Wall clock time and date at job start Tue Mar 31 2020 06:26:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31408 * 1 3 3 Si 1.86804 * 119.99904 * 2 1 4 4 H 1.48494 * 109.47299 * 266.19277 * 3 2 1 5 5 H 1.48503 * 109.46914 * 26.19481 * 3 2 1 6 6 H 1.48504 * 109.47144 * 146.19050 * 3 2 1 7 7 C 1.38948 * 120.00126 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99895 * 348.40153 * 7 2 1 9 9 N 1.37104 * 119.99973 * 168.40523 * 7 2 1 10 10 C 1.34774 * 119.99771 * 146.59160 * 9 7 2 11 11 O 1.21294 * 120.00161 * 4.78794 * 10 9 7 12 12 C 1.50705 * 119.99896 * 184.79283 * 10 9 7 13 13 H 1.09003 * 109.67892 * 323.78773 * 12 10 9 14 14 C 1.53325 * 109.71138 * 203.24897 * 12 10 9 15 15 C 1.52738 * 108.38096 * 170.37354 * 14 12 10 16 16 C 1.50631 * 110.58873 * 51.09018 * 15 14 12 17 17 C 1.38906 * 117.75315 * 162.46143 * 16 15 14 18 18 C 1.37931 * 120.54542 * 179.36609 * 17 16 15 19 19 C 1.38268 * 119.77350 * 0.58643 * 18 17 16 20 20 C 1.37931 * 119.76558 * 359.55260 * 19 18 17 21 21 C 1.37671 * 122.56587 * 342.29683 * 16 15 14 22 22 C 1.50632 * 122.56113 * 0.61439 * 21 16 15 23 23 C 1.46501 * 119.99900 * 326.58960 * 9 7 2 24 24 C 1.52998 * 117.49761 * 312.43732 * 23 9 7 25 25 C 1.53003 * 117.49401 * 243.81543 * 23 9 7 26 26 H 0.96999 * 120.00171 * 0.02562 * 1 2 3 27 27 H 1.08997 * 109.68331 * 290.09264 * 14 12 10 28 28 H 1.08995 * 109.68448 * 50.61226 * 14 12 10 29 29 H 1.08993 * 109.25401 * 171.37983 * 15 14 12 30 30 H 1.09003 * 109.25037 * 290.80680 * 15 14 12 31 31 H 1.07995 * 119.73045 * 359.65085 * 17 16 15 32 32 H 1.08004 * 120.11689 * 180.32952 * 18 17 16 33 33 H 1.07996 * 120.11768 * 179.82068 * 19 18 17 34 34 H 1.08007 * 119.72880 * 180.18209 * 20 19 18 35 35 H 1.09001 * 109.25110 * 102.58603 * 22 21 16 36 36 H 1.08998 * 109.24865 * 222.04315 * 22 21 16 37 37 H 1.08995 * 115.54587 * 98.14995 * 23 9 7 38 38 H 1.08999 * 117.50028 * 0.02562 * 24 23 9 39 39 H 1.09004 * 117.49701 * 145.02136 * 24 23 9 40 40 H 1.09000 * 117.49385 * 214.98131 * 25 23 9 41 41 H 1.08996 * 117.50319 * 359.97438 * 25 23 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 2.5761 2.0000 -1.3969 5 1 1.4075 2.6746 0.6180 6 1 3.5031 1.4648 0.7791 7 6 2.0088 -1.2033 -0.0005 8 1 1.4854 -2.1292 0.1871 9 7 3.3589 -1.2153 -0.2392 10 6 4.1429 -2.1263 0.3706 11 8 3.6448 -2.9895 1.0619 12 6 5.6386 -2.0723 0.1936 13 1 5.8768 -1.7580 -0.8226 14 6 6.2412 -3.4567 0.4606 15 6 7.7100 -3.4314 0.0426 16 6 8.4180 -2.2570 0.6662 17 6 9.8063 -2.2837 0.7026 18 6 10.5135 -1.2328 1.2485 19 6 9.8355 -0.1488 1.7749 20 6 8.4568 -0.1217 1.7422 21 6 7.7429 -1.1767 1.1882 22 6 6.2394 -1.0848 1.1917 23 6 3.9492 -0.2379 -1.1570 24 6 3.2650 -0.0370 -2.5107 25 6 4.6044 -0.7723 -2.4322 26 1 -0.4850 0.8400 -0.0004 27 1 6.1656 -3.6914 1.5223 28 1 5.7065 -4.2081 -0.1204 29 1 8.1916 -4.3542 0.3657 30 1 7.7736 -3.3544 -1.0428 31 1 10.3366 -3.1321 0.2961 32 1 11.5930 -1.2583 1.2685 33 1 10.3835 0.6758 2.2063 34 1 7.9279 0.7266 2.1509 35 1 5.8678 -1.3125 2.1908 36 1 5.9407 -0.0726 0.9193 37 1 4.4013 0.6353 -0.6867 38 1 2.3754 -0.6317 -2.7181 39 1 3.2667 0.9687 -2.9311 40 1 5.4874 -0.2504 -2.8010 41 1 4.5967 -1.8510 -2.5880 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000577283249.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:26:07 Heat of formation + Delta-G solvation = 18.111317 kcal Electronic energy + Delta-G solvation = -22981.588592 eV Core-core repulsion = 19826.985528 eV Total energy + Delta-G solvation = -3154.603065 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 285.147 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -40.22575 -38.95122 -36.68808 -35.35064 -33.10476 -32.51279 -31.44164 -30.17667 -28.80587 -25.50030 -23.69311 -22.72615 -22.22748 -22.07454 -21.79297 -19.64313 -18.37448 -17.08882 -16.39132 -16.30508 -15.77237 -15.42506 -14.92644 -14.47436 -14.13881 -13.81899 -13.59493 -13.47164 -13.21449 -13.07715 -12.77523 -12.58115 -12.03818 -11.93679 -11.67359 -11.44587 -11.31970 -11.24167 -11.09494 -10.77712 -10.60653 -10.52108 -10.18985 -9.91419 -9.77753 -9.62813 -9.07224 -8.72031 -8.47982 -8.41072 -7.78819 -6.31461 -3.94261 1.39845 1.41350 3.08928 3.20618 3.24323 3.67479 3.79172 4.13686 4.25571 4.27997 4.74880 4.77555 4.97901 5.00403 5.06888 5.22867 5.26164 5.31178 5.34170 5.39636 5.46995 5.48628 5.65272 5.71945 5.75652 5.83769 5.95060 6.03059 6.05479 6.08198 6.12804 6.19313 6.29082 6.42146 6.45752 6.52313 6.57559 6.63527 6.72093 6.78216 7.06233 7.59639 8.27324 8.54536 8.97963 9.37847 9.79230 10.80607 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.022148 B = 0.005475 C = 0.005106 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1263.937762 B = 5112.602039 C = 5482.580824 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.876 5.876 2 C 0.064 3.936 3 Si 0.883 3.117 4 H -0.264 1.264 5 H -0.295 1.295 6 H -0.272 1.272 7 C -0.314 4.314 8 H 0.108 0.892 9 N -0.442 5.442 10 C 0.478 3.522 11 O -0.563 6.563 12 C -0.105 4.105 13 H 0.092 0.908 14 C -0.097 4.097 15 C -0.081 4.081 16 C -0.073 4.073 17 C -0.122 4.122 18 C -0.129 4.129 19 C -0.125 4.125 20 C -0.121 4.121 21 C -0.063 4.063 22 C -0.069 4.069 23 C 0.039 3.961 24 C -0.159 4.159 25 C -0.188 4.188 26 H 0.273 0.727 27 H 0.071 0.929 28 H 0.071 0.929 29 H 0.074 0.926 30 H 0.075 0.925 31 H 0.118 0.882 32 H 0.117 0.883 33 H 0.118 0.882 34 H 0.120 0.880 35 H 0.082 0.918 36 H 0.076 0.924 37 H 0.103 0.897 38 H 0.112 0.888 39 H 0.095 0.905 40 H 0.094 0.906 41 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.781 0.646 -2.498 18.957 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.514 5.514 2 C -0.141 4.141 3 Si 0.711 3.289 4 H -0.189 1.189 5 H -0.222 1.222 6 H -0.197 1.197 7 C -0.440 4.440 8 H 0.126 0.874 9 N -0.164 5.164 10 C 0.266 3.734 11 O -0.444 6.444 12 C -0.127 4.127 13 H 0.110 0.890 14 C -0.135 4.135 15 C -0.118 4.118 16 C -0.073 4.073 17 C -0.140 4.140 18 C -0.147 4.147 19 C -0.143 4.143 20 C -0.139 4.139 21 C -0.064 4.064 22 C -0.107 4.107 23 C -0.066 4.066 24 C -0.196 4.196 25 C -0.226 4.226 26 H 0.083 0.917 27 H 0.090 0.910 28 H 0.090 0.910 29 H 0.092 0.908 30 H 0.093 0.907 31 H 0.136 0.864 32 H 0.135 0.865 33 H 0.136 0.864 34 H 0.138 0.862 35 H 0.100 0.900 36 H 0.094 0.906 37 H 0.120 0.880 38 H 0.130 0.870 39 H 0.113 0.887 40 H 0.113 0.887 41 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 18.304 0.315 -2.147 18.432 hybrid contribution 0.386 1.216 0.029 1.276 sum 18.690 1.531 -2.118 18.871 Atomic orbital electron populations 1.69678 1.06062 1.27716 1.47915 1.25260 0.95137 0.98135 0.95580 0.86970 0.79519 0.83423 0.78980 1.18921 1.22232 1.19730 1.19118 0.80320 0.95976 1.48616 0.87400 1.43267 1.07326 1.28657 1.37128 1.20017 0.87381 0.84269 0.81688 1.90557 1.75607 1.36769 1.41470 1.21320 0.93864 0.96636 1.00854 0.89019 1.21341 0.93308 0.96142 1.02740 1.20538 0.95697 0.95427 1.00118 1.19690 0.93332 0.95622 0.98656 1.21129 0.93550 0.98801 1.00523 1.21001 0.99476 0.94448 0.99740 1.21010 0.94305 0.98473 1.00546 1.21187 0.94207 0.98470 1.00018 1.19688 0.95495 0.93655 0.97512 1.20363 0.90127 0.99797 1.00368 1.21882 1.02972 0.95901 0.85855 1.23254 0.96835 1.01576 0.97949 1.23366 0.96837 1.00905 1.01483 0.91717 0.90994 0.91043 0.90771 0.90672 0.86389 0.86468 0.86399 0.86231 0.89967 0.90597 0.87980 0.86987 0.88660 0.88749 0.88546 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.50 13.96 55.50 0.77 -24.73 16 2 C 0.06 1.75 5.19 -17.47 -0.09 1.66 16 3 Si 0.88 20.50 23.78 -169.99 -4.04 16.45 16 4 H -0.26 -5.52 5.40 56.52 0.31 -5.21 16 5 H -0.29 -7.01 7.11 56.52 0.40 -6.60 16 6 H -0.27 -6.18 6.51 56.52 0.37 -5.82 16 7 C -0.31 -8.84 9.13 -14.93 -0.14 -8.98 16 8 H 0.11 3.46 7.78 -52.49 -0.41 3.05 16 9 N -0.44 -10.60 2.64 -107.73 -0.28 -10.88 16 10 C 0.48 11.03 6.65 -10.98 -0.07 10.96 16 11 O -0.56 -15.17 16.06 5.55 0.09 -15.08 16 12 C -0.11 -1.84 1.88 -91.74 -0.17 -2.01 16 13 H 0.09 1.47 5.30 -51.93 -0.28 1.20 16 14 C -0.10 -1.52 4.67 -26.70 -0.12 -1.64 16 15 C -0.08 -0.99 5.67 -28.05 -0.16 -1.15 16 16 C -0.07 -0.96 5.74 -104.62 -0.60 -1.56 16 17 C -0.12 -1.38 9.61 -39.45 -0.38 -1.76 16 18 C -0.13 -1.37 10.05 -39.68 -0.40 -1.77 16 19 C -0.13 -1.40 10.05 -39.68 -0.40 -1.80 16 20 C -0.12 -1.55 9.61 -39.45 -0.38 -1.93 16 21 C -0.06 -0.90 5.74 -104.61 -0.60 -1.50 16 22 C -0.07 -1.13 4.97 -28.06 -0.14 -1.27 16 23 C 0.04 0.78 2.64 -67.93 -0.18 0.60 16 24 C -0.16 -2.91 7.87 -26.73 -0.21 -3.12 16 25 C -0.19 -2.98 8.31 -26.73 -0.22 -3.20 16 26 H 0.27 7.39 8.31 -40.82 -0.34 7.05 16 27 H 0.07 1.20 8.10 -51.93 -0.42 0.78 16 28 H 0.07 1.14 8.12 -51.93 -0.42 0.72 16 29 H 0.07 0.79 8.12 -51.93 -0.42 0.37 16 30 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 31 H 0.12 1.08 8.05 -52.49 -0.42 0.66 16 32 H 0.12 0.96 8.06 -52.48 -0.42 0.54 16 33 H 0.12 1.05 8.06 -52.49 -0.42 0.62 16 34 H 0.12 1.40 8.05 -52.48 -0.42 0.98 16 35 H 0.08 1.44 8.11 -51.93 -0.42 1.02 16 36 H 0.08 1.24 7.80 -51.93 -0.40 0.84 16 37 H 0.10 1.98 5.49 -51.93 -0.28 1.70 16 38 H 0.11 2.28 7.98 -51.93 -0.41 1.87 16 39 H 0.10 1.59 7.21 -51.93 -0.37 1.21 16 40 H 0.09 1.22 8.14 -51.93 -0.42 0.80 16 41 H 0.10 1.53 8.03 -51.93 -0.42 1.12 16 LS Contribution 322.06 15.07 4.85 4.85 Total: -1.00 -31.64 322.06 -8.94 -40.58 By element: Atomic # 1 Polarization: 13.37 SS G_CDS: -6.07 Total: 7.30 kcal Atomic # 6 Polarization: -14.23 SS G_CDS: -4.26 Total: -18.49 kcal Atomic # 7 Polarization: -36.10 SS G_CDS: 0.49 Total: -35.61 kcal Atomic # 8 Polarization: -15.17 SS G_CDS: 0.09 Total: -15.08 kcal Atomic # 14 Polarization: 20.50 SS G_CDS: -4.04 Total: 16.45 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -31.64 -8.94 -40.58 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000577283249.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.687 kcal (2) G-P(sol) polarization free energy of solvation -31.637 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.050 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.939 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.575 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.111 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds