Wall clock time and date at job start Tue Mar 31 2020 05:50:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30999 * 1 3 3 C 1.50701 * 120.00074 * 2 1 4 4 N 1.46501 * 109.47226 * 125.00263 * 3 2 1 5 5 C 1.46508 * 119.99915 * 270.00138 * 4 3 2 6 6 C 1.50702 * 109.46648 * 269.99891 * 5 4 3 7 7 H 1.07996 * 120.00544 * 359.97438 * 6 5 4 8 8 C 1.37880 * 119.99496 * 180.02562 * 6 5 4 9 9 N 1.31521 * 119.99852 * 359.97438 * 8 6 5 10 10 Si 1.86801 * 120.00165 * 180.02562 * 8 6 5 11 11 H 1.48504 * 109.46483 * 359.97438 * 10 8 6 12 12 H 1.48503 * 109.47216 * 119.99622 * 10 8 6 13 13 H 1.48502 * 109.46868 * 240.00013 * 10 8 6 14 14 C 1.38597 * 120.00287 * 89.99785 * 4 3 2 15 15 C 1.39358 * 120.49421 * 5.00705 * 14 4 3 16 16 C 1.38875 * 118.27289 * 179.97438 * 15 14 4 17 17 N 1.39618 * 120.46720 * 179.97438 * 16 15 14 18 18 C 1.37219 * 126.49096 * 180.02562 * 17 16 15 19 19 C 1.34600 * 106.82016 * 179.97438 * 18 17 16 20 20 N 1.34170 * 108.23137 * 0.24130 * 19 18 17 21 21 C 1.30456 * 109.38148 * 359.58842 * 20 19 18 22 22 N 1.33059 * 119.06623 * 0.24889 * 16 15 14 23 23 C 1.31721 * 120.91674 * 359.48750 * 22 16 15 24 24 N 1.31776 * 121.90095 * 0.52461 * 23 22 16 25 25 H 1.07993 * 120.00084 * 180.02562 * 1 2 3 26 26 H 1.08002 * 119.99806 * 359.97438 * 1 2 3 27 27 H 1.07998 * 120.00439 * 180.02562 * 2 1 3 28 28 H 1.08998 * 109.47550 * 5.00170 * 3 2 1 29 29 H 1.09003 * 109.47568 * 245.00065 * 3 2 1 30 30 H 1.08995 * 109.46872 * 29.99702 * 5 4 3 31 31 H 1.08997 * 109.46865 * 149.99630 * 5 4 3 32 32 H 0.97007 * 119.99857 * 180.02562 * 9 8 6 33 33 H 1.07994 * 120.86713 * 359.97438 * 15 14 4 34 34 H 1.07997 * 126.59085 * 359.94784 * 18 17 16 35 35 H 1.08002 * 125.88033 * 179.97438 * 19 18 17 36 36 H 1.08006 * 125.72172 * 180.15512 * 21 20 19 37 37 H 1.07996 * 119.04998 * 180.25084 * 23 22 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9938 1.3319 1.1314 5 6 2.5589 1.8649 2.4249 6 6 2.8444 3.3436 2.4804 7 1 3.3041 3.8369 1.6368 8 6 2.5195 4.0665 3.6086 9 7 1.9601 3.4656 4.6361 10 14 2.8726 5.8996 3.6773 11 1 3.5004 6.3307 2.4025 12 1 1.6020 6.6412 3.8796 13 1 3.7966 6.1837 4.8046 14 6 4.2854 0.8529 0.9781 15 6 4.7429 0.4402 -0.2718 16 6 6.0452 -0.0313 -0.3728 17 7 6.5505 -0.4571 -1.6027 18 6 7.8111 -0.9431 -1.8429 19 6 7.8733 -1.2328 -3.1559 20 7 6.6891 -0.9296 -3.7091 21 6 5.8866 -0.4695 -2.7893 22 7 6.8029 -0.0768 0.7201 23 6 6.3367 0.3270 1.8840 24 7 5.1073 0.7809 2.0222 25 1 -0.5400 -0.9352 0.0004 26 1 -0.5400 0.9353 0.0004 27 1 1.8501 -0.9353 -0.0004 28 1 1.3587 2.1317 0.0896 29 1 2.6213 1.4027 -0.9314 30 1 1.4889 1.6966 2.5459 31 1 3.0990 1.3602 3.2259 32 1 1.7312 3.9743 5.4298 33 1 4.1014 0.4858 -1.1394 34 1 8.6017 -1.0686 -1.1179 35 1 8.7302 -1.6355 -3.6754 36 1 4.8673 -0.1480 -2.9450 37 1 6.9792 0.2807 2.7508 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000589869733.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:50:54 Heat of formation + Delta-G solvation = 140.512796 kcal Electronic energy + Delta-G solvation = -21616.343464 eV Core-core repulsion = 18395.800533 eV Total energy + Delta-G solvation = -3220.542931 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 285.128 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -43.38866 -41.71843 -38.63545 -35.90297 -35.10854 -34.40150 -32.64853 -31.93965 -30.45677 -29.26006 -27.18395 -25.77957 -25.00560 -23.53731 -22.04826 -21.86428 -20.87807 -19.67949 -18.71603 -18.27158 -17.37080 -16.89027 -16.78454 -16.65617 -15.89031 -15.82205 -15.48438 -15.14940 -14.91633 -14.88532 -14.56200 -14.29751 -14.10710 -13.31866 -13.19762 -12.75301 -12.67228 -12.61247 -12.24394 -12.21470 -11.78980 -11.68181 -11.34870 -11.27126 -10.62762 -10.36023 -10.29553 -10.23437 -9.60835 -8.89833 -8.17069 -6.33737 -0.30342 0.24359 1.21016 1.31516 1.35039 1.37141 1.39929 1.50108 2.05999 2.18798 2.40329 2.93404 3.10375 3.18811 3.41879 3.57831 3.71576 3.99914 4.01713 4.12289 4.17425 4.33425 4.44106 4.52232 4.62960 4.79555 4.97327 5.01256 5.03813 5.14373 5.34749 5.61840 5.65061 5.67523 5.75154 5.87672 6.04621 6.08631 6.28001 6.50584 6.77274 6.89256 7.30720 7.37351 8.86149 Molecular weight = 285.13amu Principal moments of inertia in cm(-1) A = 0.017384 B = 0.004650 C = 0.004078 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1610.257433 B = 6020.582911 C = 6864.713947 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.184 4.184 3 C 0.142 3.858 4 N -0.571 5.571 5 C 0.271 3.729 6 C -0.535 4.535 7 H 0.048 0.952 8 C 0.017 3.983 9 N -0.923 5.923 10 Si 0.959 3.041 11 H -0.272 1.272 12 H -0.274 1.274 13 H -0.281 1.281 14 C 0.452 3.548 15 C -0.308 4.308 16 C 0.407 3.593 17 N -0.414 5.414 18 C -0.035 4.035 19 C -0.037 4.037 20 N -0.505 5.505 21 C 0.197 3.803 22 N -0.596 5.596 23 C 0.364 3.636 24 N -0.600 5.600 25 H 0.115 0.885 26 H 0.102 0.898 27 H 0.108 0.892 28 H 0.084 0.916 29 H 0.102 0.898 30 H 0.017 0.983 31 H 0.021 0.979 32 H 0.266 0.734 33 H 0.169 0.831 34 H 0.193 0.807 35 H 0.201 0.799 36 H 0.237 0.763 37 H 0.226 0.774 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.530 -7.976 -11.837 14.975 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.204 4.204 3 C 0.020 3.980 4 N -0.277 5.277 5 C 0.151 3.849 6 C -0.574 4.574 7 H 0.067 0.933 8 C -0.183 4.183 9 N -0.563 5.563 10 Si 0.784 3.216 11 H -0.196 1.196 12 H -0.200 1.200 13 H -0.207 1.207 14 C 0.208 3.792 15 C -0.339 4.339 16 C 0.174 3.826 17 N -0.097 5.097 18 C -0.163 4.163 19 C -0.180 4.180 20 N -0.223 5.223 21 C -0.085 4.085 22 N -0.321 5.321 23 C 0.074 3.926 24 N -0.325 5.325 25 H 0.134 0.866 26 H 0.120 0.880 27 H 0.126 0.874 28 H 0.102 0.898 29 H 0.120 0.880 30 H 0.035 0.965 31 H 0.039 0.961 32 H 0.075 0.925 33 H 0.187 0.813 34 H 0.210 0.790 35 H 0.218 0.782 36 H 0.253 0.747 37 H 0.242 0.758 Dipole moment (debyes) X Y Z Total from point charges 4.575 -7.970 -11.649 14.837 hybrid contribution -0.201 1.105 0.820 1.391 sum 4.373 -6.865 -10.829 13.547 Atomic orbital electron populations 1.24058 0.95445 1.02987 0.97763 1.23253 0.96736 0.98053 1.02337 1.20835 0.91933 0.96467 0.88725 1.47125 1.07341 1.59596 1.13630 1.18834 0.93919 0.92554 0.79631 1.21646 1.40399 0.94401 1.00967 0.93322 1.25666 0.94786 1.02795 0.95005 1.70041 1.42785 1.37742 1.05741 0.85506 0.78048 0.80082 0.77961 1.19647 1.19954 1.20699 1.18568 0.86413 0.85802 0.88402 1.21519 0.97171 1.15877 0.99380 1.18095 0.88950 0.90431 0.85125 1.43207 1.12966 1.47257 1.06244 1.23284 0.88281 1.05089 0.99682 1.22856 0.97443 1.06199 0.91533 1.70366 1.03564 1.17013 1.31317 1.25951 1.01211 1.03048 0.78245 1.67826 1.38438 1.26633 0.99220 1.25073 0.88488 0.85293 0.93792 1.68145 1.06779 1.23907 1.33633 0.86635 0.88021 0.87410 0.89770 0.87981 0.96535 0.96053 0.92482 0.81331 0.79013 0.78203 0.74685 0.75750 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.74 14.32 67.78 0.97 -2.77 16 2 C -0.18 -4.73 9.85 25.65 0.25 -4.47 16 3 C 0.14 4.19 5.71 85.63 0.49 4.68 16 4 N -0.57 -22.19 2.54 -712.15 -1.81 -24.00 16 5 C 0.27 13.37 5.23 85.63 0.45 13.82 16 6 C -0.54 -28.63 9.39 25.60 0.24 -28.39 16 7 H 0.05 2.63 7.81 -2.91 -0.02 2.60 16 8 C 0.02 0.92 5.46 84.65 0.46 1.39 16 9 N -0.92 -52.74 13.29 21.45 0.28 -52.46 16 10 Si 0.96 42.94 29.54 68.60 2.03 44.96 16 11 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 12 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16 13 H -0.28 -12.48 7.11 99.48 0.71 -11.78 16 14 C 0.45 16.84 7.39 133.05 0.98 17.82 16 15 C -0.31 -9.15 8.73 22.69 0.20 -8.95 16 16 C 0.41 12.11 7.53 132.59 1.00 13.11 16 17 N -0.41 -10.82 2.98 -355.45 -1.06 -11.88 16 18 C -0.03 -0.81 11.21 83.02 0.93 0.12 16 19 C -0.04 -0.81 11.85 83.50 0.99 0.17 16 20 N -0.51 -12.90 11.24 -199.65 -2.24 -15.15 16 21 C 0.20 4.58 11.93 179.98 2.15 6.73 16 22 N -0.60 -18.46 10.02 -197.34 -1.98 -20.44 16 23 C 0.36 11.70 12.28 180.91 2.22 13.92 16 24 N -0.60 -23.73 9.23 -197.76 -1.82 -25.56 16 25 H 0.12 2.17 8.06 -2.91 -0.02 2.14 16 26 H 0.10 2.27 7.84 -2.91 -0.02 2.25 16 27 H 0.11 2.70 8.06 -2.91 -0.02 2.68 16 28 H 0.08 2.62 7.72 -2.39 -0.02 2.60 16 29 H 0.10 2.40 6.05 -2.39 -0.01 2.38 16 30 H 0.02 0.86 8.07 -2.39 -0.02 0.84 16 31 H 0.02 1.18 7.33 -2.39 -0.02 1.17 16 32 H 0.27 14.34 8.31 -92.70 -0.77 13.57 16 33 H 0.17 3.86 4.97 -2.91 -0.01 3.84 16 34 H 0.19 3.92 8.06 -2.91 -0.02 3.89 16 35 H 0.20 3.12 8.06 -2.91 -0.02 3.09 16 36 H 0.24 3.77 7.12 -2.91 -0.02 3.75 16 37 H 0.23 5.54 8.06 -2.91 -0.02 5.52 16 Total: -1.00 -66.96 326.54 5.81 -61.15 By element: Atomic # 1 Polarization: 15.10 SS G_CDS: 1.08 Total: 16.18 kcal Atomic # 6 Polarization: 15.84 SS G_CDS: 11.33 Total: 27.18 kcal Atomic # 7 Polarization: -140.84 SS G_CDS: -8.63 Total: -149.48 kcal Atomic # 14 Polarization: 42.94 SS G_CDS: 2.03 Total: 44.96 kcal Total: -66.96 5.81 -61.15 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000589869733.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 201.668 kcal (2) G-P(sol) polarization free energy of solvation -66.963 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 134.704 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.808 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.155 kcal (6) G-S(sol) free energy of system = (1) + (5) 140.513 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds