Wall clock time and date at job start Tue Mar 31 2020 06:26:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31408 * 1 3 3 Si 1.86804 * 119.99904 * 2 1 4 4 H 1.48494 * 109.47299 * 266.19277 * 3 2 1 5 5 H 1.48503 * 109.46914 * 26.19481 * 3 2 1 6 6 H 1.48504 * 109.47144 * 146.19050 * 3 2 1 7 7 C 1.38948 * 120.00126 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99895 * 348.40153 * 7 2 1 9 9 N 1.37104 * 119.99973 * 168.40523 * 7 2 1 10 10 C 1.34774 * 119.99771 * 146.59160 * 9 7 2 11 11 O 1.21294 * 120.00161 * 4.78794 * 10 9 7 12 12 C 1.50705 * 119.99896 * 184.79283 * 10 9 7 13 13 H 1.09003 * 109.67892 * 323.78773 * 12 10 9 14 14 C 1.53325 * 109.71138 * 203.24897 * 12 10 9 15 15 C 1.52738 * 108.38096 * 170.37354 * 14 12 10 16 16 C 1.50631 * 110.58873 * 51.09018 * 15 14 12 17 17 C 1.38906 * 117.75315 * 162.46143 * 16 15 14 18 18 C 1.37931 * 120.54542 * 179.36609 * 17 16 15 19 19 C 1.38268 * 119.77350 * 0.58643 * 18 17 16 20 20 C 1.37931 * 119.76558 * 359.55260 * 19 18 17 21 21 C 1.37671 * 122.56587 * 342.29683 * 16 15 14 22 22 C 1.50632 * 122.56113 * 0.61439 * 21 16 15 23 23 C 1.46501 * 119.99900 * 326.58960 * 9 7 2 24 24 C 1.52998 * 117.49761 * 312.43732 * 23 9 7 25 25 C 1.53003 * 117.49401 * 243.81543 * 23 9 7 26 26 H 0.96999 * 120.00171 * 0.02562 * 1 2 3 27 27 H 1.08997 * 109.68331 * 290.09264 * 14 12 10 28 28 H 1.08995 * 109.68448 * 50.61226 * 14 12 10 29 29 H 1.08993 * 109.25401 * 171.37983 * 15 14 12 30 30 H 1.09003 * 109.25037 * 290.80680 * 15 14 12 31 31 H 1.07995 * 119.73045 * 359.65085 * 17 16 15 32 32 H 1.08004 * 120.11689 * 180.32952 * 18 17 16 33 33 H 1.07996 * 120.11768 * 179.82068 * 19 18 17 34 34 H 1.08007 * 119.72880 * 180.18209 * 20 19 18 35 35 H 1.09001 * 109.25110 * 102.58603 * 22 21 16 36 36 H 1.08998 * 109.24865 * 222.04315 * 22 21 16 37 37 H 1.08995 * 115.54587 * 98.14995 * 23 9 7 38 38 H 1.08999 * 117.50028 * 0.02562 * 24 23 9 39 39 H 1.09004 * 117.49701 * 145.02136 * 24 23 9 40 40 H 1.09000 * 117.49385 * 214.98131 * 25 23 9 41 41 H 1.08996 * 117.50319 * 359.97438 * 25 23 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 2.5761 2.0000 -1.3969 5 1 1.4075 2.6746 0.6180 6 1 3.5031 1.4648 0.7791 7 6 2.0088 -1.2033 -0.0005 8 1 1.4854 -2.1292 0.1871 9 7 3.3589 -1.2153 -0.2392 10 6 4.1429 -2.1263 0.3706 11 8 3.6448 -2.9895 1.0619 12 6 5.6386 -2.0723 0.1936 13 1 5.8768 -1.7580 -0.8226 14 6 6.2412 -3.4567 0.4606 15 6 7.7100 -3.4314 0.0426 16 6 8.4180 -2.2570 0.6662 17 6 9.8063 -2.2837 0.7026 18 6 10.5135 -1.2328 1.2485 19 6 9.8355 -0.1488 1.7749 20 6 8.4568 -0.1217 1.7422 21 6 7.7429 -1.1767 1.1882 22 6 6.2394 -1.0848 1.1917 23 6 3.9492 -0.2379 -1.1570 24 6 3.2650 -0.0370 -2.5107 25 6 4.6044 -0.7723 -2.4322 26 1 -0.4850 0.8400 -0.0004 27 1 6.1656 -3.6914 1.5223 28 1 5.7065 -4.2081 -0.1204 29 1 8.1916 -4.3542 0.3657 30 1 7.7736 -3.3544 -1.0428 31 1 10.3366 -3.1321 0.2961 32 1 11.5930 -1.2583 1.2685 33 1 10.3835 0.6758 2.2063 34 1 7.9279 0.7266 2.1509 35 1 5.8678 -1.3125 2.1908 36 1 5.9407 -0.0726 0.9193 37 1 4.4013 0.6353 -0.6867 38 1 2.3754 -0.6317 -2.7181 39 1 3.2667 0.9687 -2.9311 40 1 5.4874 -0.2504 -2.8010 41 1 4.5967 -1.8510 -2.5880 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000577283249.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:26:07 Heat of formation + Delta-G solvation = -0.754292 kcal Electronic energy + Delta-G solvation = -22982.406667 eV Core-core repulsion = 19826.985528 eV Total energy + Delta-G solvation = -3155.421139 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 285.147 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.55604 -40.31927 -38.29887 -36.63832 -35.04173 -33.64578 -33.29747 -31.28845 -29.86571 -27.34511 -25.00009 -24.07782 -23.60301 -23.26164 -22.99683 -21.01242 -19.87991 -18.97907 -17.94454 -17.56693 -17.28384 -16.59517 -16.33305 -15.71335 -15.40874 -15.32371 -15.12650 -14.86397 -14.65670 -14.41575 -14.11323 -13.83984 -13.42904 -13.39524 -13.10455 -12.95131 -12.79223 -12.42433 -12.34677 -12.24501 -12.01410 -11.80951 -11.68336 -11.37244 -11.29943 -11.23261 -11.01560 -10.25389 -9.76479 -9.59695 -9.40296 -8.46402 -6.15129 0.51046 0.53660 1.23603 1.31516 1.41248 1.87604 2.22264 2.57264 2.74943 2.90155 3.01805 3.58836 3.70699 3.81418 3.87157 4.00816 4.06029 4.09964 4.17050 4.21078 4.30004 4.41913 4.46778 4.58106 4.63680 4.72702 4.77264 4.80464 4.90283 4.94812 5.01262 5.08607 5.10906 5.20354 5.27811 5.29259 5.38405 5.56334 5.66084 5.68476 5.82595 5.99396 6.19622 6.56319 6.92017 7.32041 7.85743 8.70458 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.022148 B = 0.005475 C = 0.005106 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1263.937762 B = 5112.602039 C = 5482.580824 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.924 5.924 2 C 0.018 3.982 3 Si 0.948 3.052 4 H -0.216 1.216 5 H -0.301 1.301 6 H -0.264 1.264 7 C -0.330 4.330 8 H 0.042 0.958 9 N -0.451 5.451 10 C 0.468 3.532 11 O -0.618 6.618 12 C -0.090 4.090 13 H 0.115 0.885 14 C -0.096 4.096 15 C -0.071 4.071 16 C -0.085 4.085 17 C -0.122 4.122 18 C -0.124 4.124 19 C -0.126 4.126 20 C -0.133 4.133 21 C -0.085 4.085 22 C -0.062 4.062 23 C 0.004 3.996 24 C -0.167 4.167 25 C -0.147 4.147 26 H 0.278 0.722 27 H 0.049 0.951 28 H 0.061 0.939 29 H 0.095 0.905 30 H 0.095 0.905 31 H 0.144 0.856 32 H 0.147 0.853 33 H 0.142 0.858 34 H 0.122 0.878 35 H 0.055 0.945 36 H 0.074 0.926 37 H 0.118 0.882 38 H 0.079 0.921 39 H 0.124 0.876 40 H 0.143 0.857 41 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.789 2.669 -4.293 24.320 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.563 5.563 2 C -0.183 4.183 3 Si 0.772 3.228 4 H -0.138 1.138 5 H -0.229 1.229 6 H -0.189 1.189 7 C -0.458 4.458 8 H 0.060 0.940 9 N -0.172 5.172 10 C 0.258 3.742 11 O -0.503 6.503 12 C -0.111 4.111 13 H 0.133 0.867 14 C -0.134 4.134 15 C -0.108 4.108 16 C -0.085 4.085 17 C -0.140 4.140 18 C -0.142 4.142 19 C -0.144 4.144 20 C -0.151 4.151 21 C -0.085 4.085 22 C -0.100 4.100 23 C -0.100 4.100 24 C -0.204 4.204 25 C -0.184 4.184 26 H 0.087 0.913 27 H 0.068 0.932 28 H 0.080 0.920 29 H 0.113 0.887 30 H 0.113 0.887 31 H 0.162 0.838 32 H 0.165 0.835 33 H 0.160 0.840 34 H 0.140 0.860 35 H 0.073 0.927 36 H 0.093 0.907 37 H 0.136 0.864 38 H 0.098 0.902 39 H 0.142 0.858 40 H 0.161 0.839 41 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 23.334 2.337 -3.981 23.786 hybrid contribution -1.208 0.458 0.644 1.443 sum 22.126 2.795 -3.337 22.551 Atomic orbital electron populations 1.69821 1.08167 1.29126 1.49210 1.26078 0.95827 1.02057 0.94347 0.85955 0.77902 0.77323 0.81638 1.13839 1.22912 1.18940 1.18680 0.82703 0.94166 1.50213 0.94015 1.43314 1.05766 1.29724 1.38357 1.21174 0.89928 0.82787 0.80269 1.90513 1.77237 1.38916 1.43666 1.21262 0.88977 0.98406 1.02448 0.86748 1.21319 0.96063 0.94677 1.01375 1.20500 0.92578 0.96424 1.01277 1.19814 0.94417 0.95238 0.99013 1.21411 0.92679 0.99866 1.00068 1.21414 1.01074 0.93608 0.98115 1.21328 0.93616 0.99477 0.99999 1.21314 0.95246 0.98297 1.00225 1.19521 0.93703 0.95314 0.99978 1.20227 0.92307 0.99059 0.98380 1.22149 1.05383 0.96251 0.86208 1.23287 0.97173 1.03104 0.96832 1.23502 0.97110 1.01162 0.96669 0.91293 0.93173 0.92032 0.88673 0.88696 0.83826 0.83501 0.84038 0.85971 0.92686 0.90728 0.86445 0.90225 0.85838 0.83864 0.88850 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -56.61 13.96 21.66 0.30 -56.31 16 2 C 0.02 1.02 5.19 84.93 0.44 1.46 16 3 Si 0.95 42.04 23.78 68.60 1.63 43.67 16 4 H -0.22 -7.89 5.40 99.48 0.54 -7.35 16 5 H -0.30 -13.61 7.11 99.48 0.71 -12.90 16 6 H -0.26 -11.31 6.51 99.48 0.65 -10.67 16 7 C -0.33 -19.94 9.13 84.04 0.77 -19.17 16 8 H 0.04 2.99 7.78 -2.91 -0.02 2.97 16 9 N -0.45 -22.33 2.64 -613.12 -1.62 -23.95 16 10 C 0.47 22.64 6.65 87.66 0.58 23.23 16 11 O -0.62 -36.11 16.06 -3.07 -0.05 -36.16 16 12 C -0.09 -3.11 1.88 -11.52 -0.02 -3.14 16 13 H 0.11 3.40 5.30 -2.39 -0.01 3.39 16 14 C -0.10 -3.00 4.67 30.62 0.14 -2.86 16 15 C -0.07 -1.55 5.67 29.74 0.17 -1.38 16 16 C -0.08 -1.96 5.74 -19.86 -0.11 -2.07 16 17 C -0.12 -2.22 9.61 22.36 0.21 -2.00 16 18 C -0.12 -2.05 10.05 22.20 0.22 -1.83 16 19 C -0.13 -2.32 10.05 22.20 0.22 -2.10 16 20 C -0.13 -3.07 9.61 22.36 0.21 -2.86 16 21 C -0.09 -2.26 5.74 -19.86 -0.11 -2.37 16 22 C -0.06 -2.01 4.97 29.74 0.15 -1.87 16 23 C 0.00 0.15 2.64 44.99 0.12 0.26 16 24 C -0.17 -5.70 7.87 30.59 0.24 -5.46 16 25 C -0.15 -4.10 8.31 30.60 0.25 -3.85 16 26 H 0.28 15.65 8.31 -92.71 -0.77 14.88 16 27 H 0.05 1.75 8.10 -2.39 -0.02 1.73 16 28 H 0.06 2.00 8.12 -2.39 -0.02 1.98 16 29 H 0.09 1.70 8.12 -2.39 -0.02 1.68 16 30 H 0.09 1.72 8.14 -2.39 -0.02 1.70 16 31 H 0.14 1.84 8.05 -2.91 -0.02 1.81 16 32 H 0.15 1.55 8.06 -2.91 -0.02 1.53 16 33 H 0.14 1.88 8.06 -2.91 -0.02 1.86 16 34 H 0.12 2.64 8.05 -2.91 -0.02 2.62 16 35 H 0.05 2.02 8.11 -2.39 -0.02 2.00 16 36 H 0.07 2.37 7.80 -2.39 -0.02 2.35 16 37 H 0.12 4.13 5.49 -2.39 -0.01 4.11 16 38 H 0.08 3.26 7.98 -2.39 -0.02 3.24 16 39 H 0.12 3.51 7.21 -2.39 -0.02 3.50 16 40 H 0.14 2.72 8.14 -2.39 -0.02 2.70 16 41 H 0.09 2.71 8.03 -2.39 -0.02 2.69 16 Total: -1.00 -77.46 322.06 4.54 -72.91 By element: Atomic # 1 Polarization: 25.04 SS G_CDS: 0.79 Total: 25.83 kcal Atomic # 6 Polarization: -29.48 SS G_CDS: 3.49 Total: -25.99 kcal Atomic # 7 Polarization: -78.95 SS G_CDS: -1.32 Total: -80.26 kcal Atomic # 8 Polarization: -36.11 SS G_CDS: -0.05 Total: -36.16 kcal Atomic # 14 Polarization: 42.04 SS G_CDS: 1.63 Total: 43.67 kcal Total: -77.46 4.54 -72.91 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000577283249.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.157 kcal (2) G-P(sol) polarization free energy of solvation -77.455 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.298 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.544 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.911 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.754 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds