Wall clock time and date at job start Tue Mar 31 2020 05:49:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52998 * 109.47175 * 2 1 4 4 H 1.08996 * 109.47148 * 185.16203 * 3 2 1 5 5 C 1.50707 * 109.47152 * 305.15980 * 3 2 1 6 6 H 1.07997 * 119.99602 * 119.99662 * 5 3 2 7 7 C 1.37873 * 119.99744 * 300.00014 * 5 3 2 8 8 N 1.31514 * 120.00335 * 0.02562 * 7 5 3 9 9 Si 1.86806 * 119.99850 * 179.97438 * 7 5 3 10 10 H 1.48501 * 109.46730 * 89.99790 * 9 7 5 11 11 H 1.48491 * 109.47169 * 210.00066 * 9 7 5 12 12 H 1.48496 * 109.46810 * 330.00448 * 9 7 5 13 13 N 1.46893 * 109.47256 * 65.16083 * 3 2 1 14 14 C 1.46901 * 111.00461 * 85.89750 * 13 3 2 15 15 C 1.50695 * 109.47564 * 174.80509 * 14 13 3 16 16 C 1.40009 * 120.31600 * 269.72331 * 15 14 13 17 17 N 1.31472 * 120.13405 * 179.71582 * 16 15 14 18 18 C 1.33407 * 120.85036 * 0.60241 * 17 16 15 19 19 C 1.40745 * 132.50475 * 179.69843 * 18 17 16 20 20 C 1.43208 * 126.51798 * 359.94068 * 19 18 17 21 21 N 9.66054 * 107.12574 * 239.64571 * 3 1 2 22 22 C 1.40557 * 106.96100 * 179.97438 * 19 18 17 23 23 N 1.30784 * 108.75146 * 0.02562 * 22 19 18 24 24 N 1.36719 * 120.77622 * 359.65618 * 18 17 16 25 25 C 1.35719 * 120.31279 * 90.00035 * 15 14 13 26 26 H 1.08998 * 109.46689 * 294.84894 * 1 2 3 27 27 H 1.08999 * 109.46732 * 174.84644 * 1 2 3 28 28 H 1.09001 * 109.47024 * 54.84947 * 1 2 3 29 29 H 1.08994 * 109.46865 * 120.00148 * 2 1 3 30 30 H 1.09002 * 109.46795 * 239.99681 * 2 1 3 31 31 H 0.97001 * 119.99939 * 179.97438 * 8 7 5 32 32 H 1.00910 * 110.99997 * 321.94761 * 13 3 2 33 33 H 1.08998 * 109.46976 * 294.81261 * 14 13 3 34 34 H 1.09004 * 109.46501 * 54.80632 * 14 13 3 35 35 H 1.08004 * 119.93413 * 0.02562 * 16 15 14 36 36 H 1.07997 * 125.62697 * 179.97438 * 22 19 18 37 37 H 1.08002 * 120.42649 * 359.96259 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 3.1261 1.4439 -0.0925 5 6 1.4361 2.1889 -1.1616 6 1 0.8269 3.0627 -0.9839 7 6 1.6612 1.7559 -2.4511 8 7 2.4026 0.6914 -2.6675 9 14 0.9120 2.6807 -3.8910 10 1 1.8533 3.7356 -4.3453 11 1 0.6530 1.7347 -5.0059 12 1 -0.3656 3.3069 -3.4661 13 7 1.6548 2.0981 1.2568 14 6 2.6433 1.8367 2.3116 15 6 2.2834 2.6256 3.5441 16 6 2.7878 3.9187 3.7277 17 7 2.4671 4.6060 4.8016 18 6 1.6705 4.0836 5.7355 19 6 1.1823 4.5836 6.9572 20 6 1.4539 5.8721 7.5201 21 7 1.6693 6.8942 7.9666 22 6 0.3780 3.5776 7.5199 23 7 0.3710 2.5461 6.7160 24 7 1.1620 2.8222 5.5955 25 6 1.4718 2.0873 4.4893 26 1 -0.3632 0.4319 0.9325 27 1 -0.3633 -1.0235 -0.0923 28 1 -0.3633 0.5917 -0.8403 29 1 1.8933 -0.5138 0.8899 30 1 1.8933 -0.5139 -0.8900 31 1 2.5606 0.3867 -3.5747 32 1 0.7321 1.8104 1.5467 33 1 2.6480 0.7730 2.5495 34 1 3.6324 2.1357 1.9647 35 1 3.4377 4.3545 2.9832 36 1 -0.1468 3.6449 8.4614 37 1 1.0762 1.0898 4.3669 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000579355046.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:49:41 Heat of formation + Delta-G solvation = 127.725035 kcal Electronic energy + Delta-G solvation = -21125.272373 eV Core-core repulsion = 17904.174923 eV Total energy + Delta-G solvation = -3221.097450 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 285.128 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -43.57090 -39.70688 -38.15407 -37.45725 -35.50991 -34.51587 -33.14562 -31.47008 -30.69537 -28.34850 -26.48095 -25.80535 -25.00071 -24.02867 -22.87145 -21.14185 -20.22304 -18.83573 -18.36833 -17.94095 -17.35466 -16.77659 -16.56280 -16.02184 -15.46860 -15.05357 -14.77688 -14.68841 -14.49633 -14.33351 -14.25062 -14.06070 -13.76946 -13.58029 -13.50946 -13.03167 -12.79601 -12.65257 -12.39449 -12.37480 -12.17944 -11.85611 -11.59926 -11.34232 -11.03220 -10.88267 -10.60356 -10.36539 -9.14608 -8.87842 -8.00986 -6.07253 -0.70417 -0.32601 0.77997 1.03513 1.45065 1.49199 1.55976 1.65627 2.03791 2.49611 2.60069 2.67633 2.80661 3.29430 3.35004 3.41674 3.62768 3.81693 3.95325 4.14926 4.31389 4.41108 4.63892 4.66345 4.76435 4.82567 4.87346 4.99309 5.05810 5.18521 5.30353 5.44388 5.51227 5.78526 5.83739 5.91049 6.17800 6.39244 6.41808 6.61886 6.71109 6.87936 7.05360 7.60499 9.03423 Molecular weight = 285.13amu Principal moments of inertia in cm(-1) A = 0.026931 B = 0.003379 C = 0.003194 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1039.431727 B = 8284.264763 C = 8764.829290 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.141 4.141 3 C 0.224 3.776 4 H 0.012 0.988 5 C -0.496 4.496 6 H 0.051 0.949 7 C 0.018 3.982 8 N -0.918 5.918 9 Si 0.939 3.061 10 H -0.282 1.282 11 H -0.290 1.290 12 H -0.272 1.272 13 N -0.686 5.686 14 C 0.113 3.887 15 C -0.157 4.157 16 C 0.228 3.772 17 N -0.502 5.502 18 C 0.306 3.694 19 C -0.223 4.223 20 C 0.324 3.676 21 N -0.481 5.481 22 C 0.169 3.831 23 N -0.321 5.321 24 N -0.304 5.304 25 C 0.177 3.823 26 H 0.052 0.948 27 H 0.038 0.962 28 H 0.040 0.960 29 H 0.038 0.962 30 H 0.058 0.942 31 H 0.257 0.743 32 H 0.334 0.666 33 H 0.058 0.942 34 H 0.093 0.907 35 H 0.206 0.794 36 H 0.250 0.750 37 H 0.212 0.788 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.987 -1.856 15.277 15.517 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.181 4.181 3 C 0.116 3.884 4 H 0.030 0.970 5 C -0.535 4.535 6 H 0.069 0.931 7 C -0.180 4.180 8 N -0.558 5.558 9 Si 0.767 3.233 10 H -0.208 1.208 11 H -0.216 1.216 12 H -0.197 1.197 13 N -0.317 5.317 14 C -0.017 4.017 15 C -0.163 4.163 16 C 0.049 3.951 17 N -0.215 5.215 18 C 0.070 3.930 19 C -0.242 4.242 20 C 0.011 3.989 21 N -0.159 5.159 22 C -0.014 4.014 23 N -0.142 5.142 24 N -0.069 5.069 25 C 0.041 3.959 26 H 0.071 0.929 27 H 0.057 0.943 28 H 0.059 0.941 29 H 0.056 0.944 30 H 0.077 0.923 31 H 0.066 0.934 32 H 0.153 0.847 33 H 0.076 0.924 34 H 0.111 0.889 35 H 0.222 0.778 36 H 0.266 0.734 37 H 0.229 0.771 Dipole moment (debyes) X Y Z Total from point charges -1.607 -0.128 15.842 15.923 hybrid contribution -0.419 -0.805 -1.320 1.602 sum -2.026 -0.933 14.521 14.692 Atomic orbital electron populations 1.21509 0.96412 0.99404 1.00852 1.21981 0.96078 1.00036 0.99958 1.18947 0.94358 0.89120 0.86000 0.97005 1.21314 1.30090 1.11233 0.90889 0.93089 1.25447 0.96073 0.95790 1.00728 1.69976 1.40088 1.24888 1.20869 0.85840 0.78993 0.78491 0.79953 1.20845 1.21633 1.19726 1.60705 1.04661 1.63302 1.03068 1.20717 0.97614 0.96633 0.86746 1.20582 1.00661 0.97338 0.97712 1.23996 0.90838 0.89177 0.91139 1.68323 1.14911 1.35000 1.03219 1.20622 0.93187 0.84080 0.95111 1.15177 1.17925 0.93447 0.97601 1.24246 0.91649 0.91061 0.91958 1.81247 1.11762 1.12021 1.10908 1.24664 0.91795 0.86074 0.98899 1.77704 1.17408 1.24123 0.94916 1.47003 1.32017 1.11987 1.15915 1.22535 0.93119 0.98763 0.81445 0.92869 0.94300 0.94124 0.94354 0.92302 0.93370 0.84713 0.92443 0.88898 0.77780 0.73390 0.77134 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.42 9.40 71.98 0.68 -3.75 16 2 C -0.14 -5.50 5.51 30.60 0.17 -5.33 16 3 C 0.22 9.24 2.33 44.17 0.10 9.34 16 4 H 0.01 0.55 7.70 -2.39 -0.02 0.54 16 5 C -0.50 -24.15 7.25 25.60 0.19 -23.97 16 6 H 0.05 2.55 7.81 -2.91 -0.02 2.53 16 7 C 0.02 0.91 5.28 84.65 0.45 1.36 16 8 N -0.92 -48.53 11.38 21.45 0.24 -48.29 16 9 Si 0.94 41.38 29.54 68.60 2.03 43.41 16 10 H -0.28 -12.39 7.11 99.48 0.71 -11.69 16 11 H -0.29 -12.78 7.11 99.48 0.71 -12.07 16 12 H -0.27 -11.80 7.11 99.48 0.71 -11.09 16 13 N -0.69 -21.54 6.19 -499.48 -3.09 -24.64 16 14 C 0.11 2.53 5.65 85.56 0.48 3.01 16 15 C -0.16 -2.99 5.42 -20.02 -0.11 -3.10 16 16 C 0.23 4.72 10.97 85.18 0.93 5.65 16 17 N -0.50 -12.69 10.47 -191.79 -2.01 -14.70 16 18 C 0.31 7.47 7.88 133.92 1.06 8.52 16 19 C -0.22 -4.97 6.03 -20.85 -0.13 -5.10 16 20 C 0.32 8.44 15.84 88.33 1.40 9.84 16 21 N -0.48 -14.53 18.54 19.01 0.35 -14.18 16 22 C 0.17 2.67 11.93 85.41 1.02 3.69 16 23 N -0.32 -6.26 12.58 -56.60 -0.71 -6.97 16 24 N -0.30 -6.42 3.87 -191.71 -0.74 -7.16 16 25 C 0.18 3.11 10.94 83.40 0.91 4.02 16 26 H 0.05 1.58 6.63 -2.39 -0.02 1.56 16 27 H 0.04 1.25 8.14 -2.39 -0.02 1.23 16 28 H 0.04 1.68 6.85 -2.39 -0.02 1.66 16 29 H 0.04 1.27 7.50 -2.39 -0.02 1.25 16 30 H 0.06 2.76 6.22 -2.39 -0.01 2.75 16 31 H 0.26 13.25 8.31 -92.71 -0.77 12.48 16 32 H 0.33 9.86 6.69 -89.69 -0.60 9.26 16 33 H 0.06 1.13 7.48 -2.39 -0.02 1.11 16 34 H 0.09 2.10 7.88 -2.38 -0.02 2.08 16 35 H 0.21 3.41 8.06 -2.91 -0.02 3.38 16 36 H 0.25 1.45 8.06 -2.91 -0.02 1.43 16 37 H 0.21 2.44 8.06 -2.91 -0.02 2.42 16 Total: -1.00 -63.23 323.73 3.74 -59.49 By element: Atomic # 1 Polarization: 8.31 SS G_CDS: 0.52 Total: 8.83 kcal Atomic # 6 Polarization: -2.95 SS G_CDS: 7.15 Total: 4.20 kcal Atomic # 7 Polarization: -109.98 SS G_CDS: -5.96 Total: -115.94 kcal Atomic # 14 Polarization: 41.38 SS G_CDS: 2.03 Total: 43.41 kcal Total: -63.23 3.74 -59.49 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000579355046.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 187.220 kcal (2) G-P(sol) polarization free energy of solvation -63.231 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 123.989 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.736 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.495 kcal (6) G-S(sol) free energy of system = (1) + (5) 127.725 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds