Wall clock time and date at job start Tue Mar 31 2020 06:26:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31420 * 1 3 3 Si 1.86793 * 119.99880 * 2 1 4 4 H 1.48508 * 109.47366 * 270.00076 * 3 2 1 5 5 H 1.48509 * 109.47459 * 29.99982 * 3 2 1 6 6 H 1.48506 * 109.47272 * 150.00031 * 3 2 1 7 7 C 1.38945 * 120.00012 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00127 * 198.28297 * 7 2 1 9 9 N 1.37103 * 120.00090 * 18.28659 * 7 2 1 10 10 C 1.34778 * 120.00070 * 43.87959 * 9 7 2 11 11 O 1.21298 * 119.99910 * 0.02562 * 10 9 7 12 12 C 1.50697 * 120.00346 * 179.97438 * 10 9 7 13 13 H 1.09004 * 109.67325 * 59.99961 * 12 10 9 14 14 C 1.53315 * 109.71352 * 180.53495 * 12 10 9 15 15 C 1.52754 * 108.35846 * 189.66803 * 14 12 10 16 16 C 1.50642 * 110.56902 * 308.86951 * 15 14 12 17 17 C 1.38908 * 117.74448 * 197.52294 * 16 15 14 18 18 C 1.37938 * 120.54771 * 180.33466 * 17 16 15 19 19 C 1.38263 * 119.76491 * 359.97438 * 18 17 16 20 20 C 1.37933 * 119.77588 * 359.89393 * 19 18 17 21 21 C 1.37660 * 122.56715 * 17.64281 * 16 15 14 22 22 C 1.50631 * 122.57471 * 359.57369 * 21 16 15 23 23 C 1.46494 * 119.99862 * 223.88206 * 9 7 2 24 24 C 1.53001 * 117.50286 * 7.83134 * 23 9 7 25 25 C 1.52997 * 117.50283 * 299.16943 * 23 9 7 26 26 H 0.96993 * 120.00013 * 354.87639 * 1 2 3 27 27 H 1.09003 * 109.68417 * 309.36457 * 14 12 10 28 28 H 1.09000 * 109.68775 * 69.93100 * 14 12 10 29 29 H 1.08997 * 109.26195 * 188.59303 * 15 14 12 30 30 H 1.09001 * 109.22617 * 69.13045 * 15 14 12 31 31 H 1.08006 * 119.72649 * 0.31039 * 17 16 15 32 32 H 1.07997 * 120.11352 * 179.97438 * 18 17 16 33 33 H 1.08001 * 120.10850 * 179.89365 * 19 18 17 34 34 H 1.07995 * 119.72512 * 179.97438 * 20 19 18 35 35 H 1.09002 * 109.25255 * 257.23087 * 22 21 16 36 36 H 1.08996 * 109.25343 * 137.80165 * 22 21 16 37 37 H 1.09006 * 115.54841 * 153.50329 * 23 9 7 38 38 H 1.09004 * 117.49348 * 0.02562 * 24 23 9 39 39 H 1.09003 * 117.49929 * 145.02088 * 24 23 9 40 40 H 1.08999 * 117.50503 * 214.98286 * 25 23 9 41 41 H 1.09008 * 117.49858 * 359.97438 * 25 23 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 2.4956 2.0465 -1.4001 5 1 1.4456 2.6527 0.7001 6 1 3.5457 1.4402 0.7000 7 6 2.0089 -1.2033 -0.0005 8 1 3.0480 -1.2271 0.2929 9 7 1.3754 -2.3605 -0.3736 10 6 0.5736 -2.3707 -1.4569 11 8 0.4129 -1.3562 -2.1021 12 6 -0.1224 -3.6428 -1.8674 13 1 -0.7705 -3.9835 -1.0598 14 6 -0.9573 -3.3917 -3.1285 15 6 -1.8326 -4.6184 -3.3781 16 6 -1.0012 -5.8745 -3.3599 17 6 -1.5470 -7.0195 -3.9262 18 6 -0.8389 -8.2032 -3.9350 19 6 0.4249 -8.2512 -3.3762 20 6 0.9697 -7.1147 -2.8159 21 6 0.2587 -5.9213 -2.8072 22 6 0.9154 -4.7182 -2.1825 23 6 1.5699 -3.5859 0.4053 24 6 2.3397 -3.4711 1.7225 25 6 2.9928 -4.1384 0.5096 26 1 -0.4850 0.8366 0.0750 27 1 -1.5877 -2.5145 -2.9829 28 1 -0.2965 -3.2323 -3.9806 29 1 -2.3176 -4.5225 -4.3495 30 1 -2.5942 -4.6802 -2.6007 31 1 -2.5342 -6.9827 -4.3628 32 1 -1.2702 -9.0893 -4.3767 33 1 0.9835 -9.1755 -3.3785 34 1 1.9567 -7.1532 -2.3793 35 1 1.6545 -4.3128 -2.8735 36 1 1.4130 -5.0186 -1.2605 37 1 0.7525 -4.3057 0.3611 38 1 2.7011 -2.4836 2.0098 39 1 2.0290 -4.1156 2.5449 40 1 3.1116 -5.2216 0.5345 41 1 3.7842 -3.5903 -0.0017 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000577283248.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:26:05 Heat of formation + Delta-G solvation = 17.308677 kcal Electronic energy + Delta-G solvation = -22946.935333 eV Core-core repulsion = 19792.297463 eV Total energy + Delta-G solvation = -3154.637870 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 285.147 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.04071 -38.52185 -36.28674 -35.14740 -32.73699 -32.39466 -30.88161 -29.89285 -28.63680 -25.18127 -23.67494 -22.56809 -22.03616 -21.62640 -21.09678 -19.75414 -18.53199 -16.59562 -16.22397 -16.05736 -15.33492 -14.82326 -14.74303 -14.20353 -14.04206 -13.72232 -13.41995 -13.27160 -13.14410 -12.75023 -12.54557 -12.17917 -11.74674 -11.67250 -11.27812 -11.18745 -11.05441 -10.89750 -10.81628 -10.63042 -10.47322 -10.34027 -10.12710 -10.00819 -9.82820 -9.64889 -8.66698 -8.61927 -8.35527 -7.91865 -6.97782 -6.08195 -3.83402 1.49473 1.51738 3.32093 3.38807 3.42185 3.88120 4.14371 4.28756 4.74477 4.81679 4.90773 4.97743 5.09684 5.13632 5.27567 5.40518 5.42376 5.52259 5.57325 5.60517 5.68159 5.77491 5.86767 5.89913 5.95457 6.06233 6.17004 6.17556 6.23043 6.28108 6.32249 6.38066 6.49852 6.59990 6.62212 6.76949 6.81678 6.85304 6.91616 6.96631 7.17489 7.64796 8.30852 9.10468 9.20628 9.70592 10.34729 11.01032 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.023868 B = 0.005224 C = 0.004520 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1172.823231 B = 5358.185827 C = 6193.138836 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.834 5.834 2 C 0.074 3.926 3 Si 0.911 3.089 4 H -0.278 1.278 5 H -0.287 1.287 6 H -0.274 1.274 7 C -0.349 4.349 8 H 0.076 0.924 9 N -0.428 5.428 10 C 0.490 3.510 11 O -0.531 6.531 12 C -0.099 4.099 13 H 0.079 0.921 14 C -0.094 4.094 15 C -0.082 4.082 16 C -0.073 4.073 17 C -0.123 4.123 18 C -0.130 4.130 19 C -0.128 4.128 20 C -0.121 4.121 21 C -0.064 4.064 22 C -0.079 4.079 23 C 0.078 3.922 24 C -0.178 4.178 25 C -0.209 4.209 26 H 0.263 0.737 27 H 0.077 0.923 28 H 0.064 0.936 29 H 0.072 0.928 30 H 0.074 0.926 31 H 0.117 0.883 32 H 0.116 0.884 33 H 0.117 0.883 34 H 0.120 0.880 35 H 0.077 0.923 36 H 0.089 0.911 37 H 0.104 0.896 38 H 0.107 0.893 39 H 0.082 0.918 40 H 0.083 0.917 41 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.999 -14.477 -3.544 14.938 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.467 5.467 2 C -0.136 4.136 3 Si 0.739 3.261 4 H -0.204 1.204 5 H -0.213 1.213 6 H -0.199 1.199 7 C -0.476 4.476 8 H 0.094 0.906 9 N -0.148 5.148 10 C 0.277 3.723 11 O -0.408 6.408 12 C -0.121 4.121 13 H 0.097 0.903 14 C -0.132 4.132 15 C -0.119 4.119 16 C -0.073 4.073 17 C -0.141 4.141 18 C -0.148 4.148 19 C -0.146 4.146 20 C -0.139 4.139 21 C -0.064 4.064 22 C -0.116 4.116 23 C -0.029 4.029 24 C -0.215 4.215 25 C -0.248 4.248 26 H 0.073 0.927 27 H 0.096 0.904 28 H 0.083 0.917 29 H 0.090 0.910 30 H 0.092 0.908 31 H 0.135 0.865 32 H 0.134 0.866 33 H 0.135 0.865 34 H 0.138 0.862 35 H 0.096 0.904 36 H 0.107 0.893 37 H 0.122 0.878 38 H 0.125 0.875 39 H 0.101 0.899 40 H 0.101 0.899 41 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -1.271 -13.790 -3.955 14.402 hybrid contribution 0.362 0.590 0.193 0.719 sum -0.909 -13.200 -3.761 13.755 Atomic orbital electron populations 1.69828 1.06521 1.27306 1.43088 1.25219 0.94801 0.99294 0.94331 0.86235 0.79285 0.82323 0.78293 1.20362 1.21343 1.19946 1.18844 0.94467 0.83922 1.50344 0.90601 1.42775 1.43925 1.06491 1.21629 1.19670 0.82823 0.88537 0.81286 1.90522 1.62366 1.34406 1.53504 1.21202 0.97163 0.95286 0.98453 0.90274 1.21291 0.98151 0.96677 0.97109 1.20568 0.97462 0.91976 1.01908 1.19751 0.94430 0.95405 0.97704 1.21142 0.99798 0.92696 1.00486 1.20981 0.95305 0.97686 1.00874 1.20998 0.95941 0.98131 0.99484 1.21177 0.99893 0.92486 1.00349 1.19801 0.93776 0.95243 0.97590 1.20699 0.97648 0.92000 1.01257 1.21727 0.92930 0.91661 0.96563 1.23115 1.04740 1.02546 0.91147 1.23337 0.98757 0.98827 1.03862 0.92665 0.90388 0.91700 0.90997 0.90761 0.86510 0.86594 0.86514 0.86229 0.90430 0.89293 0.87813 0.87496 0.89936 0.89878 0.89049 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -24.71 11.71 55.50 0.65 -24.06 16 2 C 0.07 2.08 4.38 -17.47 -0.08 2.00 16 3 Si 0.91 22.00 29.59 -169.99 -5.03 16.97 16 4 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 5 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 6 H -0.27 -6.32 7.11 56.52 0.40 -5.91 16 7 C -0.35 -9.47 7.78 -14.93 -0.12 -9.58 16 8 H 0.08 2.00 7.45 -52.49 -0.39 1.61 16 9 N -0.43 -10.54 2.85 -107.73 -0.31 -10.85 16 10 C 0.49 12.23 6.35 -10.99 -0.07 12.16 16 11 O -0.53 -15.50 13.58 5.54 0.08 -15.43 16 12 C -0.10 -1.91 1.74 -91.75 -0.16 -2.07 16 13 H 0.08 1.50 7.53 -51.93 -0.39 1.11 16 14 C -0.09 -1.69 4.72 -26.69 -0.13 -1.82 16 15 C -0.08 -1.17 5.67 -28.04 -0.16 -1.33 16 16 C -0.07 -1.04 5.74 -104.61 -0.60 -1.64 16 17 C -0.12 -1.53 9.61 -39.44 -0.38 -1.90 16 18 C -0.13 -1.49 10.05 -39.68 -0.40 -1.89 16 19 C -0.13 -1.48 10.05 -39.68 -0.40 -1.88 16 20 C -0.12 -1.58 9.61 -39.44 -0.38 -1.95 16 21 C -0.06 -0.95 5.74 -104.61 -0.60 -1.55 16 22 C -0.08 -1.31 4.53 -28.05 -0.13 -1.43 16 23 C 0.08 1.53 4.35 -67.93 -0.30 1.23 16 24 C -0.18 -3.20 9.81 -26.69 -0.26 -3.46 16 25 C -0.21 -3.50 9.60 -26.70 -0.26 -3.76 16 26 H 0.26 7.49 8.32 -40.82 -0.34 7.15 16 27 H 0.08 1.54 7.81 -51.93 -0.41 1.14 16 28 H 0.06 1.20 8.10 -51.93 -0.42 0.78 16 29 H 0.07 0.90 8.12 -51.93 -0.42 0.48 16 30 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 31 H 0.12 1.21 8.05 -52.48 -0.42 0.78 16 32 H 0.12 1.03 8.06 -52.49 -0.42 0.61 16 33 H 0.12 1.07 8.06 -52.49 -0.42 0.65 16 34 H 0.12 1.37 8.05 -52.49 -0.42 0.95 16 35 H 0.08 1.36 8.11 -51.93 -0.42 0.94 16 36 H 0.09 1.40 4.75 -51.93 -0.25 1.16 16 37 H 0.10 1.87 6.13 -51.93 -0.32 1.55 16 38 H 0.11 2.15 6.85 -51.93 -0.36 1.80 16 39 H 0.08 1.27 8.14 -51.93 -0.42 0.85 16 40 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 41 H 0.09 1.65 8.14 -51.92 -0.42 1.23 16 LS Contribution 326.75 15.07 4.92 4.92 Total: -1.00 -32.08 326.75 -9.98 -42.06 By element: Atomic # 1 Polarization: 11.14 SS G_CDS: -5.89 Total: 5.25 kcal Atomic # 6 Polarization: -14.47 SS G_CDS: -4.40 Total: -18.88 kcal Atomic # 7 Polarization: -35.25 SS G_CDS: 0.34 Total: -34.91 kcal Atomic # 8 Polarization: -15.50 SS G_CDS: 0.08 Total: -15.43 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -5.03 Total: 16.97 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -32.08 -9.98 -42.06 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000577283248.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.370 kcal (2) G-P(sol) polarization free energy of solvation -32.081 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.290 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.981 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.062 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.309 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds