.52 0.40 -6.06 16 10 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 11 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 12 N -0.53 -9.16 4.73 -237.73 -1.13 -10.29 16 13 C 0.03 0.46 8.58 60.06 0.52 0.98 16 14 C 0.10 1.28 4.57 -4.98 -0.02 1.26 16 15 C -0.16 -1.78 4.84 -104.86 -0.51 -2.29 16 16 C 0.21 2.32 9.21 -17.04 -0.16 2.17 16 17 N -0.47 -6.19 10.47 -11.97 -0.13 -6.32 16 18 C 0.32 4.17 7.88 -155.71 -1.23 2.95 16 19 C -0.21 -2.49 6.03 -106.15 -0.64 -3.13 16 20 C 0.31 4.12 15.84 -22.48 -0.36 3.77 16 21 N -0.44 -6.71 18.54 41.84 0.78 -5.94 16 22 C 0.15 1.41 11.93 -17.12 -0.20 1.21 16 23 N -0.31 -3.58 12.58 30.76 0.39 -3.19 16 24 N -0.30 -3.66 3.87 -11.95 -0.05 -3.70 16 25 C 0.18 2.05 10.94 -16.44 -0.18 1.87 16 26 H 0.09 2.16 6.07 -51.93 -0.32 1.85 16 27 H 0.03 0.67 6.38 -51.93 -0.33 0.34 16 28 H 0.01 0.16 6.75 -51.93 -0.35 -0.19 16 29 H 0.26 6.69 8.31 -40.82 -0.34 6.35 16 30 H 0.08 1.44 6.53 -51.93 -0.34 1.10 16 31 H 0.04 0.54 5.92 -51.93 -0.31 0.23 16 32 H 0.03 0.40 6.28 -51.93 -0.33 0.07 16 33 H 0.09 1.08 7.94 -51.93 -0.41 0.67 16 34 H 0.05 0.66 6.89 -51.93 -0.36 0.30 16 35 H 0.18 1.56 8.03 -52.48 -0.42 1.14 16 36 H 0.21 1.08 8.06 -52.48 -0.42 0.65 16 37 H 0.19 1.75 8.06 -52.49 -0.42 1.32 16 LS Contribution 316.05 15.07 4.76 4.76 Total: -1.00 -29.30 316.05 -6.68 -35.98 By element: Atomic # 1 Polarization: 1.90 SS G_CDS: -3.91 Total: -2.01 kcal Atomic # 6 Polarization: 1.57 SS G_CDS: -3.00 Total: -1.44 kcal Atomic # 7 Polarization: -52.87 SS G_CDS: 0.49 Total: -52.37 kcal Atomic # 14 Polarization: 20.10 SS G_CDS: -5.02 Total: 15.07 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -29.30 -6.68 -35.98 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000576637525.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 195.157 kcal (2) G-P(sol) polarization free energy of solvation -29.302 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 165.855 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.679 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.980 kcal (6) G-S(sol) free energy of system = (1) + (5) 159.176 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds