Wall clock time and date at job start Tue Mar 31 2020 05:49:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.47149 * 2 1 4 4 H 1.09007 * 109.46970 * 175.06943 * 3 2 1 5 5 C 1.50698 * 109.47244 * 55.06375 * 3 2 1 6 6 H 1.07994 * 120.00318 * 245.69570 * 5 3 2 7 7 C 1.37877 * 119.99731 * 65.70266 * 5 3 2 8 8 N 1.31517 * 120.00586 * 5.49303 * 7 5 3 9 9 Si 1.86807 * 119.99799 * 185.49906 * 7 5 3 10 10 H 1.48505 * 109.46889 * 179.97438 * 9 7 5 11 11 H 1.48497 * 109.46842 * 299.99335 * 9 7 5 12 12 H 1.48489 * 109.47327 * 59.99605 * 9 7 5 13 13 N 1.46902 * 109.46840 * 295.06538 * 3 2 1 14 14 C 1.46900 * 111.00077 * 279.83057 * 13 3 2 15 15 C 1.50698 * 109.47092 * 185.02718 * 14 13 3 16 16 C 1.40013 * 120.31835 * 89.99956 * 15 14 13 17 17 N 1.31461 * 120.13452 * 179.97438 * 16 15 14 18 18 C 1.33409 * 120.85807 * 359.97438 * 17 16 15 19 19 C 1.40742 * 132.51151 * 179.97438 * 18 17 16 20 20 C 1.43203 * 126.52124 * 359.97438 * 19 18 17 21 21 N 9.66089 * 106.72902 * 119.00338 * 3 1 2 22 22 C 1.40561 * 106.95784 * 180.02562 * 19 18 17 23 23 N 1.30779 * 108.75300 * 359.97438 * 22 19 18 24 24 N 1.36722 * 120.77077 * 359.97438 * 18 17 16 25 25 C 1.35714 * 120.30996 * 269.71466 * 15 14 13 26 26 H 1.09003 * 109.46806 * 305.01089 * 1 2 3 27 27 H 1.09000 * 109.46735 * 65.00993 * 1 2 3 28 28 H 1.08993 * 109.47295 * 185.01354 * 1 2 3 29 29 H 1.09002 * 109.47190 * 239.99669 * 2 1 3 30 30 H 1.09002 * 109.46673 * 119.99518 * 2 1 3 31 31 H 0.96999 * 119.99483 * 355.15084 * 8 7 5 32 32 H 1.00901 * 110.99934 * 43.78184 * 13 3 2 33 33 H 1.09006 * 109.46987 * 305.02572 * 14 13 3 34 34 H 1.09004 * 109.47087 * 65.01912 * 14 13 3 35 35 H 1.08005 * 119.92755 * 359.97438 * 16 15 14 36 36 H 1.08003 * 125.61781 * 179.97438 * 22 19 18 37 37 H 1.07995 * 120.43233 * 0.02562 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1265 1.4437 0.0883 5 6 1.4404 2.1873 1.1647 6 1 0.7570 3.0048 0.9888 7 6 1.7644 1.8252 2.4550 8 7 2.6774 0.9033 2.6698 9 14 0.9064 2.6439 3.8983 10 1 1.4298 2.0815 5.1692 11 1 1.1620 4.1063 3.8613 12 1 -0.5548 2.3944 3.8119 13 7 1.6500 2.0997 -1.2546 14 6 2.5595 1.7301 -2.3474 15 6 2.2047 2.5155 -3.5836 16 6 2.7999 3.7595 -3.8257 17 7 2.4880 4.4413 -4.9055 18 6 1.6055 3.9643 -5.7850 19 6 1.0994 4.4729 -6.9958 20 6 1.4460 5.7207 -7.6071 21 7 1.7206 6.7108 -8.0917 22 6 0.1882 3.5237 -7.4902 23 7 0.1368 2.5167 -6.6574 24 7 1.0035 2.7532 -5.5849 25 6 1.3094 2.0210 -4.4757 26 1 -0.3633 0.5896 0.8417 27 1 -0.3633 0.4342 -0.9315 28 1 -0.3633 -1.0237 0.0898 29 1 1.8934 -0.5139 -0.8900 30 1 1.8933 -0.5138 0.8901 31 1 3.0722 0.4283 1.9219 32 1 0.6931 1.8857 -1.4926 33 1 3.5861 1.9537 -2.0570 34 1 2.4645 0.6641 -2.5543 35 1 3.5166 4.1596 -3.1238 36 1 -0.3763 3.6117 -8.4067 37 1 0.8432 1.0614 -4.3081 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000579355044.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:49:38 Heat of formation + Delta-G solvation = 123.783019 kcal Electronic energy + Delta-G solvation = -21166.511640 eV Core-core repulsion = 17945.243252 eV Total energy + Delta-G solvation = -3221.268388 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 285.128 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -43.61664 -39.79027 -38.43211 -37.48554 -35.64054 -34.63502 -33.13644 -31.56541 -30.76668 -28.06231 -26.38345 -25.81625 -25.34362 -24.08014 -22.92662 -21.34595 -20.27354 -18.99425 -18.76689 -18.15430 -17.40153 -16.84361 -16.21903 -15.86103 -15.51702 -15.19435 -15.09863 -14.78546 -14.60266 -14.37852 -14.29377 -14.15159 -13.82336 -13.60183 -13.48237 -13.25347 -12.90013 -12.58285 -12.45716 -12.22279 -11.99091 -11.90761 -11.86008 -11.60567 -11.04598 -10.71553 -10.56679 -10.29179 -9.20271 -8.98959 -8.42543 -6.13865 -0.75327 -0.38064 0.73382 1.00336 1.59966 1.62875 1.64478 1.83145 1.98824 2.56226 2.62908 2.64039 2.76584 3.29631 3.32453 3.36615 3.53525 3.73272 3.86196 4.07487 4.27472 4.34424 4.41429 4.43337 4.59293 4.70033 4.74318 4.91170 5.00457 5.01396 5.19332 5.26383 5.29530 5.48729 5.63912 6.00631 6.13883 6.28983 6.36962 6.59136 6.60493 6.75831 6.86591 7.60340 8.94825 Molecular weight = 285.13amu Principal moments of inertia in cm(-1) A = 0.026965 B = 0.003376 C = 0.003214 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1038.152937 B = 8292.621924 C = 8710.038508 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.148 4.148 3 C 0.211 3.789 4 H 0.007 0.993 5 C -0.574 4.574 6 H 0.044 0.956 7 C -0.025 4.025 8 N -0.945 5.945 9 Si 1.100 2.900 10 H -0.292 1.292 11 H -0.279 1.279 12 H -0.274 1.274 13 N -0.680 5.680 14 C 0.112 3.888 15 C -0.159 4.159 16 C 0.227 3.773 17 N -0.501 5.501 18 C 0.306 3.694 19 C -0.222 4.222 20 C 0.324 3.676 21 N -0.480 5.480 22 C 0.170 3.830 23 N -0.320 5.320 24 N -0.304 5.304 25 C 0.179 3.821 26 H 0.042 0.958 27 H 0.058 0.942 28 H 0.045 0.955 29 H 0.052 0.948 30 H 0.035 0.965 31 H 0.263 0.737 32 H 0.336 0.664 33 H 0.091 0.909 34 H 0.060 0.940 35 H 0.204 0.796 36 H 0.251 0.749 37 H 0.213 0.787 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.894 -2.114 -15.883 16.489 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.187 4.187 3 C 0.102 3.898 4 H 0.024 0.976 5 C -0.613 4.613 6 H 0.062 0.938 7 C -0.224 4.224 8 N -0.584 5.584 9 Si 0.925 3.075 10 H -0.218 1.218 11 H -0.205 1.205 12 H -0.200 1.200 13 N -0.311 5.311 14 C -0.019 4.019 15 C -0.165 4.165 16 C 0.048 3.952 17 N -0.213 5.213 18 C 0.070 3.930 19 C -0.240 4.240 20 C 0.010 3.990 21 N -0.158 5.158 22 C -0.014 4.014 23 N -0.140 5.140 24 N -0.070 5.070 25 C 0.043 3.957 26 H 0.061 0.939 27 H 0.076 0.924 28 H 0.065 0.935 29 H 0.071 0.929 30 H 0.054 0.946 31 H 0.074 0.926 32 H 0.155 0.845 33 H 0.109 0.891 34 H 0.078 0.922 35 H 0.220 0.780 36 H 0.267 0.733 37 H 0.229 0.771 Dipole moment (debyes) X Y Z Total from point charges -3.498 -0.250 -15.021 15.425 hybrid contribution -0.019 -1.285 -1.201 1.759 sum -3.517 -1.535 -16.222 16.669 Atomic orbital electron populations 1.21523 0.95453 1.00054 1.01414 1.22151 0.97247 0.99901 0.99450 1.19092 0.94085 0.89224 0.87426 0.97557 1.22084 1.29241 1.17616 0.92336 0.93807 1.26701 0.95856 0.97174 1.02641 1.70917 1.26111 1.25861 1.35503 0.83108 0.75594 0.75412 0.73375 1.21777 1.20475 1.19976 1.60644 1.05809 1.62584 1.02061 1.20728 0.98559 0.96249 0.86322 1.20527 0.99745 0.98090 0.98151 1.23962 0.92598 0.88449 0.90214 1.68314 1.14791 1.33777 1.04467 1.20627 0.92001 0.85184 0.95215 1.15180 1.14324 0.96116 0.98345 1.24239 0.91770 0.91059 0.91912 1.81252 1.11217 1.12168 1.11155 1.24684 0.92032 0.86318 0.98323 1.77705 1.14612 1.24749 0.96983 1.47003 1.28591 1.14418 1.16941 1.22518 0.93720 0.97970 0.81458 0.93874 0.92353 0.93549 0.92940 0.94612 0.92610 0.84503 0.89059 0.92201 0.77954 0.73299 0.77079 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.33 9.38 71.98 0.68 -3.65 16 2 C -0.15 -5.54 5.45 30.59 0.17 -5.37 16 3 C 0.21 8.66 1.95 44.17 0.09 8.74 16 4 H 0.01 0.30 7.32 -2.38 -0.02 0.28 16 5 C -0.57 -28.36 7.18 25.60 0.18 -28.17 16 6 H 0.04 2.23 7.82 -2.91 -0.02 2.21 16 7 C -0.03 -1.31 5.29 84.65 0.45 -0.86 16 8 N -0.94 -52.80 13.21 21.45 0.28 -52.52 16 9 Si 1.10 47.66 29.91 68.60 2.05 49.72 16 10 H -0.29 -12.94 7.11 99.48 0.71 -12.23 16 11 H -0.28 -11.56 7.11 99.48 0.71 -10.86 16 12 H -0.27 -11.11 7.11 99.48 0.71 -10.41 16 13 N -0.68 -21.45 6.18 -499.44 -3.09 -24.53 16 14 C 0.11 2.48 5.62 85.56 0.48 2.96 16 15 C -0.16 -3.03 5.42 -20.02 -0.11 -3.13 16 16 C 0.23 4.74 10.97 85.18 0.93 5.68 16 17 N -0.50 -12.67 10.47 -191.79 -2.01 -14.67 16 18 C 0.31 7.41 7.88 133.92 1.06 8.47 16 19 C -0.22 -4.88 6.03 -20.85 -0.13 -5.01 16 20 C 0.32 8.36 15.84 88.33 1.40 9.76 16 21 N -0.48 -14.40 18.54 19.01 0.35 -14.05 16 22 C 0.17 2.63 11.93 85.42 1.02 3.65 16 23 N -0.32 -6.14 12.58 -56.59 -0.71 -6.85 16 24 N -0.30 -6.35 3.87 -191.71 -0.74 -7.09 16 25 C 0.18 3.10 10.94 83.40 0.91 4.01 16 26 H 0.04 1.73 6.88 -2.39 -0.02 1.72 16 27 H 0.06 1.65 6.68 -2.39 -0.02 1.63 16 28 H 0.05 1.41 8.14 -2.39 -0.02 1.39 16 29 H 0.05 1.63 7.13 -2.39 -0.02 1.61 16 30 H 0.04 1.58 6.17 -2.39 -0.01 1.57 16 31 H 0.26 14.47 5.62 -92.71 -0.52 13.95 16 32 H 0.34 9.94 6.79 -89.69 -0.61 9.33 16 33 H 0.09 2.06 7.91 -2.38 -0.02 2.05 16 34 H 0.06 1.14 7.14 -2.38 -0.02 1.12 16 35 H 0.20 3.46 8.06 -2.91 -0.02 3.44 16 36 H 0.25 1.37 8.06 -2.91 -0.02 1.35 16 37 H 0.21 2.36 8.06 -2.91 -0.02 2.34 16 Total: -1.00 -66.48 321.72 4.03 -62.46 By element: Atomic # 1 Polarization: 9.72 SS G_CDS: 0.76 Total: 10.48 kcal Atomic # 6 Polarization: -10.06 SS G_CDS: 7.13 Total: -2.93 kcal Atomic # 7 Polarization: -113.81 SS G_CDS: -5.91 Total: -119.72 kcal Atomic # 14 Polarization: 47.66 SS G_CDS: 2.05 Total: 49.72 kcal Total: -66.48 4.03 -62.46 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000579355044.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 186.239 kcal (2) G-P(sol) polarization free energy of solvation -66.484 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 119.755 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.028 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.456 kcal (6) G-S(sol) free energy of system = (1) + (5) 123.783 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds