Wall clock time and date at job start Tue Mar 31 2020 05:29:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31526 * 1 3 3 Si 1.86801 * 119.99656 * 2 1 4 4 H 1.48502 * 109.47366 * 239.99831 * 3 2 1 5 5 H 1.48495 * 109.47310 * 0.02562 * 3 2 1 6 6 H 1.48512 * 109.46695 * 120.00124 * 3 2 1 7 7 C 1.37872 * 120.00296 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00399 * 173.38678 * 7 2 1 9 9 C 1.50708 * 119.99835 * 353.38003 * 7 2 1 10 10 C 1.53006 * 115.54786 * 85.35425 * 9 7 2 11 11 N 1.46507 * 109.46853 * 65.12290 * 10 9 7 12 12 C 1.39756 * 119.99346 * 180.53674 * 11 10 9 13 13 C 1.38925 * 120.00470 * 180.02562 * 12 11 10 14 14 C 1.38024 * 119.98954 * 179.72893 * 13 12 11 15 15 C 1.38842 * 120.00950 * 0.24823 * 14 13 12 16 16 N 1.40356 * 119.99020 * 180.02562 * 15 14 13 17 17 C 1.35031 * 127.38526 * 179.71066 * 16 15 14 18 18 N 1.30763 * 107.27719 * 179.83782 * 17 16 15 19 19 N 1.28417 * 110.63892 * 0.44021 * 18 17 16 20 20 N 1.28946 * 110.19896 * 359.72340 * 19 18 17 21 21 C 1.38839 * 120.01856 * 359.97438 * 15 14 13 22 22 C 1.38021 * 120.01390 * 0.02602 * 21 15 14 23 23 C 1.52997 * 117.49956 * 231.02007 * 9 7 2 24 24 C 1.52996 * 117.49948 * 299.68590 * 9 7 2 25 25 H 0.97000 * 119.99763 * 5.05593 * 1 2 3 26 26 H 1.09004 * 109.46983 * 305.12815 * 10 9 7 27 27 H 1.08995 * 109.47210 * 185.12550 * 10 9 7 28 28 H 0.96996 * 120.00195 * 0.54133 * 11 10 9 29 29 H 1.08001 * 120.01007 * 0.02562 * 13 12 11 30 30 H 1.07999 * 119.99672 * 180.23119 * 14 13 12 31 31 H 1.08005 * 126.36188 * 0.02562 * 17 16 15 32 32 H 1.08003 * 119.99205 * 180.02562 * 21 15 14 33 33 H 1.07991 * 120.00836 * 179.97438 * 22 21 15 34 34 H 1.08998 * 117.49908 * 215.00309 * 23 9 7 35 35 H 1.08994 * 117.49814 * 0.03148 * 23 9 7 36 36 H 1.08994 * 117.50233 * 359.97433 * 24 9 7 37 37 H 1.09001 * 117.49765 * 144.97472 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3153 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1030 1.6966 -1.2125 5 1 1.2842 2.7465 0.0006 6 1 3.1030 1.6964 1.2126 7 6 2.0047 -1.1940 -0.0005 8 1 3.0793 -1.1971 -0.1082 9 6 1.2587 -2.4949 0.1494 10 6 0.6982 -3.0871 -1.1453 11 7 1.8043 -3.4600 -2.0307 12 6 1.5383 -4.0154 -3.2852 13 6 2.5870 -4.3696 -4.1247 14 6 2.3240 -4.9233 -5.3614 15 6 1.0115 -5.1216 -5.7685 16 7 0.7445 -5.6852 -7.0259 17 6 -0.4646 -5.9476 -7.5667 18 7 -0.2570 -6.4655 -8.7493 19 7 1.0013 -6.5566 -8.9890 20 7 1.6788 -6.1031 -7.9900 21 6 -0.0369 -4.7635 -4.9317 22 6 0.2251 -4.2097 -3.6949 23 6 1.7512 -3.4726 1.2182 24 6 0.4466 -2.7001 1.4296 25 1 -0.4850 0.8368 -0.0740 26 1 0.0697 -2.3472 -1.6410 27 1 0.1046 -3.9713 -0.9133 28 1 2.7212 -3.3214 -1.7461 29 1 3.6080 -4.2162 -3.8079 30 1 3.1392 -5.2022 -6.0126 31 1 -1.4249 -5.7614 -7.1088 32 1 -1.0577 -4.9183 -5.2486 33 1 -0.5904 -3.9308 -3.0443 34 1 1.6759 -4.5376 0.9991 35 1 2.6144 -3.1747 1.8133 36 1 0.4522 -1.8945 2.1638 37 1 -0.4871 -3.2567 1.3496 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000593932272.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:29:21 Heat of formation + Delta-G solvation = 159.079762 kcal Electronic energy + Delta-G solvation = -21031.980309 eV Core-core repulsion = 17812.242503 eV Total energy + Delta-G solvation = -3219.737807 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 285.128 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -44.13725 -40.61623 -38.77704 -36.78776 -34.54096 -33.95498 -33.34018 -32.00412 -30.06097 -27.76790 -26.92927 -25.30221 -24.71143 -22.98832 -22.78232 -22.27430 -20.98477 -19.53335 -18.30299 -17.90867 -17.56683 -17.04358 -16.68995 -16.51800 -15.72797 -15.34865 -15.14385 -14.71345 -14.49573 -14.39141 -14.21688 -13.96108 -13.87703 -13.43302 -13.13653 -12.96497 -12.86329 -12.57181 -12.38267 -12.06483 -12.04957 -11.94264 -11.52331 -11.40854 -10.94194 -10.57015 -10.43064 -10.05307 -10.01182 -8.20925 -8.10739 -6.22353 -0.46004 0.38428 0.82256 0.90849 1.29228 1.40941 1.44410 1.48669 2.40627 2.58400 2.82194 3.17747 3.20059 3.46132 3.55562 3.89580 3.92188 4.00182 4.24928 4.31195 4.36701 4.54597 4.58009 4.61081 4.66886 4.78938 4.88374 4.99529 5.01705 5.10926 5.29512 5.32956 5.36699 5.49884 5.63721 5.64541 5.77834 5.85621 6.35503 6.48275 6.82142 6.93424 7.38561 7.46647 8.95130 Molecular weight = 285.13amu Principal moments of inertia in cm(-1) A = 0.025754 B = 0.003320 C = 0.003195 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1086.946179 B = 8431.962757 C = 8761.858100 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.034 3.966 3 Si 0.939 3.061 4 H -0.275 1.275 5 H -0.289 1.289 6 H -0.276 1.276 7 C -0.508 4.508 8 H 0.053 0.947 9 C 0.008 3.992 10 C 0.178 3.822 11 N -0.713 5.713 12 C 0.232 3.768 13 C -0.190 4.190 14 C -0.049 4.049 15 C 0.023 3.977 16 N -0.301 5.301 17 C 0.226 3.774 18 N -0.360 5.360 19 N -0.072 5.072 20 N -0.113 5.113 21 C -0.045 4.045 22 C -0.193 4.193 23 C -0.185 4.185 24 C -0.157 4.157 25 H 0.260 0.740 26 H 0.042 0.958 27 H 0.050 0.950 28 H 0.404 0.596 29 H 0.143 0.857 30 H 0.136 0.864 31 H 0.287 0.713 32 H 0.169 0.831 33 H 0.138 0.862 34 H 0.091 0.909 35 H 0.075 0.925 36 H 0.057 0.943 37 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.635 -9.159 -6.256 11.211 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.168 4.168 3 Si 0.766 3.234 4 H -0.200 1.200 5 H -0.215 1.215 6 H -0.202 1.202 7 C -0.545 4.545 8 H 0.071 0.929 9 C 0.008 3.992 10 C 0.054 3.946 11 N -0.335 5.335 12 C 0.122 3.878 13 C -0.214 4.214 14 C -0.070 4.070 15 C -0.071 4.071 16 N -0.090 5.090 17 C -0.069 4.069 18 N -0.212 5.212 19 N -0.066 5.066 20 N -0.099 5.099 21 C -0.066 4.066 22 C -0.217 4.217 23 C -0.222 4.222 24 C -0.195 4.195 25 H 0.069 0.931 26 H 0.061 0.939 27 H 0.068 0.932 28 H 0.239 0.761 29 H 0.160 0.840 30 H 0.154 0.846 31 H 0.302 0.698 32 H 0.186 0.814 33 H 0.156 0.844 34 H 0.110 0.890 35 H 0.094 0.906 36 H 0.076 0.924 37 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -1.160 -9.431 -7.131 11.881 hybrid contribution 0.414 1.708 1.121 2.084 sum -0.746 -7.723 -6.011 9.815 Atomic orbital electron populations 1.70031 1.06737 1.27327 1.49707 1.25517 0.95437 1.01350 0.94466 0.85920 0.78611 0.80340 0.78538 1.20034 1.21467 1.20154 1.20602 0.92885 0.90104 1.50955 0.92855 1.19043 0.99343 0.93918 0.86945 1.20721 0.87887 0.95933 0.90049 1.44970 1.09746 1.64692 1.14099 1.18394 0.94352 0.89520 0.85486 1.20588 0.99052 1.07308 0.94428 1.20660 0.94737 0.95900 0.95691 1.17394 0.95928 1.10521 0.83219 1.48990 1.05862 1.40276 1.13835 1.28258 0.93912 0.94427 0.90351 1.74361 1.09120 1.21961 1.15715 1.77997 0.98719 1.12614 1.17319 1.82552 1.14575 1.17716 0.95059 1.20800 0.98652 0.95396 0.91747 1.20671 0.95311 1.07596 0.98103 1.23003 0.97366 0.96528 1.05285 1.22441 0.93847 1.01173 1.02075 0.93119 0.93950 0.93204 0.76103 0.83959 0.84576 0.69810 0.81358 0.84423 0.89020 0.90637 0.92413 0.90255 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -46.74 12.92 21.45 0.28 -46.47 16 2 C 0.03 1.67 5.39 84.65 0.46 2.13 16 3 Si 0.94 40.38 29.55 68.60 2.03 42.40 16 4 H -0.27 -11.65 7.11 99.48 0.71 -10.94 16 5 H -0.29 -12.45 7.11 99.48 0.71 -11.75 16 6 H -0.28 -11.76 7.11 99.48 0.71 -11.05 16 7 C -0.51 -24.29 8.66 25.60 0.22 -24.06 16 8 H 0.05 2.55 7.82 -2.91 -0.02 2.53 16 9 C 0.01 0.34 1.37 -52.93 -0.07 0.27 16 10 C 0.18 6.43 4.74 86.38 0.41 6.84 16 11 N -0.71 -22.12 5.65 -339.29 -1.92 -24.04 16 12 C 0.23 6.23 6.65 38.21 0.25 6.49 16 13 C -0.19 -4.55 9.89 22.38 0.22 -4.33 16 14 C -0.05 -1.14 9.69 22.36 0.22 -0.92 16 15 C 0.02 0.51 6.71 38.06 0.26 0.77 16 16 N -0.30 -6.86 3.86 -190.96 -0.74 -7.60 16 17 C 0.23 4.05 12.15 180.19 2.19 6.24 16 18 N -0.36 -9.11 12.16 -60.14 -0.73 -9.84 16 19 N -0.07 -2.13 13.39 37.02 0.50 -1.63 16 20 N -0.11 -3.22 13.33 37.02 0.49 -2.73 16 21 C -0.04 -0.82 9.48 22.36 0.21 -0.61 16 22 C -0.19 -4.55 9.30 22.38 0.21 -4.34 16 23 C -0.18 -6.66 9.96 30.62 0.30 -6.36 16 24 C -0.16 -6.40 9.42 30.62 0.29 -6.11 16 25 H 0.26 13.14 8.32 -92.71 -0.77 12.37 16 26 H 0.04 1.77 7.91 -2.38 -0.02 1.75 16 27 H 0.05 1.62 7.93 -2.39 -0.02 1.60 16 28 H 0.40 12.51 8.40 -92.71 -0.78 11.73 16 29 H 0.14 3.01 8.06 -2.91 -0.02 2.98 16 30 H 0.14 3.06 7.76 -2.91 -0.02 3.03 16 31 H 0.29 1.48 7.19 -2.91 -0.02 1.46 16 32 H 0.17 1.63 6.87 -2.91 -0.02 1.61 16 33 H 0.14 3.24 6.72 -2.92 -0.02 3.22 16 34 H 0.09 2.85 8.14 -2.39 -0.02 2.83 16 35 H 0.08 2.76 8.14 -2.39 -0.02 2.74 16 36 H 0.06 2.63 8.14 -2.39 -0.02 2.61 16 37 H 0.08 2.95 8.14 -2.39 -0.02 2.93 16 Total: -1.00 -59.65 325.15 5.40 -54.25 By element: Atomic # 1 Polarization: 19.33 SS G_CDS: 0.33 Total: 19.65 kcal Atomic # 6 Polarization: -29.17 SS G_CDS: 5.17 Total: -24.00 kcal Atomic # 7 Polarization: -90.19 SS G_CDS: -2.12 Total: -92.31 kcal Atomic # 14 Polarization: 40.38 SS G_CDS: 2.03 Total: 42.40 kcal Total: -59.65 5.40 -54.25 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593932272.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 213.334 kcal (2) G-P(sol) polarization free energy of solvation -59.654 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 153.679 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.400 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.254 kcal (6) G-S(sol) free energy of system = (1) + (5) 159.080 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds