Wall clock time and date at job start Tue Mar 31 2020 05:29:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31526 * 1 3 3 Si 1.86801 * 119.99656 * 2 1 4 4 H 1.48502 * 109.47366 * 239.99831 * 3 2 1 5 5 H 1.48495 * 109.47310 * 0.02562 * 3 2 1 6 6 H 1.48512 * 109.46695 * 120.00124 * 3 2 1 7 7 C 1.37872 * 120.00296 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00399 * 173.38678 * 7 2 1 9 9 C 1.50708 * 119.99835 * 353.38003 * 7 2 1 10 10 C 1.53006 * 115.54786 * 85.35425 * 9 7 2 11 11 N 1.46507 * 109.46853 * 65.12290 * 10 9 7 12 12 C 1.39756 * 119.99346 * 180.53674 * 11 10 9 13 13 C 1.38925 * 120.00470 * 180.02562 * 12 11 10 14 14 C 1.38024 * 119.98954 * 179.72893 * 13 12 11 15 15 C 1.38842 * 120.00950 * 0.24823 * 14 13 12 16 16 N 1.40356 * 119.99020 * 180.02562 * 15 14 13 17 17 C 1.35031 * 127.38526 * 179.71066 * 16 15 14 18 18 N 1.30763 * 107.27719 * 179.83782 * 17 16 15 19 19 N 1.28417 * 110.63892 * 0.44021 * 18 17 16 20 20 N 1.28946 * 110.19896 * 359.72340 * 19 18 17 21 21 C 1.38839 * 120.01856 * 359.97438 * 15 14 13 22 22 C 1.38021 * 120.01390 * 0.02602 * 21 15 14 23 23 C 1.52997 * 117.49956 * 231.02007 * 9 7 2 24 24 C 1.52996 * 117.49948 * 299.68590 * 9 7 2 25 25 H 0.97000 * 119.99763 * 5.05593 * 1 2 3 26 26 H 1.09004 * 109.46983 * 305.12815 * 10 9 7 27 27 H 1.08995 * 109.47210 * 185.12550 * 10 9 7 28 28 H 0.96996 * 120.00195 * 0.54133 * 11 10 9 29 29 H 1.08001 * 120.01007 * 0.02562 * 13 12 11 30 30 H 1.07999 * 119.99672 * 180.23119 * 14 13 12 31 31 H 1.08005 * 126.36188 * 0.02562 * 17 16 15 32 32 H 1.08003 * 119.99205 * 180.02562 * 21 15 14 33 33 H 1.07991 * 120.00836 * 179.97438 * 22 21 15 34 34 H 1.08998 * 117.49908 * 215.00309 * 23 9 7 35 35 H 1.08994 * 117.49814 * 0.03148 * 23 9 7 36 36 H 1.08994 * 117.50233 * 359.97433 * 24 9 7 37 37 H 1.09001 * 117.49765 * 144.97472 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3153 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1030 1.6966 -1.2125 5 1 1.2842 2.7465 0.0006 6 1 3.1030 1.6964 1.2126 7 6 2.0047 -1.1940 -0.0005 8 1 3.0793 -1.1971 -0.1082 9 6 1.2587 -2.4949 0.1494 10 6 0.6982 -3.0871 -1.1453 11 7 1.8043 -3.4600 -2.0307 12 6 1.5383 -4.0154 -3.2852 13 6 2.5870 -4.3696 -4.1247 14 6 2.3240 -4.9233 -5.3614 15 6 1.0115 -5.1216 -5.7685 16 7 0.7445 -5.6852 -7.0259 17 6 -0.4646 -5.9476 -7.5667 18 7 -0.2570 -6.4655 -8.7493 19 7 1.0013 -6.5566 -8.9890 20 7 1.6788 -6.1031 -7.9900 21 6 -0.0369 -4.7635 -4.9317 22 6 0.2251 -4.2097 -3.6949 23 6 1.7512 -3.4726 1.2182 24 6 0.4466 -2.7001 1.4296 25 1 -0.4850 0.8368 -0.0740 26 1 0.0697 -2.3472 -1.6410 27 1 0.1046 -3.9713 -0.9133 28 1 2.7212 -3.3214 -1.7461 29 1 3.6080 -4.2162 -3.8079 30 1 3.1392 -5.2022 -6.0126 31 1 -1.4249 -5.7614 -7.1088 32 1 -1.0577 -4.9183 -5.2486 33 1 -0.5904 -3.9308 -3.0443 34 1 1.6759 -4.5376 0.9991 35 1 2.6144 -3.1747 1.8133 36 1 0.4522 -1.8945 2.1638 37 1 -0.4871 -3.2567 1.3496 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000593932272.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:29:22 Heat of formation + Delta-G solvation = 173.311794 kcal Electronic energy + Delta-G solvation = -21031.363162 eV Core-core repulsion = 17812.242503 eV Total energy + Delta-G solvation = -3219.120659 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 285.128 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -43.13902 -39.59217 -37.32675 -35.62124 -33.39070 -32.34159 -32.13318 -31.04404 -28.94615 -26.23085 -25.41371 -24.32111 -23.62735 -21.88028 -21.42373 -21.11214 -19.39222 -18.58391 -17.06084 -16.56157 -16.42820 -16.12179 -15.34165 -14.83677 -14.36646 -14.19512 -13.96915 -13.50874 -13.47032 -13.30806 -13.00232 -12.81341 -12.57586 -12.16944 -11.72200 -11.47662 -11.16859 -11.08300 -11.05046 -10.96490 -10.67125 -10.50998 -10.42707 -9.76677 -9.63058 -9.12161 -9.01528 -8.65406 -8.40375 -7.07804 -6.24534 -4.33167 0.50271 1.33392 1.84267 1.84789 2.25285 3.16902 3.23178 3.25315 3.76184 3.81532 4.04571 4.22895 4.29208 4.74270 4.85657 4.93784 5.03988 5.13011 5.28704 5.36172 5.45497 5.59305 5.76899 5.89731 5.93791 6.10768 6.17788 6.27952 6.31248 6.37384 6.44678 6.50576 6.57053 6.83271 6.89267 7.18756 7.27272 7.65241 7.66879 8.09996 8.16687 8.39513 8.67707 9.34882 10.83177 Molecular weight = 285.13amu Principal moments of inertia in cm(-1) A = 0.025754 B = 0.003320 C = 0.003195 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1086.946179 B = 8431.962757 C = 8761.858100 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.876 5.876 2 C 0.076 3.924 3 Si 0.891 3.109 4 H -0.276 1.276 5 H -0.286 1.286 6 H -0.276 1.276 7 C -0.503 4.503 8 H 0.059 0.941 9 C 0.029 3.971 10 C 0.158 3.842 11 N -0.704 5.704 12 C 0.251 3.749 13 C -0.193 4.193 14 C -0.041 4.041 15 C 0.024 3.976 16 N -0.295 5.295 17 C 0.207 3.793 18 N -0.338 5.338 19 N -0.051 5.051 20 N -0.091 5.091 21 C -0.058 4.058 22 C -0.185 4.185 23 C -0.210 4.210 24 C -0.147 4.147 25 H 0.263 0.737 26 H 0.072 0.928 27 H 0.035 0.965 28 H 0.406 0.594 29 H 0.132 0.868 30 H 0.134 0.866 31 H 0.235 0.765 32 H 0.128 0.872 33 H 0.138 0.862 34 H 0.066 0.934 35 H 0.078 0.922 36 H 0.084 0.916 37 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.002 -8.224 -5.769 10.095 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.512 5.512 2 C -0.129 4.129 3 Si 0.718 3.282 4 H -0.202 1.202 5 H -0.212 1.212 6 H -0.201 1.201 7 C -0.540 4.540 8 H 0.077 0.923 9 C 0.028 3.972 10 C 0.035 3.965 11 N -0.324 5.324 12 C 0.138 3.862 13 C -0.217 4.217 14 C -0.062 4.062 15 C -0.071 4.071 16 N -0.084 5.084 17 C -0.089 4.089 18 N -0.189 5.189 19 N -0.046 5.046 20 N -0.077 5.077 21 C -0.080 4.080 22 C -0.209 4.209 23 C -0.247 4.247 24 C -0.185 4.185 25 H 0.073 0.927 26 H 0.091 0.909 27 H 0.053 0.947 28 H 0.241 0.759 29 H 0.150 0.850 30 H 0.152 0.848 31 H 0.251 0.749 32 H 0.146 0.854 33 H 0.155 0.845 34 H 0.084 0.916 35 H 0.097 0.903 36 H 0.102 0.898 37 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -0.543 -8.478 -6.616 10.768 hybrid contribution 0.227 1.475 1.030 1.813 sum -0.316 -7.003 -5.586 8.964 Atomic orbital electron populations 1.69942 1.05893 1.27227 1.48124 1.24961 0.94833 0.98993 0.94066 0.86684 0.79724 0.83011 0.78774 1.20175 1.21173 1.20131 1.20301 0.92898 0.88594 1.52237 0.92260 1.18959 0.98721 0.94005 0.85536 1.21166 0.87653 0.96393 0.91302 1.45197 1.10652 1.63138 1.13379 1.18188 0.93314 0.88756 0.85910 1.20494 0.98702 1.07826 0.94648 1.20545 0.94134 0.95797 0.95722 1.17206 0.95578 1.11013 0.83278 1.48954 1.05456 1.39986 1.13956 1.27249 0.92966 0.97135 0.91580 1.74409 1.09632 1.20845 1.14038 1.78001 0.97866 1.11969 1.16769 1.82592 1.13577 1.16961 0.94522 1.20491 0.97030 0.97316 0.93137 1.20522 0.95788 1.07355 0.97248 1.23035 0.98732 0.95634 1.07338 1.22506 0.92273 1.01107 1.02648 0.92690 0.90950 0.94692 0.75898 0.84984 0.84844 0.74942 0.85424 0.84468 0.91574 0.90295 0.89752 0.91649 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -22.44 12.92 55.43 0.72 -21.73 16 2 C 0.08 1.88 5.39 -17.82 -0.10 1.78 16 3 Si 0.89 19.55 29.55 -169.99 -5.02 14.53 16 4 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 5 H -0.29 -6.33 7.11 56.52 0.40 -5.93 16 6 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 7 C -0.50 -12.00 8.66 -34.44 -0.30 -12.30 16 8 H 0.06 1.41 7.82 -52.49 -0.41 1.00 16 9 C 0.03 0.60 1.37 -155.66 -0.21 0.38 16 10 C 0.16 2.91 4.74 -4.03 -0.02 2.89 16 11 N -0.70 -11.23 5.65 -58.59 -0.33 -11.56 16 12 C 0.25 3.54 6.65 -83.74 -0.56 2.99 16 13 C -0.19 -2.44 9.89 -39.41 -0.39 -2.83 16 14 C -0.04 -0.51 9.69 -39.44 -0.38 -0.89 16 15 C 0.02 0.29 6.71 -83.51 -0.56 -0.27 16 16 N -0.29 -3.75 3.86 -11.71 -0.05 -3.79 16 17 C 0.21 2.22 12.15 -90.17 -1.10 1.13 16 18 N -0.34 -4.63 12.16 29.64 0.36 -4.27 16 19 N -0.05 -0.79 13.39 60.35 0.81 0.02 16 20 N -0.09 -1.35 13.33 60.35 0.80 -0.55 16 21 C -0.06 -0.64 9.48 -39.44 -0.37 -1.01 16 22 C -0.19 -2.39 9.30 -39.41 -0.37 -2.76 16 23 C -0.21 -3.95 9.96 -26.69 -0.27 -4.21 16 24 C -0.15 -3.03 9.42 -26.69 -0.25 -3.28 16 25 H 0.26 6.56 8.32 -40.82 -0.34 6.22 16 26 H 0.07 1.50 7.91 -51.93 -0.41 1.09 16 27 H 0.03 0.60 7.93 -51.93 -0.41 0.18 16 28 H 0.41 6.40 8.40 -40.82 -0.34 6.06 16 29 H 0.13 1.47 8.06 -52.49 -0.42 1.04 16 30 H 0.13 1.57 7.76 -52.49 -0.41 1.16 16 31 H 0.23 1.27 7.19 -52.48 -0.38 0.89 16 32 H 0.13 0.97 6.87 -52.48 -0.36 0.60 16 33 H 0.14 1.75 6.72 -52.49 -0.35 1.40 16 34 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 35 H 0.08 1.49 8.14 -51.93 -0.42 1.07 16 36 H 0.08 1.89 8.14 -51.93 -0.42 1.47 16 37 H 0.06 1.25 8.14 -51.93 -0.42 0.82 16 LS Contribution 325.15 15.07 4.90 4.90 Total: -1.00 -27.34 325.15 -7.00 -34.34 By element: Atomic # 1 Polarization: 10.80 SS G_CDS: -4.32 Total: 6.48 kcal Atomic # 6 Polarization: -13.51 SS G_CDS: -4.87 Total: -18.38 kcal Atomic # 7 Polarization: -44.18 SS G_CDS: 2.31 Total: -41.87 kcal Atomic # 14 Polarization: 19.55 SS G_CDS: -5.02 Total: 14.53 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -27.34 -7.00 -34.34 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593932272.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 207.652 kcal (2) G-P(sol) polarization free energy of solvation -27.338 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 180.315 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.003 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.341 kcal (6) G-S(sol) free energy of system = (1) + (5) 173.312 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds