Wall clock time and date at job start Tue Mar 31 2020 06:00:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09007 * 109.46721 * 2 1 4 4 C 1.50694 * 109.47355 * 239.99710 * 2 1 3 5 5 H 1.08000 * 120.00563 * 239.99848 * 4 2 1 6 6 C 1.37885 * 119.99902 * 60.00012 * 4 2 1 7 7 N 1.31516 * 119.99913 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99766 * 179.97438 * 6 4 2 9 9 H 1.48506 * 109.46985 * 179.97438 * 8 6 4 10 10 H 1.48494 * 109.47276 * 299.99832 * 8 6 4 11 11 H 1.48498 * 109.47150 * 60.00043 * 8 6 4 12 12 N 1.46903 * 109.47096 * 119.99653 * 2 1 3 13 13 C 1.46895 * 110.99749 * 58.95710 * 12 2 1 14 14 C 1.46901 * 110.99984 * 295.00215 * 12 2 1 15 15 C 1.50700 * 109.47017 * 190.00287 * 14 12 2 16 16 C 1.40015 * 120.30960 * 269.72246 * 15 14 12 17 17 N 1.31467 * 120.13189 * 179.72508 * 16 15 14 18 18 C 1.33418 * 120.85339 * 0.58685 * 17 16 15 19 19 C 1.40741 * 132.50290 * 179.70457 * 18 17 16 20 20 C 1.43192 * 126.52124 * 359.94605 * 19 18 17 21 21 N 9.70464 * 105.38167 * 114.34663 * 2 1 3 22 22 C 1.40562 * 106.95159 * 179.97438 * 19 18 17 23 23 N 1.30780 * 108.75687 * 0.02562 * 22 19 18 24 24 N 1.36723 * 120.77072 * 359.66957 * 18 17 16 25 25 C 1.35709 * 120.31852 * 90.00087 * 15 14 12 26 26 H 1.08995 * 109.47131 * 60.00355 * 1 2 3 27 27 H 1.09002 * 109.47106 * 180.02562 * 1 2 3 28 28 H 1.08998 * 109.47089 * 300.00187 * 1 2 3 29 29 H 0.97001 * 119.99646 * 179.97438 * 7 6 4 30 30 H 1.08998 * 109.47176 * 60.00348 * 13 12 2 31 31 H 1.09001 * 109.46775 * 180.02562 * 13 12 2 32 32 H 1.09003 * 109.47375 * 299.99556 * 13 12 2 33 33 H 1.09007 * 109.47082 * 310.00168 * 14 12 2 34 34 H 1.09000 * 109.47389 * 69.99835 * 14 12 2 35 35 H 1.08003 * 119.93819 * 359.97438 * 16 15 14 36 36 H 1.08009 * 125.62276 * 179.97438 * 22 19 18 37 37 H 1.08002 * 120.42167 * 359.95602 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1313 6 6 1.6993 -0.2394 -2.4827 7 7 0.9427 0.8296 -2.6034 8 14 2.3226 -1.1197 -4.0078 9 1 1.8270 -0.4201 -5.2204 10 1 3.8076 -1.1190 -4.0076 11 1 1.8282 -2.5199 -4.0080 12 7 2.0197 -0.6924 1.1995 13 6 1.5284 -2.0760 1.2460 14 6 1.6487 0.0393 2.4181 15 6 2.3679 -0.5569 3.6006 16 6 1.7808 -1.5942 4.3353 17 7 2.4137 -2.1154 5.3629 18 6 3.6134 -1.6613 5.7297 19 6 4.4906 -2.0242 6.7687 20 6 4.2750 -3.0464 7.7480 21 7 4.1041 -3.8575 8.5249 22 6 5.6183 -1.1918 6.6626 23 7 5.4513 -0.3850 5.6469 24 7 4.2176 -0.6463 5.0411 25 6 3.5883 -0.0897 3.9669 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5139 0.8899 29 1 0.7088 1.1611 -3.4845 30 1 1.8764 -2.6150 0.3648 31 1 1.9053 -2.5654 2.1441 32 1 0.4385 -2.0742 1.2640 33 1 1.9297 1.0872 2.3124 34 1 0.5722 -0.0344 2.5726 35 1 0.8077 -1.9697 4.0547 36 1 6.4802 -1.2141 7.3131 37 1 4.0552 0.7123 3.4146 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000576637525.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:00:44 Heat of formation + Delta-G solvation = 141.143308 kcal Electronic energy + Delta-G solvation = -21395.337892 eV Core-core repulsion = 18174.822303 eV Total energy + Delta-G solvation = -3220.515590 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 285.128 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -43.58850 -39.98097 -38.47990 -37.45742 -35.40342 -34.70920 -32.89695 -31.00551 -30.19089 -28.16770 -27.12406 -26.30621 -25.35859 -24.03206 -22.98057 -20.97571 -20.21385 -18.84214 -18.34542 -17.99786 -17.44405 -16.96979 -16.37211 -16.07326 -15.49277 -15.24920 -14.92975 -14.67211 -14.53381 -14.35423 -14.26226 -13.88364 -13.70601 -13.54130 -13.30866 -12.89052 -12.84289 -12.60178 -12.45138 -12.41470 -12.23171 -12.12368 -11.95241 -11.70028 -10.99076 -10.85188 -10.61591 -10.43464 -9.13221 -8.82277 -8.06809 -6.15790 -0.72118 -0.32204 0.78038 1.03750 1.45768 1.47414 1.53486 1.65282 2.01211 2.46369 2.59230 2.64521 2.81339 3.23812 3.32632 3.42969 3.50582 3.74463 3.85319 4.07225 4.31347 4.40233 4.57563 4.68050 4.76120 4.82216 4.93578 4.95879 5.03779 5.05645 5.21890 5.28236 5.30963 5.63689 5.77137 5.88633 6.18173 6.24293 6.37713 6.50292 6.61445 6.75799 6.97846 7.53442 8.98172 Molecular weight = 285.13amu Principal moments of inertia in cm(-1) A = 0.030214 B = 0.003396 C = 0.003351 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 926.497492 B = 8244.203891 C = 8354.263723 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.218 3.782 3 H 0.018 0.982 4 C -0.514 4.514 5 H 0.054 0.946 6 C 0.017 3.983 7 N -0.917 5.917 8 Si 0.947 3.053 9 H -0.288 1.288 10 H -0.276 1.276 11 H -0.275 1.275 12 N -0.542 5.542 13 C 0.034 3.966 14 C 0.104 3.896 15 C -0.159 4.159 16 C 0.218 3.782 17 N -0.498 5.498 18 C 0.306 3.694 19 C -0.221 4.221 20 C 0.325 3.675 21 N -0.480 5.480 22 C 0.168 3.832 23 N -0.322 5.322 24 N -0.304 5.304 25 C 0.189 3.811 26 H 0.057 0.943 27 H 0.033 0.967 28 H 0.038 0.962 29 H 0.260 0.740 30 H 0.050 0.950 31 H 0.063 0.937 32 H 0.031 0.969 33 H 0.095 0.905 34 H 0.068 0.932 35 H 0.208 0.792 36 H 0.250 0.750 37 H 0.207 0.793 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.539 0.232 13.551 14.007 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.111 3.889 3 H 0.036 0.964 4 C -0.552 4.552 5 H 0.073 0.927 6 C -0.182 4.182 7 N -0.557 5.557 8 Si 0.774 3.226 9 H -0.214 1.214 10 H -0.201 1.201 11 H -0.200 1.200 12 N -0.265 5.265 13 C -0.114 4.114 14 C -0.024 4.024 15 C -0.165 4.165 16 C 0.039 3.961 17 N -0.210 5.210 18 C 0.070 3.930 19 C -0.239 4.239 20 C 0.012 3.988 21 N -0.158 5.158 22 C -0.016 4.016 23 N -0.142 5.142 24 N -0.070 5.070 25 C 0.053 3.947 26 H 0.076 0.924 27 H 0.052 0.948 28 H 0.057 0.943 29 H 0.069 0.931 30 H 0.069 0.931 31 H 0.082 0.918 32 H 0.050 0.950 33 H 0.113 0.887 34 H 0.086 0.914 35 H 0.224 0.776 36 H 0.266 0.734 37 H 0.223 0.777 Dipole moment (debyes) X Y Z Total from point charges 4.128 -0.623 14.541 15.128 hybrid contribution -0.711 -0.065 -1.538 1.696 sum 3.417 -0.687 13.003 13.462 Atomic orbital electron populations 1.22241 0.99994 0.99452 1.00567 1.19049 0.90190 0.93227 0.86385 0.96386 1.21382 1.30399 1.12391 0.91075 0.92742 1.25537 0.95530 0.95756 1.01409 1.69974 1.37819 1.24020 1.23896 0.85778 0.78659 0.78757 0.79389 1.21404 1.20130 1.20005 1.62303 1.59975 1.02640 1.01609 1.22262 0.97875 0.90180 1.01083 1.20875 0.97528 0.98257 0.85790 1.20525 0.95267 1.00254 1.00487 1.24027 0.99206 0.87618 0.85275 1.68303 1.05664 1.28888 1.18111 1.20604 0.90641 0.88425 0.93360 1.15161 0.99732 1.07454 1.01596 1.24203 0.92268 0.91106 0.91261 1.81249 1.09169 1.12512 1.12879 1.24683 0.96862 0.87264 0.92741 1.77720 0.95948 1.26860 1.13721 1.47028 1.14965 1.24175 1.20829 1.22464 0.91095 0.96924 0.84182 0.92418 0.94827 0.94346 0.93110 0.93092 0.91828 0.95011 0.88699 0.91424 0.77577 0.73379 0.77661 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -6.63 8.28 71.98 0.60 -6.04 16 2 C 0.22 9.30 2.34 44.17 0.10 9.40 16 3 H 0.02 0.86 8.03 -2.38 -0.02 0.84 16 4 C -0.51 -25.46 7.94 25.60 0.20 -25.26 16 5 H 0.05 2.73 6.75 -2.91 -0.02 2.71 16 6 C 0.02 0.85 5.30 84.66 0.45 1.29 16 7 N -0.92 -48.94 11.32 21.45 0.24 -48.70 16 8 Si 0.95 41.32 29.54 68.60 2.03 43.35 16 9 H -0.29 -12.51 7.11 99.48 0.71 -11.80 16 10 H -0.28 -11.90 7.11 99.48 0.71 -11.20 16 11 H -0.27 -11.74 7.11 99.48 0.71 -11.03 16 12 N -0.54 -17.86 4.73 -906.03 -4.29 -22.15 16 13 C 0.03 1.05 8.58 127.69 1.10 2.14 16 14 C 0.10 2.44 4.57 85.56 0.39 2.83 16 15 C -0.16 -3.18 4.84 -20.02 -0.10 -3.28 16 16 C 0.22 4.26 9.21 85.18 0.78 5.05 16 17 N -0.50 -12.11 10.47 -191.78 -2.01 -14.12 16 18 C 0.31 7.49 7.88 133.91 1.06 8.55 16 19 C -0.22 -4.96 6.03 -20.86 -0.13 -5.08 16 20 C 0.33 8.36 15.84 88.33 1.40 9.76 16 21 N -0.48 -14.27 18.54 19.00 0.35 -13.92 16 22 C 0.17 2.79 11.93 85.42 1.02 3.81 16 23 N -0.32 -6.77 12.58 -56.59 -0.71 -7.48 16 24 N -0.30 -6.86 3.87 -191.71 -0.74 -7.60 16 25 C 0.19 3.79 10.94 83.40 0.91 4.70 16 26 H 0.06 2.76 6.07 -2.39 -0.01 2.74 16 27 H 0.03 1.32 6.38 -2.39 -0.02 1.31 16 28 H 0.04 1.30 6.75 -2.39 -0.02 1.28 16 29 H 0.26 13.42 8.31 -92.71 -0.77 12.65 16 30 H 0.05 1.83 6.53 -2.39 -0.02 1.82 16 31 H 0.06 1.61 5.92 -2.39 -0.01 1.60 16 32 H 0.03 0.92 6.28 -2.39 -0.01 0.91 16 33 H 0.09 2.12 7.94 -2.38 -0.02 2.10 16 34 H 0.07 1.43 6.89 -2.39 -0.02 1.42 16 35 H 0.21 2.87 8.03 -2.91 -0.02 2.85 16 36 H 0.25 1.64 8.06 -2.91 -0.02 1.61 16 37 H 0.21 3.32 8.06 -2.91 -0.02 3.30 16 Total: -1.00 -63.42 316.05 3.77 -59.65 By element: Atomic # 1 Polarization: 1.99 SS G_CDS: 1.12 Total: 3.10 kcal Atomic # 6 Polarization: 0.09 SS G_CDS: 7.79 Total: 7.88 kcal Atomic # 7 Polarization: -106.82 SS G_CDS: -7.15 Total: -113.98 kcal Atomic # 14 Polarization: 41.32 SS G_CDS: 2.03 Total: 43.35 kcal Total: -63.42 3.77 -59.65 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000576637525.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 200.790 kcal (2) G-P(sol) polarization free energy of solvation -63.420 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 137.371 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.773 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.647 kcal (6) G-S(sol) free energy of system = (1) + (5) 141.143 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds