Wall clock time and date at job start Tue Mar 31 2020 05:50:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30999 * 1 3 3 C 1.50701 * 120.00074 * 2 1 4 4 N 1.46501 * 109.47226 * 125.00263 * 3 2 1 5 5 C 1.46508 * 119.99915 * 270.00138 * 4 3 2 6 6 C 1.50702 * 109.46648 * 269.99891 * 5 4 3 7 7 H 1.07996 * 120.00544 * 359.97438 * 6 5 4 8 8 C 1.37880 * 119.99496 * 180.02562 * 6 5 4 9 9 N 1.31521 * 119.99852 * 359.97438 * 8 6 5 10 10 Si 1.86801 * 120.00165 * 180.02562 * 8 6 5 11 11 H 1.48504 * 109.46483 * 359.97438 * 10 8 6 12 12 H 1.48503 * 109.47216 * 119.99622 * 10 8 6 13 13 H 1.48502 * 109.46868 * 240.00013 * 10 8 6 14 14 C 1.38597 * 120.00287 * 89.99785 * 4 3 2 15 15 C 1.39358 * 120.49421 * 5.00705 * 14 4 3 16 16 C 1.38875 * 118.27289 * 179.97438 * 15 14 4 17 17 N 1.39618 * 120.46720 * 179.97438 * 16 15 14 18 18 C 1.37219 * 126.49096 * 180.02562 * 17 16 15 19 19 C 1.34600 * 106.82016 * 179.97438 * 18 17 16 20 20 N 1.34170 * 108.23137 * 0.24130 * 19 18 17 21 21 C 1.30456 * 109.38148 * 359.58842 * 20 19 18 22 22 N 1.33059 * 119.06623 * 0.24889 * 16 15 14 23 23 C 1.31721 * 120.91674 * 359.48750 * 22 16 15 24 24 N 1.31776 * 121.90095 * 0.52461 * 23 22 16 25 25 H 1.07993 * 120.00084 * 180.02562 * 1 2 3 26 26 H 1.08002 * 119.99806 * 359.97438 * 1 2 3 27 27 H 1.07998 * 120.00439 * 180.02562 * 2 1 3 28 28 H 1.08998 * 109.47550 * 5.00170 * 3 2 1 29 29 H 1.09003 * 109.47568 * 245.00065 * 3 2 1 30 30 H 1.08995 * 109.46872 * 29.99702 * 5 4 3 31 31 H 1.08997 * 109.46865 * 149.99630 * 5 4 3 32 32 H 0.97007 * 119.99857 * 180.02562 * 9 8 6 33 33 H 1.07994 * 120.86713 * 359.97438 * 15 14 4 34 34 H 1.07997 * 126.59085 * 359.94784 * 18 17 16 35 35 H 1.08002 * 125.88033 * 179.97438 * 19 18 17 36 36 H 1.08006 * 125.72172 * 180.15512 * 21 20 19 37 37 H 1.07996 * 119.04998 * 180.25084 * 23 22 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9938 1.3319 1.1314 5 6 2.5589 1.8649 2.4249 6 6 2.8444 3.3436 2.4804 7 1 3.3041 3.8369 1.6368 8 6 2.5195 4.0665 3.6086 9 7 1.9601 3.4656 4.6361 10 14 2.8726 5.8996 3.6773 11 1 3.5004 6.3307 2.4025 12 1 1.6020 6.6412 3.8796 13 1 3.7966 6.1837 4.8046 14 6 4.2854 0.8529 0.9781 15 6 4.7429 0.4402 -0.2718 16 6 6.0452 -0.0313 -0.3728 17 7 6.5505 -0.4571 -1.6027 18 6 7.8111 -0.9431 -1.8429 19 6 7.8733 -1.2328 -3.1559 20 7 6.6891 -0.9296 -3.7091 21 6 5.8866 -0.4695 -2.7893 22 7 6.8029 -0.0768 0.7201 23 6 6.3367 0.3270 1.8840 24 7 5.1073 0.7809 2.0222 25 1 -0.5400 -0.9352 0.0004 26 1 -0.5400 0.9353 0.0004 27 1 1.8501 -0.9353 -0.0004 28 1 1.3587 2.1317 0.0896 29 1 2.6213 1.4027 -0.9314 30 1 1.4889 1.6966 2.5459 31 1 3.0990 1.3602 3.2259 32 1 1.7312 3.9743 5.4298 33 1 4.1014 0.4858 -1.1394 34 1 8.6017 -1.0686 -1.1179 35 1 8.7302 -1.6355 -3.6754 36 1 4.8673 -0.1480 -2.9450 37 1 6.9792 0.2807 2.7508 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000589869733.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:50:55 Heat of formation + Delta-G solvation = 154.466244 kcal Electronic energy + Delta-G solvation = -21615.738397 eV Core-core repulsion = 18395.800533 eV Total energy + Delta-G solvation = -3219.937864 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 285.128 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -42.34742 -40.44713 -37.28090 -34.73633 -33.55616 -32.86880 -31.30054 -30.68479 -29.36506 -27.66867 -25.80693 -24.47449 -23.48358 -22.17962 -21.01283 -20.68256 -19.81278 -18.49954 -17.14198 -16.48905 -16.10492 -15.75016 -15.62237 -15.06348 -14.57933 -14.43935 -14.21523 -14.09594 -13.89780 -13.66319 -13.39426 -12.97887 -12.51482 -11.82654 -11.49334 -11.41660 -11.14619 -10.99638 -10.77453 -10.49068 -10.39765 -10.25231 -10.24565 -9.58536 -9.31389 -9.10659 -8.91133 -8.61949 -8.55330 -7.41224 -6.16289 -4.22917 0.87458 1.54134 2.27405 2.41774 2.43313 3.03115 3.20938 3.29385 3.32289 3.52418 4.21376 4.33168 4.33649 4.52095 4.61162 4.85086 5.08389 5.14503 5.17353 5.25602 5.27017 5.42031 5.46567 5.56887 5.62449 5.88127 6.02740 6.08368 6.32410 6.57317 6.67075 6.72572 6.82512 7.06984 7.23131 7.35880 7.66198 7.82069 7.89570 7.95468 8.06771 8.61194 8.81719 9.42416 10.90440 Molecular weight = 285.13amu Principal moments of inertia in cm(-1) A = 0.017384 B = 0.004650 C = 0.004078 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1610.257433 B = 6020.582911 C = 6864.713947 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.171 4.171 3 C 0.144 3.856 4 N -0.559 5.559 5 C 0.249 3.751 6 C -0.529 4.529 7 H 0.057 0.943 8 C 0.065 3.935 9 N -0.891 5.891 10 Si 0.897 3.103 11 H -0.274 1.274 12 H -0.283 1.283 13 H -0.282 1.282 14 C 0.471 3.529 15 C -0.319 4.319 16 C 0.408 3.592 17 N -0.406 5.406 18 C -0.020 4.020 19 C -0.038 4.038 20 N -0.483 5.483 21 C 0.197 3.803 22 N -0.597 5.597 23 C 0.366 3.634 24 N -0.557 5.557 25 H 0.096 0.904 26 H 0.100 0.900 27 H 0.105 0.895 28 H 0.095 0.905 29 H 0.077 0.923 30 H 0.034 0.966 31 H 0.054 0.946 32 H 0.264 0.736 33 H 0.141 0.859 34 H 0.182 0.818 35 H 0.174 0.826 36 H 0.210 0.790 37 H 0.199 0.801 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.054 -7.907 -10.177 13.511 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.191 4.191 3 C 0.021 3.979 4 N -0.264 5.264 5 C 0.131 3.869 6 C -0.568 4.568 7 H 0.075 0.925 8 C -0.137 4.137 9 N -0.529 5.529 10 Si 0.724 3.276 11 H -0.199 1.199 12 H -0.209 1.209 13 H -0.208 1.208 14 C 0.225 3.775 15 C -0.351 4.351 16 C 0.176 3.824 17 N -0.087 5.087 18 C -0.151 4.151 19 C -0.183 4.183 20 N -0.200 5.200 21 C -0.085 4.085 22 N -0.322 5.322 23 C 0.075 3.925 24 N -0.281 5.281 25 H 0.114 0.886 26 H 0.119 0.881 27 H 0.123 0.877 28 H 0.113 0.887 29 H 0.095 0.905 30 H 0.052 0.948 31 H 0.072 0.928 32 H 0.074 0.926 33 H 0.159 0.841 34 H 0.199 0.801 35 H 0.192 0.808 36 H 0.226 0.774 37 H 0.215 0.785 Dipole moment (debyes) X Y Z Total from point charges 4.064 -7.873 -9.933 13.310 hybrid contribution -0.114 1.172 0.379 1.236 sum 3.950 -6.701 -9.555 12.321 Atomic orbital electron populations 1.23845 0.95745 1.01961 0.99818 1.23361 0.96387 0.98821 1.00520 1.20661 0.92279 0.95827 0.89168 1.47312 1.06244 1.58616 1.14194 1.19486 0.95660 0.93916 0.77863 1.21413 1.41030 0.93070 1.01325 0.92507 1.24896 0.94891 0.98696 0.95265 1.69939 1.41688 1.36149 1.05167 0.86466 0.78029 0.84915 0.78154 1.19881 1.20881 1.20784 1.18309 0.86708 0.85156 0.87322 1.21424 0.96873 1.17024 0.99789 1.17928 0.88887 0.90977 0.84655 1.43113 1.12281 1.46714 1.06635 1.22959 0.88315 1.04758 0.99019 1.22369 0.97153 1.07144 0.91603 1.70322 1.02713 1.16211 1.30778 1.25303 1.00258 1.04001 0.78912 1.67743 1.38437 1.26947 0.99093 1.24532 0.89063 0.86152 0.92769 1.68170 1.05327 1.22332 1.32240 0.88563 0.88148 0.87712 0.88714 0.90517 0.94789 0.92760 0.92637 0.84108 0.80114 0.80846 0.77388 0.78458 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.13 14.32 29.01 0.42 -1.71 16 2 C -0.17 -2.30 9.85 -36.03 -0.35 -2.65 16 3 C 0.14 2.18 5.71 -5.19 -0.03 2.15 16 4 N -0.56 -10.78 2.54 -176.44 -0.45 -11.23 16 5 C 0.25 5.94 5.23 -5.19 -0.03 5.92 16 6 C -0.53 -13.91 9.39 -34.44 -0.32 -14.23 16 7 H 0.06 1.52 7.81 -52.49 -0.41 1.11 16 8 C 0.07 1.75 5.46 -17.82 -0.10 1.65 16 9 N -0.89 -24.98 13.29 55.43 0.74 -24.24 16 10 Si 0.90 20.85 29.54 -169.99 -5.02 15.83 16 11 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 12 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 13 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 14 C 0.47 8.80 7.39 -154.75 -1.14 7.66 16 15 C -0.32 -4.98 8.73 -38.93 -0.34 -5.32 16 16 C 0.41 6.40 7.53 -153.95 -1.16 5.24 16 17 N -0.41 -5.73 2.98 -63.70 -0.19 -5.92 16 18 C -0.02 -0.26 11.21 -16.43 -0.18 -0.44 16 19 C -0.04 -0.47 11.85 -17.82 -0.21 -0.68 16 20 N -0.48 -6.74 11.24 -14.46 -0.16 -6.90 16 21 C 0.20 2.55 11.93 -89.56 -1.07 1.48 16 22 N -0.60 -9.60 10.02 -13.73 -0.14 -9.74 16 23 C 0.37 5.97 12.28 -92.23 -1.13 4.84 16 24 N -0.56 -10.90 9.23 -13.86 -0.13 -11.03 16 25 H 0.10 1.01 8.06 -52.49 -0.42 0.59 16 26 H 0.10 1.18 7.84 -52.49 -0.41 0.77 16 27 H 0.10 1.38 8.06 -52.49 -0.42 0.96 16 28 H 0.09 1.48 7.72 -51.93 -0.40 1.08 16 29 H 0.08 0.98 6.05 -51.93 -0.31 0.66 16 30 H 0.03 0.85 8.07 -51.93 -0.42 0.43 16 31 H 0.05 1.43 7.33 -51.93 -0.38 1.05 16 32 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 33 H 0.14 1.80 4.97 -52.49 -0.26 1.54 16 34 H 0.18 2.01 8.06 -52.49 -0.42 1.59 16 35 H 0.17 1.60 8.06 -52.49 -0.42 1.17 16 36 H 0.21 2.01 7.12 -52.48 -0.37 1.64 16 37 H 0.20 2.51 8.06 -52.49 -0.42 2.08 16 LS Contribution 326.54 15.07 4.92 4.92 Total: -1.00 -30.95 326.54 -10.30 -41.26 By element: Atomic # 1 Polarization: 7.38 SS G_CDS: -4.22 Total: 3.16 kcal Atomic # 6 Polarization: 9.55 SS G_CDS: -5.65 Total: 3.90 kcal Atomic # 7 Polarization: -68.74 SS G_CDS: -0.33 Total: -69.07 kcal Atomic # 14 Polarization: 20.85 SS G_CDS: -5.02 Total: 15.83 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -30.95 -10.30 -41.26 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000589869733.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 195.722 kcal (2) G-P(sol) polarization free energy of solvation -30.951 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 164.771 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.305 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.256 kcal (6) G-S(sol) free energy of system = (1) + (5) 154.466 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds