Wall clock time and date at job start Tue Mar 31 2020 05:49:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.47149 * 2 1 4 4 H 1.09007 * 109.46970 * 175.06943 * 3 2 1 5 5 C 1.50698 * 109.47244 * 55.06375 * 3 2 1 6 6 H 1.07994 * 120.00318 * 245.69570 * 5 3 2 7 7 C 1.37877 * 119.99731 * 65.70266 * 5 3 2 8 8 N 1.31517 * 120.00586 * 5.49303 * 7 5 3 9 9 Si 1.86807 * 119.99799 * 185.49906 * 7 5 3 10 10 H 1.48505 * 109.46889 * 179.97438 * 9 7 5 11 11 H 1.48497 * 109.46842 * 299.99335 * 9 7 5 12 12 H 1.48489 * 109.47327 * 59.99605 * 9 7 5 13 13 N 1.46902 * 109.46840 * 295.06538 * 3 2 1 14 14 C 1.46900 * 111.00077 * 279.83057 * 13 3 2 15 15 C 1.50698 * 109.47092 * 185.02718 * 14 13 3 16 16 C 1.40013 * 120.31835 * 89.99956 * 15 14 13 17 17 N 1.31461 * 120.13452 * 179.97438 * 16 15 14 18 18 C 1.33409 * 120.85807 * 359.97438 * 17 16 15 19 19 C 1.40742 * 132.51151 * 179.97438 * 18 17 16 20 20 C 1.43203 * 126.52124 * 359.97438 * 19 18 17 21 21 N 9.66089 * 106.72902 * 119.00338 * 3 1 2 22 22 C 1.40561 * 106.95784 * 180.02562 * 19 18 17 23 23 N 1.30779 * 108.75300 * 359.97438 * 22 19 18 24 24 N 1.36722 * 120.77077 * 359.97438 * 18 17 16 25 25 C 1.35714 * 120.30996 * 269.71466 * 15 14 13 26 26 H 1.09003 * 109.46806 * 305.01089 * 1 2 3 27 27 H 1.09000 * 109.46735 * 65.00993 * 1 2 3 28 28 H 1.08993 * 109.47295 * 185.01354 * 1 2 3 29 29 H 1.09002 * 109.47190 * 239.99669 * 2 1 3 30 30 H 1.09002 * 109.46673 * 119.99518 * 2 1 3 31 31 H 0.96999 * 119.99483 * 355.15084 * 8 7 5 32 32 H 1.00901 * 110.99934 * 43.78184 * 13 3 2 33 33 H 1.09006 * 109.46987 * 305.02572 * 14 13 3 34 34 H 1.09004 * 109.47087 * 65.01912 * 14 13 3 35 35 H 1.08005 * 119.92755 * 359.97438 * 16 15 14 36 36 H 1.08003 * 125.61781 * 179.97438 * 22 19 18 37 37 H 1.07995 * 120.43233 * 0.02562 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1265 1.4437 0.0883 5 6 1.4404 2.1873 1.1647 6 1 0.7570 3.0048 0.9888 7 6 1.7644 1.8252 2.4550 8 7 2.6774 0.9033 2.6698 9 14 0.9064 2.6439 3.8983 10 1 1.4298 2.0815 5.1692 11 1 1.1620 4.1063 3.8613 12 1 -0.5548 2.3944 3.8119 13 7 1.6500 2.0997 -1.2546 14 6 2.5595 1.7301 -2.3474 15 6 2.2047 2.5155 -3.5836 16 6 2.7999 3.7595 -3.8257 17 7 2.4880 4.4413 -4.9055 18 6 1.6055 3.9643 -5.7850 19 6 1.0994 4.4729 -6.9958 20 6 1.4460 5.7207 -7.6071 21 7 1.7206 6.7108 -8.0917 22 6 0.1882 3.5237 -7.4902 23 7 0.1368 2.5167 -6.6574 24 7 1.0035 2.7532 -5.5849 25 6 1.3094 2.0210 -4.4757 26 1 -0.3633 0.5896 0.8417 27 1 -0.3633 0.4342 -0.9315 28 1 -0.3633 -1.0237 0.0898 29 1 1.8934 -0.5139 -0.8900 30 1 1.8933 -0.5138 0.8901 31 1 3.0722 0.4283 1.9219 32 1 0.6931 1.8857 -1.4926 33 1 3.5861 1.9537 -2.0570 34 1 2.4645 0.6641 -2.5543 35 1 3.5166 4.1596 -3.1238 36 1 -0.3763 3.6117 -8.4067 37 1 0.8432 1.0614 -4.3081 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000579355044.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:49:39 Heat of formation + Delta-G solvation = 142.513738 kcal Electronic energy + Delta-G solvation = -21165.699416 eV Core-core repulsion = 17945.243252 eV Total energy + Delta-G solvation = -3220.456163 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 285.128 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -42.76054 -38.86594 -37.02216 -36.43019 -34.56422 -33.38528 -31.65160 -30.42638 -29.74358 -26.63491 -25.31691 -24.63773 -23.75542 -23.12425 -22.02120 -19.74866 -19.37157 -17.99021 -17.45264 -16.95518 -16.50967 -15.74223 -15.10516 -14.53486 -14.26947 -13.96609 -13.72195 -13.63673 -13.51388 -13.32066 -13.08293 -12.95245 -12.67357 -12.56846 -12.17746 -11.87620 -11.52228 -11.35945 -11.22836 -10.85108 -10.47978 -10.30361 -10.18224 -10.10866 -10.04683 -9.79727 -8.80691 -8.37368 -8.27607 -7.65071 -6.41883 -4.13613 0.09165 0.49588 1.56555 1.81534 2.63719 2.89212 3.39530 3.40458 3.45626 3.54086 3.58966 3.61822 4.11293 4.26109 4.41701 4.48818 4.57083 4.85576 5.04684 5.07757 5.19267 5.29499 5.58756 5.67218 5.75930 5.82467 5.91522 5.96608 6.04811 6.14299 6.47491 6.75313 6.83140 6.95310 7.04413 7.15325 7.24293 7.59952 7.63427 8.00871 8.18866 8.48046 8.78832 9.54574 10.94309 Molecular weight = 285.13amu Principal moments of inertia in cm(-1) A = 0.026965 B = 0.003376 C = 0.003214 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1038.152937 B = 8292.621924 C = 8710.038508 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.155 4.155 3 C 0.205 3.795 4 H 0.031 0.969 5 C -0.575 4.575 6 H 0.056 0.944 7 C 0.020 3.980 8 N -0.914 5.914 9 Si 1.065 2.935 10 H -0.284 1.284 11 H -0.288 1.288 12 H -0.288 1.288 13 N -0.672 5.672 14 C 0.104 3.896 15 C -0.157 4.157 16 C 0.226 3.774 17 N -0.473 5.473 18 C 0.319 3.681 19 C -0.204 4.204 20 C 0.306 3.694 21 N -0.439 5.439 22 C 0.147 3.853 23 N -0.309 5.309 24 N -0.298 5.298 25 C 0.166 3.834 26 H 0.074 0.926 27 H 0.031 0.969 28 H 0.029 0.971 29 H 0.022 0.978 30 H 0.069 0.931 31 H 0.269 0.731 32 H 0.331 0.669 33 H 0.092 0.908 34 H 0.041 0.959 35 H 0.191 0.809 36 H 0.209 0.791 37 H 0.184 0.816 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.603 -1.314 -14.406 14.698 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.195 4.195 3 C 0.097 3.903 4 H 0.049 0.951 5 C -0.614 4.614 6 H 0.074 0.926 7 C -0.184 4.184 8 N -0.551 5.551 9 Si 0.894 3.106 10 H -0.209 1.209 11 H -0.214 1.214 12 H -0.215 1.215 13 N -0.303 5.303 14 C -0.026 4.026 15 C -0.163 4.163 16 C 0.045 3.955 17 N -0.184 5.184 18 C 0.084 3.916 19 C -0.222 4.222 20 C -0.009 4.009 21 N -0.117 5.117 22 C -0.036 4.036 23 N -0.130 5.130 24 N -0.064 5.064 25 C 0.030 3.970 26 H 0.093 0.907 27 H 0.050 0.950 28 H 0.048 0.952 29 H 0.041 0.959 30 H 0.088 0.912 31 H 0.081 0.919 32 H 0.149 0.851 33 H 0.110 0.890 34 H 0.059 0.941 35 H 0.208 0.792 36 H 0.225 0.775 37 H 0.201 0.799 Dipole moment (debyes) X Y Z Total from point charges -2.201 0.548 -13.527 13.716 hybrid contribution -0.412 -1.517 -1.580 2.228 sum -2.613 -0.969 -15.107 15.362 Atomic orbital electron populations 1.21603 0.96678 0.99334 1.01386 1.22295 0.96252 1.01257 0.99681 1.19386 0.95944 0.88437 0.86487 0.95094 1.21770 1.30359 1.18295 0.90930 0.92578 1.25703 0.95659 0.96970 1.00023 1.70838 1.24364 1.24290 1.35614 0.83576 0.75561 0.75692 0.75784 1.20931 1.21419 1.21506 1.60876 1.04799 1.62510 1.02097 1.20799 0.99581 0.94977 0.87289 1.20825 0.98840 0.98273 0.98392 1.23687 0.92790 0.88395 0.90611 1.68290 1.13704 1.32803 1.03564 1.20408 0.91833 0.84495 0.94904 1.15008 1.13029 0.96072 0.98054 1.24055 0.92826 0.91166 0.92822 1.81243 1.09755 1.10971 1.09704 1.24013 0.93505 0.88223 0.97866 1.77695 1.14424 1.24032 0.96848 1.46860 1.28471 1.14655 1.16412 1.22094 0.94912 0.97513 0.82493 0.90734 0.95031 0.95188 0.95941 0.91242 0.91919 0.85076 0.89020 0.94129 0.79234 0.77463 0.79863 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.39 9.38 37.16 0.35 -2.04 16 2 C -0.15 -3.01 5.45 -26.73 -0.15 -3.15 16 3 C 0.21 4.28 1.95 -68.86 -0.13 4.14 16 4 H 0.03 0.71 7.32 -51.93 -0.38 0.33 16 5 C -0.57 -14.18 7.18 -34.44 -0.25 -14.42 16 6 H 0.06 1.43 7.82 -52.49 -0.41 1.02 16 7 C 0.02 0.53 5.29 -17.82 -0.09 0.44 16 8 N -0.91 -25.05 13.21 55.43 0.73 -24.32 16 9 Si 1.07 23.54 29.91 -169.99 -5.08 18.46 16 10 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 11 H -0.29 -6.19 7.11 56.52 0.40 -5.79 16 12 H -0.29 -6.11 7.11 56.52 0.40 -5.71 16 13 N -0.67 -11.21 6.18 -109.21 -0.67 -11.88 16 14 C 0.10 1.29 5.62 -4.98 -0.03 1.26 16 15 C -0.16 -1.68 5.42 -104.86 -0.57 -2.25 16 16 C 0.23 2.51 10.97 -17.05 -0.19 2.32 16 17 N -0.47 -6.19 10.47 -11.97 -0.13 -6.32 16 18 C 0.32 4.12 7.88 -155.71 -1.23 2.89 16 19 C -0.20 -2.42 6.03 -106.15 -0.64 -3.06 16 20 C 0.31 4.08 15.84 -22.47 -0.36 3.72 16 21 N -0.44 -6.65 18.54 41.84 0.78 -5.88 16 22 C 0.15 1.36 11.93 -17.12 -0.20 1.16 16 23 N -0.31 -3.44 12.58 30.76 0.39 -3.05 16 24 N -0.30 -3.49 3.87 -11.95 -0.05 -3.54 16 25 C 0.17 1.69 10.94 -16.43 -0.18 1.51 16 26 H 0.07 1.54 6.88 -51.93 -0.36 1.18 16 27 H 0.03 0.49 6.68 -51.93 -0.35 0.15 16 28 H 0.03 0.49 8.14 -51.93 -0.42 0.06 16 29 H 0.02 0.38 7.13 -51.93 -0.37 0.01 16 30 H 0.07 1.54 6.17 -51.93 -0.32 1.22 16 31 H 0.27 7.20 5.62 -40.82 -0.23 6.98 16 32 H 0.33 5.34 6.79 -39.29 -0.27 5.07 16 33 H 0.09 1.11 7.91 -51.93 -0.41 0.70 16 34 H 0.04 0.46 7.14 -51.93 -0.37 0.09 16 35 H 0.19 1.71 8.06 -52.48 -0.42 1.29 16 36 H 0.21 1.00 8.06 -52.48 -0.42 0.58 16 37 H 0.18 1.43 8.06 -52.49 -0.42 1.01 16 LS Contribution 321.72 15.07 4.85 4.85 Total: -1.00 -30.18 321.72 -6.80 -36.98 By element: Atomic # 1 Polarization: 6.15 SS G_CDS: -3.95 Total: 2.20 kcal Atomic # 6 Polarization: -3.82 SS G_CDS: -3.66 Total: -7.49 kcal Atomic # 7 Polarization: -56.04 SS G_CDS: 1.05 Total: -55.00 kcal Atomic # 14 Polarization: 23.54 SS G_CDS: -5.08 Total: 18.46 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -30.18 -6.80 -36.98 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000579355044.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 179.492 kcal (2) G-P(sol) polarization free energy of solvation -30.178 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 149.314 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.800 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.978 kcal (6) G-S(sol) free energy of system = (1) + (5) 142.514 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds