Wall clock time and date at job start Tue Mar 31 2020 06:26:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31420 * 1 3 3 Si 1.86793 * 119.99880 * 2 1 4 4 H 1.48508 * 109.47366 * 270.00076 * 3 2 1 5 5 H 1.48509 * 109.47459 * 29.99982 * 3 2 1 6 6 H 1.48506 * 109.47272 * 150.00031 * 3 2 1 7 7 C 1.38945 * 120.00012 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00127 * 198.28297 * 7 2 1 9 9 N 1.37103 * 120.00090 * 18.28659 * 7 2 1 10 10 C 1.34778 * 120.00070 * 43.87959 * 9 7 2 11 11 O 1.21298 * 119.99910 * 0.02562 * 10 9 7 12 12 C 1.50697 * 120.00346 * 179.97438 * 10 9 7 13 13 H 1.09004 * 109.67325 * 59.99961 * 12 10 9 14 14 C 1.53315 * 109.71352 * 180.53495 * 12 10 9 15 15 C 1.52754 * 108.35846 * 189.66803 * 14 12 10 16 16 C 1.50642 * 110.56902 * 308.86951 * 15 14 12 17 17 C 1.38908 * 117.74448 * 197.52294 * 16 15 14 18 18 C 1.37938 * 120.54771 * 180.33466 * 17 16 15 19 19 C 1.38263 * 119.76491 * 359.97438 * 18 17 16 20 20 C 1.37933 * 119.77588 * 359.89393 * 19 18 17 21 21 C 1.37660 * 122.56715 * 17.64281 * 16 15 14 22 22 C 1.50631 * 122.57471 * 359.57369 * 21 16 15 23 23 C 1.46494 * 119.99862 * 223.88206 * 9 7 2 24 24 C 1.53001 * 117.50286 * 7.83134 * 23 9 7 25 25 C 1.52997 * 117.50283 * 299.16943 * 23 9 7 26 26 H 0.96993 * 120.00013 * 354.87639 * 1 2 3 27 27 H 1.09003 * 109.68417 * 309.36457 * 14 12 10 28 28 H 1.09000 * 109.68775 * 69.93100 * 14 12 10 29 29 H 1.08997 * 109.26195 * 188.59303 * 15 14 12 30 30 H 1.09001 * 109.22617 * 69.13045 * 15 14 12 31 31 H 1.08006 * 119.72649 * 0.31039 * 17 16 15 32 32 H 1.07997 * 120.11352 * 179.97438 * 18 17 16 33 33 H 1.08001 * 120.10850 * 179.89365 * 19 18 17 34 34 H 1.07995 * 119.72512 * 179.97438 * 20 19 18 35 35 H 1.09002 * 109.25255 * 257.23087 * 22 21 16 36 36 H 1.08996 * 109.25343 * 137.80165 * 22 21 16 37 37 H 1.09006 * 115.54841 * 153.50329 * 23 9 7 38 38 H 1.09004 * 117.49348 * 0.02562 * 24 23 9 39 39 H 1.09003 * 117.49929 * 145.02088 * 24 23 9 40 40 H 1.08999 * 117.50503 * 214.98286 * 25 23 9 41 41 H 1.09008 * 117.49858 * 359.97438 * 25 23 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 2.4956 2.0465 -1.4001 5 1 1.4456 2.6527 0.7001 6 1 3.5457 1.4402 0.7000 7 6 2.0089 -1.2033 -0.0005 8 1 3.0480 -1.2271 0.2929 9 7 1.3754 -2.3605 -0.3736 10 6 0.5736 -2.3707 -1.4569 11 8 0.4129 -1.3562 -2.1021 12 6 -0.1224 -3.6428 -1.8674 13 1 -0.7705 -3.9835 -1.0598 14 6 -0.9573 -3.3917 -3.1285 15 6 -1.8326 -4.6184 -3.3781 16 6 -1.0012 -5.8745 -3.3599 17 6 -1.5470 -7.0195 -3.9262 18 6 -0.8389 -8.2032 -3.9350 19 6 0.4249 -8.2512 -3.3762 20 6 0.9697 -7.1147 -2.8159 21 6 0.2587 -5.9213 -2.8072 22 6 0.9154 -4.7182 -2.1825 23 6 1.5699 -3.5859 0.4053 24 6 2.3397 -3.4711 1.7225 25 6 2.9928 -4.1384 0.5096 26 1 -0.4850 0.8366 0.0750 27 1 -1.5877 -2.5145 -2.9829 28 1 -0.2965 -3.2323 -3.9806 29 1 -2.3176 -4.5225 -4.3495 30 1 -2.5942 -4.6802 -2.6007 31 1 -2.5342 -6.9827 -4.3628 32 1 -1.2702 -9.0893 -4.3767 33 1 0.9835 -9.1755 -3.3785 34 1 1.9567 -7.1532 -2.3793 35 1 1.6545 -4.3128 -2.8735 36 1 1.4130 -5.0186 -1.2605 37 1 0.7525 -4.3057 0.3611 38 1 2.7011 -2.4836 2.0098 39 1 2.0290 -4.1156 2.5449 40 1 3.1116 -5.2216 0.5345 41 1 3.7842 -3.5903 -0.0017 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000577283248.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:26:04 Heat of formation + Delta-G solvation = 0.177497 kcal Electronic energy + Delta-G solvation = -22947.678196 eV Core-core repulsion = 19792.297463 eV Total energy + Delta-G solvation = -3155.380734 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 285.147 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -41.35325 -40.03487 -37.89865 -36.57254 -34.69627 -33.56796 -32.71501 -31.12595 -29.81972 -27.08604 -25.01954 -23.93612 -23.17048 -22.93705 -22.66230 -21.29627 -20.04058 -18.36434 -17.85720 -17.22868 -16.72705 -16.52797 -16.11500 -15.72748 -15.29968 -15.24680 -14.89545 -14.66787 -14.58494 -13.96553 -13.89512 -13.60194 -13.42627 -13.01944 -12.86729 -12.79141 -12.67612 -12.32739 -12.28360 -12.20398 -12.05254 -11.88400 -11.75658 -11.42027 -11.26125 -11.15942 -10.70467 -9.87673 -9.56226 -9.36760 -8.94157 -8.19518 -5.97417 0.54537 0.56188 1.34428 1.43007 1.47558 2.25312 2.41180 2.93015 3.07028 3.13354 3.35643 3.72807 3.78431 3.95136 4.09990 4.13581 4.18441 4.22440 4.32277 4.33860 4.41427 4.47936 4.51254 4.60436 4.71561 4.81939 4.89777 4.93320 4.97801 5.03476 5.10179 5.16363 5.23012 5.28504 5.37100 5.41113 5.48783 5.50043 5.68928 5.70554 5.87060 6.21071 6.23083 7.05090 7.22890 7.72248 8.39140 8.89443 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.023868 B = 0.005224 C = 0.004520 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1172.823231 B = 5358.185827 C = 6193.138836 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.873 5.873 2 C 0.021 3.979 3 Si 0.968 3.032 4 H -0.292 1.292 5 H -0.281 1.281 6 H -0.253 1.253 7 C -0.356 4.356 8 H 0.077 0.923 9 N -0.441 5.441 10 C 0.473 3.527 11 O -0.588 6.588 12 C -0.087 4.087 13 H 0.082 0.918 14 C -0.090 4.090 15 C -0.072 4.072 16 C -0.091 4.091 17 C -0.127 4.127 18 C -0.127 4.127 19 C -0.126 4.126 20 C -0.127 4.127 21 C -0.086 4.086 22 C -0.064 4.064 23 C 0.048 3.952 24 C -0.176 4.176 25 C -0.178 4.178 26 H 0.258 0.742 27 H 0.048 0.952 28 H 0.050 0.950 29 H 0.091 0.909 30 H 0.081 0.919 31 H 0.137 0.863 32 H 0.146 0.854 33 H 0.146 0.854 34 H 0.133 0.867 35 H 0.058 0.942 36 H 0.098 0.902 37 H 0.122 0.878 38 H 0.080 0.920 39 H 0.116 0.884 40 H 0.126 0.874 41 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.468 -18.054 -3.429 18.383 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.508 5.508 2 C -0.185 4.185 3 Si 0.794 3.206 4 H -0.219 1.219 5 H -0.206 1.206 6 H -0.177 1.177 7 C -0.483 4.483 8 H 0.095 0.905 9 N -0.161 5.161 10 C 0.262 3.738 11 O -0.469 6.469 12 C -0.109 4.109 13 H 0.100 0.900 14 C -0.128 4.128 15 C -0.109 4.109 16 C -0.091 4.091 17 C -0.145 4.145 18 C -0.144 4.144 19 C -0.144 4.144 20 C -0.145 4.145 21 C -0.086 4.086 22 C -0.101 4.101 23 C -0.057 4.057 24 C -0.213 4.213 25 C -0.216 4.216 26 H 0.068 0.932 27 H 0.067 0.933 28 H 0.069 0.931 29 H 0.109 0.891 30 H 0.099 0.901 31 H 0.155 0.845 32 H 0.164 0.836 33 H 0.163 0.837 34 H 0.151 0.849 35 H 0.076 0.924 36 H 0.116 0.884 37 H 0.140 0.860 38 H 0.098 0.902 39 H 0.134 0.866 40 H 0.144 0.856 41 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -0.706 -17.406 -3.799 17.830 hybrid contribution 0.245 1.600 0.142 1.625 sum -0.461 -15.806 -3.657 16.230 Atomic orbital electron populations 1.69943 1.08009 1.27505 1.45381 1.26039 0.95497 1.02556 0.94382 0.85343 0.79109 0.78728 0.77463 1.21926 1.20640 1.17693 1.19103 0.94730 0.85293 1.49181 0.90501 1.42986 1.43482 1.07520 1.22139 1.20666 0.82576 0.89741 0.80793 1.90469 1.64359 1.36825 1.55266 1.21080 0.97602 0.93376 0.98853 0.89953 1.21200 0.97908 0.97663 0.96024 1.20474 0.96887 0.90327 1.03198 1.19801 0.94521 0.95892 0.98858 1.21378 1.00824 0.92296 0.99976 1.21392 0.95061 0.98259 0.99724 1.21370 0.96186 0.98614 0.98205 1.21353 1.00413 0.92187 1.00536 1.19689 0.94586 0.95089 0.99258 1.20496 0.96373 0.91837 1.01399 1.21988 0.95476 0.90464 0.97813 1.23171 1.04107 1.02195 0.91853 1.23347 0.95686 1.00930 1.01652 0.93246 0.93333 0.93119 0.89098 0.90073 0.84477 0.83608 0.83674 0.84926 0.92383 0.88422 0.86014 0.90171 0.86587 0.85610 0.90612 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -54.17 11.71 21.66 0.25 -53.92 16 2 C 0.02 1.23 4.38 84.92 0.37 1.60 16 3 Si 0.97 46.63 29.59 68.60 2.03 48.66 16 4 H -0.29 -14.66 7.11 99.48 0.71 -13.95 16 5 H -0.28 -13.08 7.11 99.48 0.71 -12.37 16 6 H -0.25 -11.16 7.11 99.48 0.71 -10.46 16 7 C -0.36 -19.87 7.78 84.04 0.65 -19.22 16 8 H 0.08 4.16 7.45 -2.91 -0.02 4.14 16 9 N -0.44 -22.36 2.85 -613.13 -1.75 -24.10 16 10 C 0.47 24.75 6.35 87.66 0.56 25.31 16 11 O -0.59 -36.52 13.58 -3.09 -0.04 -36.56 16 12 C -0.09 -3.48 1.74 -11.52 -0.02 -3.50 16 13 H 0.08 3.19 7.53 -2.38 -0.02 3.17 16 14 C -0.09 -3.37 4.72 30.62 0.14 -3.23 16 15 C -0.07 -2.01 5.67 29.75 0.17 -1.84 16 16 C -0.09 -2.43 5.74 -19.86 -0.11 -2.54 16 17 C -0.13 -2.72 9.61 22.36 0.21 -2.50 16 18 C -0.13 -2.33 10.05 22.20 0.22 -2.11 16 19 C -0.13 -2.39 10.05 22.20 0.22 -2.16 16 20 C -0.13 -2.92 9.61 22.36 0.21 -2.70 16 21 C -0.09 -2.41 5.74 -19.86 -0.11 -2.53 16 22 C -0.06 -2.10 4.53 29.74 0.13 -1.96 16 23 C 0.05 1.84 4.35 44.99 0.20 2.03 16 24 C -0.18 -6.04 9.81 30.62 0.30 -5.74 16 25 C -0.18 -5.53 9.60 30.62 0.29 -5.24 16 26 H 0.26 15.47 8.32 -92.71 -0.77 14.70 16 27 H 0.05 2.06 7.81 -2.39 -0.02 2.05 16 28 H 0.05 1.99 8.10 -2.39 -0.02 1.97 16 29 H 0.09 2.16 8.12 -2.39 -0.02 2.14 16 30 H 0.08 2.13 8.14 -2.39 -0.02 2.11 16 31 H 0.14 2.31 8.05 -2.91 -0.02 2.29 16 32 H 0.15 1.81 8.06 -2.91 -0.02 1.79 16 33 H 0.15 1.91 8.06 -2.91 -0.02 1.88 16 34 H 0.13 2.60 8.05 -2.91 -0.02 2.58 16 35 H 0.06 2.09 8.11 -2.39 -0.02 2.07 16 36 H 0.10 2.94 4.75 -2.39 -0.01 2.93 16 37 H 0.12 4.22 6.13 -2.38 -0.01 4.20 16 38 H 0.08 3.21 6.85 -2.38 -0.02 3.20 16 39 H 0.12 3.19 8.14 -2.39 -0.02 3.17 16 40 H 0.13 2.89 8.14 -2.39 -0.02 2.87 16 41 H 0.08 2.63 8.14 -2.38 -0.02 2.61 16 Total: -1.00 -74.12 326.75 4.97 -69.16 By element: Atomic # 1 Polarization: 22.07 SS G_CDS: 1.02 Total: 23.09 kcal Atomic # 6 Polarization: -29.77 SS G_CDS: 3.45 Total: -26.32 kcal Atomic # 7 Polarization: -76.53 SS G_CDS: -1.49 Total: -78.02 kcal Atomic # 8 Polarization: -36.52 SS G_CDS: -0.04 Total: -36.56 kcal Atomic # 14 Polarization: 46.63 SS G_CDS: 2.03 Total: 48.66 kcal Total: -74.12 4.97 -69.16 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000577283248.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.333 kcal (2) G-P(sol) polarization free energy of solvation -74.121 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.788 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.966 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.156 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.177 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds